Wall clock time and date at job start Mon Mar 30 2020 07:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52632 * 1 3 3 C 1.54193 * 108.65451 * 2 1 4 4 C 1.49442 * 112.54013 * 239.30802 * 2 1 3 5 5 C 1.54004 * 114.63027 * 331.31007 * 4 2 1 6 6 C 1.54607 * 111.69781 * 297.79760 * 5 4 2 7 7 N 1.43300 * 116.59823 * 346.49595 * 6 5 4 8 8 C 1.34871 * 120.44837 * 258.61881 * 7 6 5 9 9 O 1.21280 * 120.00322 * 180.58581 * 8 7 6 10 10 C 1.50700 * 119.99731 * 0.59204 * 8 7 6 11 11 C 1.53007 * 109.47014 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47291 * 179.97438 * 11 10 8 13 13 C 1.50693 * 109.47188 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99745 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99930 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00214 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00085 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46861 * 60.00051 * 17 15 13 19 19 H 1.48492 * 109.47072 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46985 * 300.00651 * 17 15 13 21 21 C 1.50003 * 118.98990 * 79.20463 * 7 6 5 22 22 C 1.45551 * 108.76096 * 277.39023 * 21 7 6 23 23 H 1.08998 * 109.46757 * 300.22553 * 1 2 3 24 24 H 1.09002 * 109.46943 * 60.21918 * 1 2 3 25 25 H 1.08996 * 109.47262 * 180.21935 * 1 2 3 26 26 H 1.09001 * 109.47493 * 181.41047 * 3 2 1 27 27 H 1.09003 * 109.47476 * 301.40895 * 3 2 1 28 28 H 1.09000 * 109.47682 * 61.41325 * 3 2 1 29 29 H 1.09861 * 108.42551 * 92.86040 * 4 2 1 30 30 H 1.09581 * 108.90165 * 208.81484 * 4 2 1 31 31 H 1.08624 * 111.44299 * 61.88371 * 5 4 2 32 32 H 1.10281 * 108.20819 * 179.11585 * 5 4 2 33 33 H 1.09056 * 108.43247 * 108.97054 * 6 5 4 34 34 H 1.09293 * 107.95235 * 225.00203 * 6 5 4 35 35 H 1.09002 * 109.47221 * 299.99630 * 10 8 7 36 36 H 1.09005 * 109.47053 * 59.99793 * 10 8 7 37 37 H 1.08995 * 109.47063 * 300.00492 * 11 10 8 38 38 H 1.09003 * 109.46785 * 59.99743 * 11 10 8 39 39 H 1.08995 * 109.46851 * 300.00510 * 12 11 10 40 40 H 1.08999 * 109.46659 * 59.99873 * 12 11 10 41 41 H 0.97001 * 120.00394 * 179.97438 * 16 15 13 42 42 H 1.09842 * 108.84323 * 158.61527 * 21 7 6 43 43 H 1.08746 * 110.37964 * 39.98424 * 21 7 6 44 44 H 1.09665 * 108.05258 * 184.39357 * 22 21 7 45 45 H 1.09451 * 108.53885 * 299.82993 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5263 0.0000 0.0000 3 6 2.0195 1.4609 0.0000 4 6 2.0992 -0.7045 -1.1869 5 6 1.2110 -1.8253 -1.7585 6 6 0.9851 -2.9566 -0.7292 7 7 1.8358 -2.9541 0.4240 8 6 2.8880 -3.7945 0.4990 9 8 3.5964 -3.7930 1.4834 10 6 3.1834 -4.7354 -0.6405 11 6 4.4200 -5.5714 -0.3041 12 6 4.7196 -6.5271 -1.4607 13 6 5.9378 -7.3500 -1.1296 14 1 6.4472 -7.2060 -0.1882 15 6 6.4015 -8.2874 -2.0281 16 7 5.7810 -8.4631 -3.1742 17 14 7.9113 -9.3080 -1.6174 18 1 7.6583 -10.0906 -0.3809 19 1 8.2014 -10.2363 -2.7395 20 1 9.0738 -8.4088 -1.4049 21 6 1.5301 -2.0123 1.5509 22 6 2.0817 -0.7041 1.2303 23 1 -0.3633 0.5173 0.8880 24 1 -0.3633 0.5104 -0.8920 25 1 -0.3633 -1.0276 0.0039 26 1 3.1091 1.4766 -0.0253 27 1 1.6283 1.9765 -0.8771 28 1 1.6699 1.9625 0.9023 29 1 2.2803 0.0371 -1.9769 30 1 3.0742 -1.1238 -0.9144 31 1 0.2596 -1.4372 -2.1110 32 1 1.7237 -2.2591 -2.6331 33 1 -0.0507 -2.9130 -0.3906 34 1 1.1205 -3.9116 -1.2431 35 1 2.3301 -5.3952 -0.7975 36 1 3.3698 -4.1603 -1.5476 37 1 5.2731 -4.9114 -0.1473 38 1 4.2340 -6.1464 0.6031 39 1 3.8663 -7.1871 -1.6170 40 1 4.9053 -5.9524 -2.3680 41 1 6.1074 -9.1223 -3.8065 42 1 2.0057 -2.3887 2.4667 43 1 0.4573 -1.9612 1.7212 44 1 1.9216 -0.0470 2.0935 45 1 3.1645 -0.8040 1.1059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593984603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:23 Heat of formation + Delta-G solvation = -84.460828 kcal Electronic energy + Delta-G solvation = -21297.040973 eV Core-core repulsion = 18312.507892 eV Total energy + Delta-G solvation = -2984.533081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55929 -39.45125 -36.17573 -36.08012 -34.17684 -33.45038 -30.71035 -29.32620 -28.37234 -27.05873 -25.95844 -24.39978 -23.19336 -21.86058 -19.62651 -19.30412 -18.45625 -17.94620 -17.20520 -16.83394 -16.49453 -15.94490 -15.75298 -15.46774 -15.20340 -14.56423 -14.40990 -14.27611 -14.05392 -13.75803 -13.29261 -13.14312 -12.91207 -12.78860 -12.73019 -12.61836 -12.50602 -12.44477 -12.27788 -12.13104 -11.83057 -11.58648 -11.47696 -11.30663 -11.30411 -11.17794 -11.08035 -10.59283 -10.54953 -9.63723 -8.20742 -6.31055 1.38823 1.41974 1.50107 1.62986 2.01567 2.41227 3.11927 3.57434 3.73098 3.83012 3.88178 4.06788 4.14235 4.17652 4.21680 4.27372 4.41847 4.54953 4.61915 4.68868 4.73579 4.81216 4.85272 4.90261 4.92186 4.96484 5.02575 5.06018 5.13574 5.15065 5.16813 5.20257 5.26023 5.33152 5.45002 5.47195 5.51714 5.61082 5.73208 5.73711 5.84892 6.26215 6.48290 6.83605 7.20686 7.37489 8.90636 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035781 B = 0.003580 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.353837 B = 7819.742303 C = 8014.299124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C -0.140 4.140 4 C -0.105 4.105 5 C -0.127 4.127 6 C 0.095 3.905 7 N -0.601 5.601 8 C 0.515 3.485 9 O -0.586 6.586 10 C -0.127 4.127 11 C -0.081 4.081 12 C 0.028 3.972 13 C -0.550 4.550 14 H 0.050 0.950 15 C 0.004 3.996 16 N -0.928 5.928 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.121 3.879 22 C -0.124 4.124 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.028 0.972 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.002 0.998 40 H -0.001 1.001 41 H 0.265 0.735 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.993 19.623 4.149 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.051 4.051 3 C -0.197 4.197 4 C -0.143 4.143 5 C -0.166 4.166 6 C -0.029 4.029 7 N -0.333 5.333 8 C 0.305 3.695 9 O -0.466 6.466 10 C -0.167 4.167 11 C -0.119 4.119 12 C -0.009 4.009 13 C -0.588 4.588 14 H 0.069 0.931 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.786 3.214 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.195 1.195 21 C 0.000 4.000 22 C -0.162 4.162 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.125 0.875 44 H 0.096 0.904 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -15.613 19.530 4.509 25.407 hybrid contribution 1.272 -0.726 -0.012 1.465 sum -14.340 18.804 4.497 24.072 Atomic orbital electron populations 1.21786 0.92415 1.02590 1.02477 1.19750 0.96998 0.94726 0.93616 1.22170 1.00280 0.94737 1.02498 1.21281 0.98026 0.97332 0.97661 1.22461 1.01655 0.95160 0.97305 1.21389 0.94774 1.00013 0.86767 1.48063 1.28420 1.37639 1.19189 1.21080 0.79570 0.80813 0.88058 1.90634 1.49789 1.71105 1.35089 1.21678 1.00307 0.97649 0.97051 1.21162 0.95627 0.96733 0.98397 1.18991 0.95212 0.93432 0.93233 1.21655 1.13251 1.20672 1.03232 0.93140 1.25902 1.00375 0.98297 0.94804 1.70054 1.41977 1.35629 1.09176 0.85553 0.79331 0.78466 0.78028 1.19396 1.20212 1.19478 1.20816 1.02151 0.88094 0.88893 1.20629 0.99493 0.96392 0.99678 0.91916 0.91656 0.91742 0.94135 0.91626 0.91779 0.92207 0.95304 0.88293 0.92457 0.88922 0.90428 0.87563 0.88251 0.94460 0.94105 0.97995 0.98229 0.92603 0.91846 0.87550 0.90353 0.95014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 7.05 71.86 0.51 -0.92 16 2 C -0.05 -0.77 0.71 -53.29 -0.04 -0.81 16 3 C -0.14 -1.93 8.06 72.39 0.58 -1.34 16 4 C -0.11 -1.92 4.48 29.80 0.13 -1.79 16 5 C -0.13 -1.97 5.34 31.48 0.17 -1.81 16 6 C 0.09 1.67 4.96 87.52 0.43 2.10 16 7 N -0.60 -14.70 2.17 -828.71 -1.80 -16.50 16 8 C 0.51 17.59 7.70 87.64 0.67 18.27 16 9 O -0.59 -25.07 15.51 -3.03 -0.05 -25.11 16 10 C -0.13 -4.45 4.11 29.85 0.12 -4.33 16 11 C -0.08 -3.74 4.44 30.60 0.14 -3.60 16 12 C 0.03 1.55 4.97 29.85 0.15 1.69 16 13 C -0.55 -33.04 9.11 25.60 0.23 -32.81 16 14 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 15 C 0.00 0.26 5.46 84.66 0.46 0.72 16 16 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 17 Si 0.96 45.73 29.54 68.60 2.03 47.76 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 21 C 0.12 2.49 5.35 83.42 0.45 2.94 16 22 C -0.12 -2.37 3.88 28.07 0.11 -2.26 16 23 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.64 4.55 -2.39 -0.01 0.63 16 26 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 28 H 0.06 0.76 8.11 -2.39 -0.02 0.74 16 29 H 0.06 1.02 7.73 -1.93 -0.01 1.00 16 30 H 0.03 0.71 7.05 -2.08 -0.01 0.70 16 31 H 0.10 1.06 7.44 -2.59 -0.02 1.04 16 32 H 0.06 0.97 8.25 -1.70 -0.01 0.96 16 33 H 0.09 1.16 7.00 -2.36 -0.02 1.14 16 34 H 0.08 1.43 5.97 -2.23 -0.01 1.42 16 35 H 0.11 3.29 7.40 -2.39 -0.02 3.27 16 36 H 0.10 3.20 8.12 -2.38 -0.02 3.18 16 37 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 38 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 39 H 0.00 0.09 8.14 -2.39 -0.02 0.08 16 40 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.06 1.62 7.31 -1.94 -0.01 1.61 16 43 H 0.11 1.52 7.13 -2.52 -0.02 1.51 16 44 H 0.08 1.25 8.01 -2.03 -0.02 1.23 16 45 H 0.03 0.82 7.53 -2.15 -0.02 0.80 16 Total: -1.00 -72.39 340.14 5.53 -66.85 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.95 Total: 7.58 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 4.12 Total: -23.94 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -1.51 Total: -73.14 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.39 5.53 -66.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593984603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.608 kcal (2) G-P(sol) polarization free energy of solvation -72.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds