Wall clock time and date at job start Mon Mar 30 2020 07:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47350 * 2 1 4 4 C 1.52998 * 109.47229 * 239.99978 * 2 1 3 5 5 C 1.52999 * 109.46921 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47579 * 59.99872 * 5 4 2 7 7 C 1.52998 * 109.47099 * 300.00018 * 6 5 4 8 8 C 1.53001 * 109.47229 * 59.99781 * 7 6 5 9 9 H 1.09007 * 109.47145 * 59.99430 * 8 7 6 10 10 N 1.46497 * 109.47313 * 180.02562 * 8 7 6 11 11 C 1.34777 * 119.99525 * 274.99614 * 10 8 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 8 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 8 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 C 1.52997 * 109.47000 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46940 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00043 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00213 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00298 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99907 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47136 * 89.99860 * 20 18 16 22 22 H 1.48503 * 109.47098 * 209.99926 * 20 18 16 23 23 H 1.48504 * 109.46915 * 329.99781 * 20 18 16 24 24 H 1.08990 * 109.47355 * 299.99971 * 1 2 3 25 25 H 1.09002 * 109.47065 * 60.00220 * 1 2 3 26 26 H 1.09001 * 109.46721 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47368 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46857 * 299.99908 * 3 2 1 29 29 H 1.09003 * 109.47018 * 59.99620 * 3 2 1 30 30 H 1.09002 * 109.47122 * 299.99718 * 4 2 1 31 31 H 1.08998 * 109.47333 * 60.00424 * 4 2 1 32 32 H 1.09003 * 109.47063 * 179.97438 * 5 4 2 33 33 H 1.08999 * 109.47539 * 299.99851 * 5 4 2 34 34 H 1.09002 * 109.47185 * 60.00042 * 6 5 4 35 35 H 1.09001 * 109.47276 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47122 * 300.00063 * 7 6 5 37 37 H 1.08998 * 109.47333 * 179.97438 * 7 6 5 38 38 H 0.97000 * 120.00580 * 95.00360 * 10 8 7 39 39 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 40 40 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 41 41 H 1.09000 * 109.46887 * 300.00372 * 14 13 11 42 42 H 1.08998 * 109.46846 * 59.99549 * 14 13 11 43 43 H 1.08995 * 109.47672 * 299.99669 * 15 14 13 44 44 H 1.09001 * 109.47109 * 60.00906 * 15 14 13 45 45 H 0.96997 * 120.00396 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0796 -1.4433 0.0004 7 6 3.5695 -0.7221 1.2496 8 6 2.0395 -0.7216 1.2493 9 1 1.6758 -1.7492 1.2490 10 7 1.5512 -0.0304 2.4452 11 6 1.4219 -0.7025 3.6062 12 8 1.7104 -1.8792 3.6612 13 6 0.9254 0.0099 4.8379 14 6 0.8786 -0.9715 6.0108 15 6 0.3752 -0.2480 7.2613 16 6 0.3285 -1.2149 8.4164 17 1 0.6284 -2.2425 8.2730 18 6 -0.0970 -0.7877 9.6563 19 7 -0.1373 -1.6313 10.6644 20 14 -0.6164 0.9895 9.9043 21 1 -2.0706 1.1224 9.6346 22 1 -0.3332 1.3973 11.3039 23 1 0.1418 1.8615 8.9716 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.9334 -1.2360 -2.1386 33 1 3.9338 0.3057 -1.2486 34 1 3.7159 -2.4709 0.0002 35 1 5.1696 -1.4433 0.0009 36 1 3.9332 0.3055 1.2498 37 1 3.9322 -1.2363 2.1396 38 1 1.3207 0.9108 2.4013 39 1 1.5995 0.8320 5.0788 40 1 -0.0744 0.4024 4.6525 41 1 0.2046 -1.7936 5.7699 42 1 1.8785 -1.3640 6.1962 43 1 1.0495 0.5737 7.5020 44 1 -0.6247 0.1446 7.0762 45 1 -0.4370 -1.3308 11.5367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593990114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:38 Heat of formation + Delta-G solvation = -81.785694 kcal Electronic energy + Delta-G solvation = -20939.215753 eV Core-core repulsion = 17954.798674 eV Total energy + Delta-G solvation = -2984.417079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.60382 -38.64584 -34.39042 -34.15344 -33.31043 -32.05759 -30.02654 -28.23351 -27.66268 -26.39595 -23.97598 -22.49663 -21.34751 -20.33087 -19.82760 -18.76725 -16.96921 -16.47697 -16.21252 -15.41686 -15.16035 -14.71836 -14.65378 -14.14389 -13.91651 -13.60207 -13.34876 -13.16517 -13.00921 -12.59931 -12.30678 -12.19372 -11.95321 -11.87881 -11.75918 -11.55100 -11.38970 -11.19706 -10.94411 -10.75946 -10.62854 -10.48049 -10.32993 -9.95912 -9.79898 -9.66683 -9.33805 -9.09673 -8.92335 -8.48881 -5.98564 -3.96147 2.93936 3.30565 3.33085 3.40071 3.43188 4.28406 4.36969 4.49047 4.50473 4.76424 4.91104 4.99663 5.03063 5.10660 5.16202 5.29096 5.34782 5.37552 5.39490 5.48650 5.54746 5.60540 5.63123 5.65033 5.72056 5.75928 5.80628 5.88597 5.89677 5.97484 6.05283 6.11686 6.18129 6.28149 6.58752 6.60266 6.73595 6.96000 7.41237 7.49124 7.64202 7.85379 8.48792 8.61938 9.08427 9.63589 11.15223 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037699 B = 0.003369 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.555106 B = 8309.109121 C = 8623.185310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C -0.147 4.147 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.132 4.132 8 C 0.157 3.843 9 H 0.085 0.915 10 N -0.734 5.734 11 C 0.512 3.488 12 O -0.535 6.535 13 C -0.142 4.142 14 C -0.087 4.087 15 C -0.015 4.015 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.396 0.604 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.015 0.985 44 H 0.010 0.990 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 7.708 -27.000 28.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.204 4.204 4 C -0.144 4.144 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.171 4.171 8 C 0.052 3.948 9 H 0.104 0.896 10 N -0.388 5.388 11 C 0.300 3.700 12 O -0.411 6.411 13 C -0.182 4.182 14 C -0.125 4.125 15 C -0.052 4.052 16 C -0.556 4.556 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.709 3.291 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.231 0.769 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.284 6.828 -26.748 28.107 hybrid contribution -0.445 1.390 0.279 1.486 sum 4.839 8.218 -26.469 28.135 Atomic orbital electron populations 1.21865 0.94064 1.02192 1.01819 1.20786 0.95823 0.95846 0.94727 1.22000 1.01737 0.95019 1.01649 1.21564 0.95631 1.00596 0.96569 1.21614 0.95549 1.00952 0.97888 1.21490 1.00288 0.99639 0.94069 1.21973 0.95478 1.01085 0.98538 1.20883 0.93376 0.97129 0.83411 0.89647 1.46255 1.68723 1.13940 1.09835 1.21140 0.76777 0.87533 0.84550 1.90686 1.49190 1.16272 1.84958 1.21871 1.02141 1.00680 0.93536 1.21252 1.02101 0.96786 0.92329 1.19607 0.95488 0.96481 0.93611 1.21176 1.43842 0.97813 0.92772 0.90944 1.25056 0.95243 0.97395 0.95985 1.69923 1.48210 1.34925 1.01388 0.86758 0.79212 0.85910 0.77247 1.20362 1.21462 1.19049 0.92302 0.92586 0.92503 0.91676 0.92429 0.92759 0.91690 0.91641 0.92037 0.91655 0.91783 0.91873 0.91633 0.91281 0.76872 0.89509 0.89536 0.92146 0.92132 0.96698 0.97140 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.32 37.16 0.31 -0.82 16 2 C -0.07 -0.56 0.56 -154.51 -0.09 -0.64 16 3 C -0.15 -0.98 7.61 37.16 0.28 -0.70 16 4 C -0.11 -0.75 4.73 -26.73 -0.13 -0.87 16 5 C -0.12 -0.84 5.65 -26.73 -0.15 -0.99 16 6 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 7 C -0.13 -1.35 5.22 -26.73 -0.14 -1.48 16 8 C 0.16 1.65 1.59 -67.93 -0.11 1.54 16 9 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 10 N -0.73 -8.34 4.30 -53.80 -0.23 -8.57 16 11 C 0.51 7.99 7.79 -10.98 -0.09 7.91 16 12 O -0.54 -10.59 15.65 5.55 0.09 -10.50 16 13 C -0.14 -2.24 5.70 -27.88 -0.16 -2.40 16 14 C -0.09 -1.83 4.44 -26.73 -0.12 -1.95 16 15 C -0.01 -0.35 4.04 -27.88 -0.11 -0.47 16 16 C -0.52 -15.32 9.66 -34.44 -0.33 -15.65 16 17 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 20 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 24 H 0.06 0.49 7.44 -51.93 -0.39 0.10 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.44 4.81 -51.93 -0.25 0.19 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.35 6.50 -51.93 -0.34 0.01 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.61 6.43 -51.93 -0.33 0.27 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.40 3.52 6.65 -40.82 -0.27 3.25 16 39 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 42 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 43 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 44 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 45 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -33.41 341.51 -8.13 -41.54 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.15 Total: -1.16 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -1.08 Total: -15.86 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.54 Total: -36.45 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.41 -8.13 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593990114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.244 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds