Wall clock time and date at job start Mon Mar 30 2020 07:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 N 1.46500 * 109.47249 * 180.02562 * 6 5 4 8 8 C 1.34782 * 119.99474 * 274.99290 * 7 6 5 9 9 O 1.21274 * 120.00061 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99489 * 179.97438 * 8 7 6 11 11 C 1.52998 * 109.46944 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47263 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.47276 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00155 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00036 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00148 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99885 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46982 * 90.00395 * 17 15 13 19 19 H 1.48496 * 109.47166 * 210.00025 * 17 15 13 20 20 H 1.48494 * 109.47355 * 330.00310 * 17 15 13 21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5 23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 34 34 H 0.96992 * 120.00233 * 95.00296 * 7 6 5 35 35 H 1.09006 * 109.47561 * 300.00415 * 10 8 7 36 36 H 1.08997 * 109.47517 * 60.00469 * 10 8 7 37 37 H 1.09000 * 109.47367 * 299.99829 * 11 10 8 38 38 H 1.08998 * 109.47577 * 60.00251 * 11 10 8 39 39 H 1.09006 * 109.47443 * 299.99903 * 12 11 10 40 40 H 1.09006 * 109.47329 * 59.99977 * 12 11 10 41 41 H 0.96996 * 120.00130 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.46986 * 299.99742 * 21 6 5 43 43 H 1.09001 * 109.47601 * 180.02562 * 21 6 5 44 44 H 1.09001 * 109.46922 * 180.02562 * 22 21 6 45 45 H 1.09000 * 109.47140 * 59.99976 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 7 5.5456 -1.4405 -0.0003 8 6 6.2201 -2.3963 -0.6697 9 8 5.6143 -3.2568 -1.2724 10 6 7.7270 -2.3949 -0.6702 11 6 8.2379 -3.5759 -1.4979 12 6 9.7678 -3.5742 -1.4989 13 6 10.2710 -4.7379 -2.3136 14 1 9.5696 -5.4111 -2.7840 15 6 11.6267 -4.9431 -2.4585 16 7 12.4807 -4.1236 -1.8853 17 14 12.2503 -6.3859 -3.4678 18 1 12.4144 -5.9660 -4.8827 19 1 13.5591 -6.8370 -2.9304 20 1 11.2733 -7.5016 -3.3927 21 6 3.5705 -0.7204 1.2490 22 6 2.0405 -0.7209 1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.9334 -1.2342 -2.1397 33 1 3.7176 -2.4693 0.0000 34 1 6.0301 -0.7522 0.4816 35 1 8.0895 -1.4633 -1.1048 36 1 8.0908 -2.4839 0.3534 37 1 7.8756 -4.5077 -1.0636 38 1 7.8742 -3.4866 -2.5215 39 1 10.1299 -2.6424 -1.9335 40 1 10.1320 -3.6633 -0.4753 41 1 13.4345 -4.2677 -1.9875 42 1 3.9335 0.3074 1.2488 43 1 3.9345 -1.2336 2.1390 44 1 1.6772 -0.2067 2.1391 45 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593983979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:47 Heat of formation + Delta-G solvation = -108.949906 kcal Electronic energy + Delta-G solvation = -20466.482791 eV Core-core repulsion = 17480.887783 eV Total energy + Delta-G solvation = -2985.595008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25974 -39.87237 -36.28796 -35.84518 -34.05095 -32.46258 -31.78688 -29.70930 -28.14986 -26.96335 -25.45534 -23.77417 -22.57932 -21.80678 -21.18423 -19.39371 -18.55620 -17.67389 -17.24900 -16.69818 -16.48377 -16.02418 -15.72895 -15.16809 -14.95734 -14.85143 -14.27156 -14.21035 -14.01335 -13.71572 -13.34909 -13.21803 -13.11040 -12.78136 -12.63379 -12.58697 -12.51786 -12.43813 -12.39957 -11.99745 -11.85280 -11.56132 -11.47468 -11.36389 -11.25013 -11.12436 -10.99199 -10.64702 -10.54931 -9.99458 -8.20879 -6.30885 1.38919 1.40156 1.51770 1.68693 2.24225 2.41800 3.11924 3.66455 3.73571 3.83683 3.98580 4.06357 4.19158 4.24698 4.28354 4.39188 4.42816 4.54521 4.56805 4.70024 4.76059 4.84867 4.88097 4.95688 4.97258 5.07156 5.08722 5.11082 5.13611 5.14975 5.19029 5.22855 5.22996 5.30736 5.47014 5.52106 5.52861 5.60416 5.67031 5.75069 5.86467 6.27185 6.61888 6.84505 7.33013 7.37850 8.90708 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.053306 B = 0.002780 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.138441 B =10068.724864 C =10251.753202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C -0.144 4.144 4 C -0.103 4.103 5 C -0.126 4.126 6 C 0.144 3.856 7 N -0.716 5.716 8 C 0.515 3.485 9 O -0.586 6.586 10 C -0.131 4.131 11 C -0.082 4.082 12 C 0.026 3.974 13 C -0.548 4.548 14 H 0.050 0.950 15 C 0.003 3.997 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.269 1.269 21 C -0.119 4.119 22 C -0.103 4.103 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.415 0.585 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.001 0.999 40 H 0.001 0.999 41 H 0.265 0.735 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.084 13.967 8.343 28.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.064 4.064 3 C -0.201 4.201 4 C -0.141 4.141 5 C -0.165 4.165 6 C 0.039 3.961 7 N -0.368 5.368 8 C 0.303 3.697 9 O -0.466 6.466 10 C -0.171 4.171 11 C -0.120 4.120 12 C -0.011 4.011 13 C -0.586 4.586 14 H 0.068 0.932 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.193 1.193 21 C -0.157 4.157 22 C -0.141 4.141 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.252 0.748 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.340 13.395 7.956 28.062 hybrid contribution 0.910 -0.684 -0.551 1.265 sum -22.431 12.711 7.405 26.824 Atomic orbital electron populations 1.21844 0.93893 1.01753 1.02240 1.20554 0.95778 0.95846 0.94266 1.21966 1.01437 0.94580 1.02073 1.21542 0.93818 1.00334 0.98438 1.21900 0.96710 1.00937 0.96927 1.21000 0.79039 0.99642 0.96389 1.46026 1.07306 1.30337 1.53152 1.21065 0.90789 0.80457 0.77403 1.90655 1.71382 1.39375 1.45167 1.21683 0.90255 1.01477 1.03640 1.21149 0.96073 0.96472 0.98317 1.19018 0.91053 0.95483 0.95522 1.21695 0.92216 1.12648 1.32087 0.93162 1.25911 0.97185 0.99422 0.96986 1.70062 1.02445 1.39079 1.45341 0.85495 0.77733 0.79259 0.78869 1.19671 1.20195 1.19335 1.21810 0.96775 1.01499 0.95622 1.21550 0.93844 1.00641 0.98062 0.91671 0.92529 0.93027 0.92111 0.92801 0.91750 0.92943 0.91432 0.90246 0.94678 0.92527 0.74773 0.87454 0.87386 0.94257 0.94296 0.98066 0.98035 0.92625 0.89395 0.90935 0.89835 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.48 71.98 0.61 -0.92 16 2 C -0.06 -0.81 0.77 -52.18 -0.04 -0.85 16 3 C -0.14 -1.54 7.78 71.98 0.56 -0.98 16 4 C -0.10 -1.75 4.73 30.59 0.14 -1.60 16 5 C -0.13 -2.59 5.22 30.59 0.16 -2.43 16 6 C 0.14 3.02 2.45 44.99 0.11 3.13 16 7 N -0.72 -16.17 5.08 -442.54 -2.25 -18.42 16 8 C 0.51 16.72 7.79 87.66 0.68 17.40 16 9 O -0.59 -24.55 15.65 -3.01 -0.05 -24.59 16 10 C -0.13 -4.33 5.70 29.85 0.17 -4.16 16 11 C -0.08 -3.70 4.44 30.59 0.14 -3.56 16 12 C 0.03 1.42 4.97 29.85 0.15 1.57 16 13 C -0.55 -32.80 9.11 25.60 0.23 -32.57 16 14 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 15 C 0.00 0.17 5.46 84.66 0.46 0.63 16 16 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 17 Si 0.96 45.70 29.54 68.60 2.03 47.72 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 C -0.12 -1.63 5.12 30.59 0.16 -1.47 16 22 C -0.10 -1.27 4.73 30.60 0.14 -1.12 16 23 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.67 4.81 -2.38 -0.01 0.66 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.40 6.43 -2.39 -0.02 1.39 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 34 H 0.42 6.50 8.60 -92.71 -0.80 5.70 16 35 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 36 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 38 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 39 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 40 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 41 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.09 0.93 6.43 -2.39 -0.02 0.92 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -72.24 349.84 3.84 -68.40 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.14 Total: 10.44 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 3.68 Total: -26.94 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.96 Total: -75.03 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.24 3.84 -68.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593983979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.547 kcal (2) G-P(sol) polarization free energy of solvation -72.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds