Wall clock time and date at job start Mon Mar 30 2020 07:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47220 * 2 1 4 4 C 1.53000 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47166 * 60.00354 * 4 3 2 6 6 C 1.53000 * 109.47166 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47059 * 59.99736 * 5 4 3 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 5 4 9 9 O 1.21283 * 120.00222 * 0.28168 * 8 7 5 10 10 C 1.50703 * 120.00290 * 180.27728 * 8 7 5 11 11 C 1.52990 * 109.47398 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47353 * 179.97438 * 11 10 8 13 13 C 1.50702 * 109.47846 * 180.02562 * 12 11 10 14 14 H 1.08010 * 119.99192 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00564 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99836 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00096 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46726 * 60.00418 * 17 15 13 19 19 H 1.48496 * 109.47105 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47194 * 300.00214 * 17 15 13 21 21 C 1.52997 * 109.46762 * 299.99926 * 5 4 3 22 22 C 1.52996 * 109.47166 * 240.00354 * 2 1 3 23 23 H 1.09003 * 109.47049 * 59.99901 * 1 2 3 24 24 H 1.08990 * 109.47258 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46739 * 299.99976 * 1 2 3 26 26 H 1.08994 * 109.47175 * 120.00335 * 2 1 3 27 27 H 1.09001 * 109.47245 * 60.00334 * 3 2 1 28 28 H 1.08999 * 109.47547 * 300.00670 * 3 2 1 29 29 H 1.09003 * 109.47049 * 300.00098 * 4 3 2 30 30 H 1.09004 * 109.47131 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47559 * 299.99905 * 6 5 4 32 32 H 1.09003 * 109.47049 * 59.99744 * 6 5 4 33 33 H 1.09001 * 109.47192 * 179.97438 * 6 5 4 34 34 H 0.97001 * 120.00384 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.46954 * 300.00581 * 10 8 7 36 36 H 1.09002 * 109.46946 * 59.99717 * 10 8 7 37 37 H 1.08998 * 109.47508 * 300.00200 * 11 10 8 38 38 H 1.09011 * 109.47182 * 60.00188 * 11 10 8 39 39 H 1.08999 * 109.47616 * 300.00389 * 12 11 10 40 40 H 1.09003 * 109.47280 * 60.00024 * 12 11 10 41 41 H 0.97000 * 119.99614 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.47245 * 179.97438 * 21 5 4 43 43 H 1.08999 * 109.47547 * 299.99437 * 21 5 4 44 44 H 1.09004 * 109.47066 * 300.00004 * 22 2 1 45 45 H 1.09003 * 109.47345 * 59.99926 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7215 -1.2502 6 6 5.6095 0.7220 -1.2512 7 7 3.5906 1.4123 -2.4460 8 6 3.9203 0.9553 -3.6703 9 8 4.6175 -0.0307 -3.7821 10 6 3.4226 1.6696 -4.9005 11 6 3.9361 0.9515 -6.1500 12 6 3.4303 1.6762 -7.3989 13 6 3.9355 0.9686 -8.6298 14 1 4.5552 0.0895 -8.5310 15 6 3.6069 1.4433 -9.8817 16 7 2.8528 2.5141 -10.0018 17 14 4.2326 0.5657 -11.4074 18 1 3.7353 -0.8336 -11.4124 19 1 3.7428 1.2699 -12.6195 20 1 5.7176 0.5633 -11.4030 21 6 3.5695 -0.7210 -1.2502 22 6 2.0400 -0.7212 -1.2493 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9337 0.9285 0.8891 30 1 3.9334 2.4702 -0.0002 31 1 5.9725 1.7498 -1.2514 32 1 5.9736 0.2083 -0.3614 33 1 5.9725 0.2080 -2.1412 34 1 3.0332 2.2012 -2.3567 35 1 2.3326 1.6701 -4.9043 36 1 3.7863 2.6971 -4.8962 37 1 5.0261 0.9506 -6.1465 38 1 3.5719 -0.0760 -6.1541 39 1 2.3403 1.6768 -7.4023 40 1 3.7940 2.7038 -7.3951 41 1 2.6219 2.8483 -10.8827 42 1 3.9320 -1.2346 -2.1407 43 1 3.9332 -1.2350 -0.3606 44 1 1.6767 -1.7489 -1.2493 45 1 1.6767 -0.2073 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593970505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:48 Heat of formation + Delta-G solvation = -103.650814 kcal Electronic energy + Delta-G solvation = -21101.360747 eV Core-core repulsion = 18115.995525 eV Total energy + Delta-G solvation = -2985.365222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58503 -39.22302 -36.18280 -35.55692 -34.07784 -32.69498 -31.74415 -29.69296 -29.33650 -25.94875 -25.11581 -23.74171 -22.69030 -21.45846 -21.17289 -20.01565 -18.64381 -17.84887 -16.93432 -16.59617 -16.47192 -15.69247 -15.22671 -15.17963 -14.82627 -14.80585 -14.58185 -14.20922 -13.96220 -13.67366 -13.32775 -13.22074 -13.09542 -12.92696 -12.69020 -12.57725 -12.49804 -12.44432 -12.33014 -12.11387 -11.83738 -11.54917 -11.45406 -11.41755 -11.27488 -11.09085 -10.99508 -10.54495 -10.33873 -9.90344 -8.20428 -6.30668 1.38955 1.42064 1.50169 1.77369 2.30622 2.42452 3.12338 3.65615 3.80884 3.83517 3.99474 4.13035 4.16341 4.24519 4.27697 4.43642 4.49683 4.61130 4.66740 4.73823 4.76720 4.84305 4.86789 4.89711 4.97798 5.03723 5.05685 5.11872 5.14191 5.18771 5.22362 5.27277 5.31065 5.35558 5.44800 5.50354 5.53382 5.60292 5.75306 5.76415 5.86822 6.27268 6.71377 6.84598 7.37703 7.42300 8.90965 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029890 B = 0.003528 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.550081 B = 7933.486426 C = 8254.304535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.114 4.114 4 C -0.113 4.113 5 C 0.175 3.825 6 C -0.162 4.162 7 N -0.710 5.710 8 C 0.517 3.483 9 O -0.572 6.572 10 C -0.133 4.133 11 C -0.079 4.079 12 C 0.026 3.974 13 C -0.549 4.549 14 H 0.051 0.949 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.269 1.269 21 C -0.129 4.129 22 C -0.109 4.109 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.410 0.590 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.039 0.961 38 H 0.038 0.962 39 H -0.001 1.001 40 H 0.000 1.000 41 H 0.265 0.735 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 -0.642 25.620 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.151 4.151 4 C -0.150 4.150 5 C 0.089 3.911 6 C -0.220 4.220 7 N -0.363 5.363 8 C 0.305 3.695 9 O -0.451 6.451 10 C -0.173 4.173 11 C -0.117 4.117 12 C -0.011 4.011 13 C -0.587 4.587 14 H 0.069 0.931 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.194 1.194 21 C -0.167 4.167 22 C -0.147 4.147 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.247 0.753 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.246 -1.224 25.439 25.567 hybrid contribution 0.056 -0.120 -1.312 1.319 sum -2.191 -1.344 24.127 24.264 Atomic orbital electron populations 1.21820 0.94954 1.01661 1.01979 1.21116 0.95625 0.96336 0.97437 1.21616 0.94578 0.96143 1.02766 1.21802 0.96258 1.01197 0.95761 1.20405 0.93345 0.92250 0.85056 1.22184 0.95120 1.02179 1.02557 1.46085 1.53548 1.32162 1.04534 1.20862 0.79232 0.83973 0.85451 1.90609 1.39276 1.27916 1.87338 1.21683 1.03030 1.00955 0.91633 1.21115 0.99180 0.98198 0.93219 1.19016 0.95099 0.94844 0.92131 1.21667 1.31806 1.12536 0.92701 0.93107 1.25907 0.95237 0.95811 1.02478 1.70063 1.38063 1.24222 1.24589 0.85556 0.78927 0.78761 0.78152 1.19432 1.20271 1.19418 1.21889 0.96269 0.96387 1.02181 1.21506 0.94759 1.00059 0.98377 0.93318 0.93049 0.91505 0.90536 0.89938 0.92067 0.89156 0.90057 0.92186 0.90436 0.93679 0.75283 0.88032 0.87850 0.94193 0.94298 0.98246 0.98179 0.92642 0.93313 0.90356 0.92766 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.19 71.98 0.66 -1.31 16 2 C -0.09 -1.23 2.72 -10.80 -0.03 -1.26 16 3 C -0.11 -1.34 5.03 30.59 0.15 -1.18 16 4 C -0.11 -1.41 4.78 30.59 0.15 -1.26 16 5 C 0.17 3.46 0.66 3.60 0.00 3.46 16 6 C -0.16 -3.56 8.40 71.98 0.60 -2.96 16 7 N -0.71 -15.80 4.04 -422.93 -1.71 -17.51 16 8 C 0.52 16.33 7.25 87.66 0.64 16.97 16 9 O -0.57 -22.57 12.19 -3.04 -0.04 -22.61 16 10 C -0.13 -4.44 5.70 29.85 0.17 -4.27 16 11 C -0.08 -3.56 4.44 30.59 0.14 -3.42 16 12 C 0.03 1.42 4.97 29.85 0.15 1.57 16 13 C -0.55 -32.85 9.11 25.60 0.23 -32.62 16 14 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.93 -57.04 13.29 21.44 0.28 -56.75 16 17 Si 0.96 45.68 29.54 68.60 2.03 47.70 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.13 -2.89 4.52 30.58 0.14 -2.75 16 22 C -0.11 -2.20 5.04 30.58 0.15 -2.05 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.77 6.86 -2.39 -0.02 0.75 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.04 1.34 6.16 -2.39 -0.01 1.33 16 34 H 0.41 6.87 7.32 -92.71 -0.68 6.19 16 35 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 38 H 0.04 1.83 8.10 -2.38 -0.02 1.81 16 39 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.05 1.49 6.18 -2.39 -0.01 1.48 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.05 1.09 7.60 -2.39 -0.02 1.07 16 Total: -1.00 -70.79 346.15 4.44 -66.35 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.26 Total: 13.22 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 3.62 Total: -30.40 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.42 Total: -74.26 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.04 Total: -22.61 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.79 4.44 -66.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593970505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.298 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds