Wall clock time and date at job start Mon Mar 30 2020 07:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 N 1.46500 * 109.47249 * 180.02562 * 6 5 4 8 8 C 1.34782 * 119.99474 * 274.99290 * 7 6 5 9 9 O 1.21274 * 120.00061 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99489 * 179.97438 * 8 7 6 11 11 C 1.52998 * 109.46944 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47263 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.47276 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00155 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00036 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00148 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99885 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46982 * 90.00395 * 17 15 13 19 19 H 1.48496 * 109.47166 * 210.00025 * 17 15 13 20 20 H 1.48494 * 109.47355 * 330.00310 * 17 15 13 21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5 23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 34 34 H 0.96992 * 120.00233 * 95.00296 * 7 6 5 35 35 H 1.09006 * 109.47561 * 300.00415 * 10 8 7 36 36 H 1.08997 * 109.47517 * 60.00469 * 10 8 7 37 37 H 1.09000 * 109.47367 * 299.99829 * 11 10 8 38 38 H 1.08998 * 109.47577 * 60.00251 * 11 10 8 39 39 H 1.09006 * 109.47443 * 299.99903 * 12 11 10 40 40 H 1.09006 * 109.47329 * 59.99977 * 12 11 10 41 41 H 0.96996 * 120.00130 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.46986 * 299.99742 * 21 6 5 43 43 H 1.09001 * 109.47601 * 180.02562 * 21 6 5 44 44 H 1.09001 * 109.46922 * 180.02562 * 22 21 6 45 45 H 1.09000 * 109.47140 * 59.99976 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 7 5.5456 -1.4405 -0.0003 8 6 6.2201 -2.3963 -0.6697 9 8 5.6143 -3.2568 -1.2724 10 6 7.7270 -2.3949 -0.6702 11 6 8.2379 -3.5759 -1.4979 12 6 9.7678 -3.5742 -1.4989 13 6 10.2710 -4.7379 -2.3136 14 1 9.5696 -5.4111 -2.7840 15 6 11.6267 -4.9431 -2.4585 16 7 12.4807 -4.1236 -1.8853 17 14 12.2503 -6.3859 -3.4678 18 1 12.4144 -5.9660 -4.8827 19 1 13.5591 -6.8370 -2.9304 20 1 11.2733 -7.5016 -3.3927 21 6 3.5705 -0.7204 1.2490 22 6 2.0405 -0.7209 1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.9334 -1.2342 -2.1397 33 1 3.7176 -2.4693 0.0000 34 1 6.0301 -0.7522 0.4816 35 1 8.0895 -1.4633 -1.1048 36 1 8.0908 -2.4839 0.3534 37 1 7.8756 -4.5077 -1.0636 38 1 7.8742 -3.4866 -2.5215 39 1 10.1299 -2.6424 -1.9335 40 1 10.1320 -3.6633 -0.4753 41 1 13.4345 -4.2677 -1.9875 42 1 3.9335 0.3074 1.2488 43 1 3.9345 -1.2336 2.1390 44 1 1.6772 -0.2067 2.1391 45 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593983979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:48 Heat of formation + Delta-G solvation = -89.350198 kcal Electronic energy + Delta-G solvation = -20465.632884 eV Core-core repulsion = 17480.887783 eV Total energy + Delta-G solvation = -2984.745100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29283 -38.81755 -35.05314 -34.10038 -32.13950 -31.39769 -31.07255 -27.95753 -27.64011 -25.92273 -23.68518 -23.03771 -21.37559 -20.45765 -19.73280 -18.65916 -16.77835 -16.21166 -16.00497 -15.39981 -15.15240 -15.10361 -14.40288 -14.29820 -13.88629 -13.57672 -13.21485 -12.99080 -12.62212 -12.57402 -12.23657 -12.21060 -12.03253 -11.78236 -11.76360 -11.36436 -11.24350 -11.14977 -10.78099 -10.69883 -10.55686 -10.51324 -10.45486 -10.26429 -9.63892 -9.60426 -9.21798 -8.97519 -8.90774 -8.29703 -5.95442 -3.96661 2.99677 3.34261 3.36410 3.42074 3.47261 4.34268 4.40599 4.50822 4.53492 4.72099 4.92361 5.06317 5.11554 5.21777 5.25733 5.28627 5.33353 5.38543 5.40594 5.48577 5.54730 5.64255 5.66940 5.75300 5.75876 5.76859 5.80179 5.89913 5.92175 6.02089 6.06043 6.19633 6.28035 6.33558 6.62856 6.77066 6.97647 7.20265 7.69022 7.74470 7.87055 8.05636 8.49638 8.54435 9.10550 9.67145 11.16124 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.053306 B = 0.002780 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.138441 B =10068.724864 C =10251.753202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.145 4.145 4 C -0.105 4.105 5 C -0.131 4.131 6 C 0.146 3.854 7 N -0.738 5.738 8 C 0.513 3.487 9 O -0.538 6.538 10 C -0.139 4.139 11 C -0.094 4.094 12 C 0.020 3.980 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.128 4.128 22 C -0.104 4.104 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.397 0.603 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.395 12.771 7.476 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 C -0.202 4.202 4 C -0.143 4.143 5 C -0.170 4.170 6 C 0.041 3.959 7 N -0.390 5.390 8 C 0.301 3.699 9 O -0.414 6.414 10 C -0.179 4.179 11 C -0.132 4.132 12 C -0.017 4.017 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.166 4.166 22 C -0.142 4.142 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.231 0.769 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.639 12.151 7.057 26.646 hybrid contribution 0.710 -0.342 -0.292 0.840 sum -21.930 11.808 6.766 25.810 Atomic orbital electron populations 1.21860 0.94646 1.01759 1.01601 1.20577 0.95187 0.95625 0.95377 1.21976 1.01580 0.95193 1.01434 1.21553 0.95145 1.00584 0.97039 1.21965 0.95446 1.00874 0.98695 1.20890 0.80101 1.00525 0.94403 1.46226 1.06616 1.31374 1.54777 1.21247 0.91079 0.80195 0.77406 1.90665 1.70713 1.37230 1.42817 1.21846 0.89622 1.03081 1.03369 1.21432 0.98986 0.94640 0.98190 1.19134 0.88370 0.97089 0.97100 1.21283 0.91562 1.11541 1.31164 0.92588 1.25023 0.97067 0.96516 0.95947 1.69961 1.01956 1.37469 1.44409 0.86592 0.78148 0.82926 0.80353 1.20682 1.21270 1.19842 1.21849 0.96251 1.01036 0.97460 1.21533 0.94537 1.00771 0.97336 0.92763 0.92703 0.92649 0.91948 0.92836 0.92909 0.91752 0.91836 0.91617 0.91342 0.89764 0.76892 0.89467 0.89465 0.92755 0.92768 0.96645 0.96629 0.93091 0.91166 0.91388 0.91636 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.48 37.16 0.31 -0.60 16 2 C -0.07 -0.49 0.77 -154.51 -0.12 -0.61 16 3 C -0.14 -0.98 7.78 37.16 0.29 -0.69 16 4 C -0.11 -0.92 4.73 -26.73 -0.13 -1.05 16 5 C -0.13 -1.37 5.22 -26.73 -0.14 -1.51 16 6 C 0.15 1.58 2.45 -67.93 -0.17 1.41 16 7 N -0.74 -8.78 5.08 -53.81 -0.27 -9.05 16 8 C 0.51 8.37 7.79 -10.98 -0.09 8.28 16 9 O -0.54 -10.93 15.65 5.56 0.09 -10.85 16 10 C -0.14 -2.35 5.70 -27.89 -0.16 -2.51 16 11 C -0.09 -2.08 4.44 -26.73 -0.12 -2.20 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 17 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 21 C -0.13 -1.02 5.12 -26.73 -0.14 -1.16 16 22 C -0.10 -0.75 4.73 -26.73 -0.13 -0.88 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.44 4.81 -51.93 -0.25 0.19 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.63 6.43 -51.93 -0.33 0.30 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.12 7.58 -51.93 -0.39 0.72 16 34 H 0.40 3.62 8.60 -40.82 -0.35 3.27 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.07 0.50 6.43 -51.93 -0.33 0.16 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -32.89 349.84 -8.71 -41.59 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -8.39 Total: -2.47 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.12 Total: -15.08 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.46 Total: -35.69 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.89 -8.71 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593983979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.756 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds