Wall clock time and date at job start Mon Mar 30 2020 07:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52632 * 1 3 3 C 1.54193 * 108.65451 * 2 1 4 4 C 1.49442 * 112.54013 * 239.30802 * 2 1 3 5 5 C 1.54004 * 114.63027 * 331.31007 * 4 2 1 6 6 C 1.54607 * 111.69781 * 297.79760 * 5 4 2 7 7 N 1.43300 * 116.59823 * 346.49595 * 6 5 4 8 8 C 1.34871 * 120.44837 * 258.61881 * 7 6 5 9 9 O 1.21280 * 120.00322 * 180.58581 * 8 7 6 10 10 C 1.50700 * 119.99731 * 0.59204 * 8 7 6 11 11 C 1.53007 * 109.47014 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47291 * 179.97438 * 11 10 8 13 13 C 1.50693 * 109.47188 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99745 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99930 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00214 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00085 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46861 * 60.00051 * 17 15 13 19 19 H 1.48492 * 109.47072 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46985 * 300.00651 * 17 15 13 21 21 C 1.50003 * 118.98990 * 79.20463 * 7 6 5 22 22 C 1.45551 * 108.76096 * 277.39023 * 21 7 6 23 23 H 1.08998 * 109.46757 * 300.22553 * 1 2 3 24 24 H 1.09002 * 109.46943 * 60.21918 * 1 2 3 25 25 H 1.08996 * 109.47262 * 180.21935 * 1 2 3 26 26 H 1.09001 * 109.47493 * 181.41047 * 3 2 1 27 27 H 1.09003 * 109.47476 * 301.40895 * 3 2 1 28 28 H 1.09000 * 109.47682 * 61.41325 * 3 2 1 29 29 H 1.09861 * 108.42551 * 92.86040 * 4 2 1 30 30 H 1.09581 * 108.90165 * 208.81484 * 4 2 1 31 31 H 1.08624 * 111.44299 * 61.88371 * 5 4 2 32 32 H 1.10281 * 108.20819 * 179.11585 * 5 4 2 33 33 H 1.09056 * 108.43247 * 108.97054 * 6 5 4 34 34 H 1.09293 * 107.95235 * 225.00203 * 6 5 4 35 35 H 1.09002 * 109.47221 * 299.99630 * 10 8 7 36 36 H 1.09005 * 109.47053 * 59.99793 * 10 8 7 37 37 H 1.08995 * 109.47063 * 300.00492 * 11 10 8 38 38 H 1.09003 * 109.46785 * 59.99743 * 11 10 8 39 39 H 1.08995 * 109.46851 * 300.00510 * 12 11 10 40 40 H 1.08999 * 109.46659 * 59.99873 * 12 11 10 41 41 H 0.97001 * 120.00394 * 179.97438 * 16 15 13 42 42 H 1.09842 * 108.84323 * 158.61527 * 21 7 6 43 43 H 1.08746 * 110.37964 * 39.98424 * 21 7 6 44 44 H 1.09665 * 108.05258 * 184.39357 * 22 21 7 45 45 H 1.09451 * 108.53885 * 299.82993 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5263 0.0000 0.0000 3 6 2.0195 1.4609 0.0000 4 6 2.0992 -0.7045 -1.1869 5 6 1.2110 -1.8253 -1.7585 6 6 0.9851 -2.9566 -0.7292 7 7 1.8358 -2.9541 0.4240 8 6 2.8880 -3.7945 0.4990 9 8 3.5964 -3.7930 1.4834 10 6 3.1834 -4.7354 -0.6405 11 6 4.4200 -5.5714 -0.3041 12 6 4.7196 -6.5271 -1.4607 13 6 5.9378 -7.3500 -1.1296 14 1 6.4472 -7.2060 -0.1882 15 6 6.4015 -8.2874 -2.0281 16 7 5.7810 -8.4631 -3.1742 17 14 7.9113 -9.3080 -1.6174 18 1 7.6583 -10.0906 -0.3809 19 1 8.2014 -10.2363 -2.7395 20 1 9.0738 -8.4088 -1.4049 21 6 1.5301 -2.0123 1.5509 22 6 2.0817 -0.7041 1.2303 23 1 -0.3633 0.5173 0.8880 24 1 -0.3633 0.5104 -0.8920 25 1 -0.3633 -1.0276 0.0039 26 1 3.1091 1.4766 -0.0253 27 1 1.6283 1.9765 -0.8771 28 1 1.6699 1.9625 0.9023 29 1 2.2803 0.0371 -1.9769 30 1 3.0742 -1.1238 -0.9144 31 1 0.2596 -1.4372 -2.1110 32 1 1.7237 -2.2591 -2.6331 33 1 -0.0507 -2.9130 -0.3906 34 1 1.1205 -3.9116 -1.2431 35 1 2.3301 -5.3952 -0.7975 36 1 3.3698 -4.1603 -1.5476 37 1 5.2731 -4.9114 -0.1473 38 1 4.2340 -6.1464 0.6031 39 1 3.8663 -7.1871 -1.6170 40 1 4.9053 -5.9524 -2.3680 41 1 6.1074 -9.1223 -3.8065 42 1 2.0057 -2.3887 2.4667 43 1 0.4573 -1.9612 1.7212 44 1 1.9216 -0.0470 2.0935 45 1 3.1645 -0.8040 1.1059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593984603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:23 Heat of formation + Delta-G solvation = -66.463896 kcal Electronic energy + Delta-G solvation = -21296.260568 eV Core-core repulsion = 18312.507892 eV Total energy + Delta-G solvation = -2983.752676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.52400 -38.35407 -35.05446 -34.23559 -32.83476 -31.88319 -29.62139 -27.85730 -27.56427 -26.21116 -24.24794 -23.38174 -21.95064 -20.11187 -18.56483 -18.39958 -16.83858 -16.39832 -15.97677 -15.60891 -15.17261 -14.76194 -14.45526 -14.39779 -14.08947 -13.47018 -13.21458 -13.08858 -12.49775 -12.24488 -12.22854 -12.12186 -11.96479 -11.74578 -11.60841 -11.41720 -11.28382 -10.99578 -10.76395 -10.61184 -10.58980 -10.52021 -10.42337 -10.32327 -9.63158 -9.53925 -9.20395 -8.97968 -8.57745 -8.29199 -5.95069 -3.96393 2.94414 3.10553 3.38373 3.41576 3.45630 4.39454 4.50809 4.52727 4.57544 4.79545 4.86934 5.00915 5.07658 5.24714 5.28036 5.38556 5.40861 5.43394 5.47329 5.52067 5.60157 5.64220 5.71459 5.74349 5.77732 5.78477 5.84185 5.87625 6.05822 6.09392 6.14556 6.15677 6.30492 6.33095 6.62755 6.76837 6.97555 7.19934 7.61905 7.73957 7.87144 8.05755 8.47988 8.50324 9.10450 9.67346 11.16415 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035781 B = 0.003580 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.353837 B = 7819.742303 C = 8014.299124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 C -0.141 4.141 4 C -0.106 4.106 5 C -0.132 4.132 6 C 0.106 3.894 7 N -0.613 5.613 8 C 0.516 3.484 9 O -0.538 6.538 10 C -0.137 4.137 11 C -0.095 4.095 12 C 0.021 3.979 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.120 3.880 22 C -0.128 4.128 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.290 18.722 4.299 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.055 4.055 3 C -0.198 4.198 4 C -0.143 4.143 5 C -0.171 4.171 6 C -0.019 4.019 7 N -0.347 5.347 8 C 0.306 3.694 9 O -0.414 6.414 10 C -0.176 4.176 11 C -0.133 4.133 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.001 4.001 22 C -0.166 4.166 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.865 18.597 4.677 23.663 hybrid contribution 0.782 -0.498 -0.030 0.927 sum -13.083 18.099 4.647 22.811 Atomic orbital electron populations 1.21806 0.94356 1.02069 1.01397 1.19752 0.95609 0.94766 0.95344 1.22178 1.01095 0.95063 1.01485 1.21274 0.99291 0.96906 0.96859 1.22471 1.00595 0.95960 0.98113 1.21091 0.93945 0.99487 0.87397 1.48086 1.29841 1.38926 1.17891 1.21285 0.78840 0.80219 0.89034 1.90654 1.47806 1.69425 1.33552 1.21865 1.02033 0.97519 0.96226 1.21453 0.93758 0.97389 1.00686 1.19117 0.96558 0.93390 0.92508 1.21242 1.11901 1.19469 1.03024 0.92651 1.25012 0.97145 0.97232 0.95082 1.69950 1.40452 1.35030 1.08344 0.86657 0.83433 0.80114 0.77811 1.20232 1.21340 1.20233 1.20641 1.00425 0.88498 0.90495 1.20677 1.01584 0.96339 0.98040 0.92922 0.92690 0.92062 0.92747 0.92655 0.92782 0.92788 0.91922 0.90970 0.91832 0.91906 0.90237 0.89488 0.89523 0.92798 0.92768 0.96650 0.96663 0.93037 0.89631 0.90883 0.91976 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 7.05 36.97 0.26 -0.74 16 2 C -0.05 -0.47 0.71 -156.21 -0.11 -0.58 16 3 C -0.14 -1.10 8.06 37.78 0.30 -0.80 16 4 C -0.11 -1.03 4.48 -27.96 -0.13 -1.15 16 5 C -0.13 -1.19 5.34 -25.36 -0.14 -1.32 16 6 C 0.11 1.06 4.96 -4.89 -0.02 1.04 16 7 N -0.61 -7.78 2.17 -175.88 -0.38 -8.16 16 8 C 0.52 8.68 7.70 -10.94 -0.08 8.60 16 9 O -0.54 -11.05 15.51 5.56 0.09 -10.96 16 10 C -0.14 -2.36 4.11 -27.88 -0.11 -2.48 16 11 C -0.09 -2.11 4.44 -26.73 -0.12 -2.22 16 12 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 13 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 17 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.12 1.32 5.35 -5.60 -0.03 1.29 16 22 C -0.13 -1.28 3.88 -30.63 -0.12 -1.40 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.44 4.55 -51.93 -0.24 0.21 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.40 8.13 -51.93 -0.42 -0.03 16 28 H 0.05 0.38 8.11 -51.93 -0.42 -0.04 16 29 H 0.05 0.49 7.73 -51.44 -0.40 0.10 16 30 H 0.06 0.77 7.05 -51.60 -0.36 0.40 16 31 H 0.07 0.53 7.44 -52.14 -0.39 0.14 16 32 H 0.06 0.60 8.25 -51.20 -0.42 0.17 16 33 H 0.06 0.52 7.00 -51.90 -0.36 0.16 16 34 H 0.08 0.82 5.97 -51.76 -0.31 0.51 16 35 H 0.09 1.37 7.40 -51.93 -0.38 0.99 16 36 H 0.09 1.39 8.12 -51.93 -0.42 0.97 16 37 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.09 1.09 7.31 -51.45 -0.38 0.71 16 43 H 0.07 0.64 7.13 -52.07 -0.37 0.27 16 44 H 0.06 0.54 8.01 -51.55 -0.41 0.13 16 45 H 0.06 0.81 7.53 -51.67 -0.39 0.42 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -32.63 340.14 -8.48 -41.11 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -8.17 Total: -4.42 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.85 Total: -13.32 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.35 Total: -34.74 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.63 -8.48 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593984603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.357 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds