Wall clock time and date at job start Mon Mar 30 2020 07:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47350 * 2 1 4 4 C 1.52998 * 109.47229 * 239.99978 * 2 1 3 5 5 C 1.52999 * 109.46921 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47579 * 59.99872 * 5 4 2 7 7 C 1.52998 * 109.47099 * 300.00018 * 6 5 4 8 8 C 1.53001 * 109.47229 * 59.99781 * 7 6 5 9 9 H 1.09007 * 109.47145 * 59.99430 * 8 7 6 10 10 N 1.46497 * 109.47313 * 180.02562 * 8 7 6 11 11 C 1.34777 * 119.99525 * 274.99614 * 10 8 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 8 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 8 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 C 1.52997 * 109.47000 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46940 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00043 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00213 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00298 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99907 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47136 * 89.99860 * 20 18 16 22 22 H 1.48503 * 109.47098 * 209.99926 * 20 18 16 23 23 H 1.48504 * 109.46915 * 329.99781 * 20 18 16 24 24 H 1.08990 * 109.47355 * 299.99971 * 1 2 3 25 25 H 1.09002 * 109.47065 * 60.00220 * 1 2 3 26 26 H 1.09001 * 109.46721 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47368 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46857 * 299.99908 * 3 2 1 29 29 H 1.09003 * 109.47018 * 59.99620 * 3 2 1 30 30 H 1.09002 * 109.47122 * 299.99718 * 4 2 1 31 31 H 1.08998 * 109.47333 * 60.00424 * 4 2 1 32 32 H 1.09003 * 109.47063 * 179.97438 * 5 4 2 33 33 H 1.08999 * 109.47539 * 299.99851 * 5 4 2 34 34 H 1.09002 * 109.47185 * 60.00042 * 6 5 4 35 35 H 1.09001 * 109.47276 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47122 * 300.00063 * 7 6 5 37 37 H 1.08998 * 109.47333 * 179.97438 * 7 6 5 38 38 H 0.97000 * 120.00580 * 95.00360 * 10 8 7 39 39 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 40 40 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 41 41 H 1.09000 * 109.46887 * 300.00372 * 14 13 11 42 42 H 1.08998 * 109.46846 * 59.99549 * 14 13 11 43 43 H 1.08995 * 109.47672 * 299.99669 * 15 14 13 44 44 H 1.09001 * 109.47109 * 60.00906 * 15 14 13 45 45 H 0.96997 * 120.00396 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0796 -1.4433 0.0004 7 6 3.5695 -0.7221 1.2496 8 6 2.0395 -0.7216 1.2493 9 1 1.6758 -1.7492 1.2490 10 7 1.5512 -0.0304 2.4452 11 6 1.4219 -0.7025 3.6062 12 8 1.7104 -1.8792 3.6612 13 6 0.9254 0.0099 4.8379 14 6 0.8786 -0.9715 6.0108 15 6 0.3752 -0.2480 7.2613 16 6 0.3285 -1.2149 8.4164 17 1 0.6284 -2.2425 8.2730 18 6 -0.0970 -0.7877 9.6563 19 7 -0.1373 -1.6313 10.6644 20 14 -0.6164 0.9895 9.9043 21 1 -2.0706 1.1224 9.6346 22 1 -0.3332 1.3973 11.3039 23 1 0.1418 1.8615 8.9716 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.9334 -1.2360 -2.1386 33 1 3.9338 0.3057 -1.2486 34 1 3.7159 -2.4709 0.0002 35 1 5.1696 -1.4433 0.0009 36 1 3.9332 0.3055 1.2498 37 1 3.9322 -1.2363 2.1396 38 1 1.3207 0.9108 2.4013 39 1 1.5995 0.8320 5.0788 40 1 -0.0744 0.4024 4.6525 41 1 0.2046 -1.7936 5.7699 42 1 1.8785 -1.3640 6.1962 43 1 1.0495 0.5737 7.5020 44 1 -0.6247 0.1446 7.0762 45 1 -0.4370 -1.3308 11.5367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593990114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:37 Heat of formation + Delta-G solvation = -102.864974 kcal Electronic energy + Delta-G solvation = -20940.129819 eV Core-core repulsion = 17954.798674 eV Total energy + Delta-G solvation = -2985.331145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51465 -39.73573 -36.15826 -35.21857 -34.12249 -34.05091 -31.11428 -29.74342 -28.23132 -27.20605 -25.60512 -23.55178 -22.12321 -21.86036 -21.19052 -19.57820 -18.86698 -17.86451 -17.18770 -16.72599 -16.30151 -15.86568 -15.50791 -15.42655 -15.03279 -14.77554 -14.68409 -14.33608 -13.92794 -13.88698 -13.71964 -13.23866 -12.92892 -12.80717 -12.70242 -12.55018 -12.44484 -12.35058 -12.10489 -11.86643 -11.78063 -11.72156 -11.50268 -11.33763 -11.28332 -11.17482 -11.07081 -10.75229 -10.65085 -9.95882 -8.27950 -6.33766 1.38287 1.42092 1.54261 1.70327 2.25872 2.39138 3.07068 3.58056 3.71297 3.87424 3.91676 4.10599 4.16079 4.23264 4.26367 4.35983 4.42493 4.45149 4.53450 4.73557 4.77434 4.82759 4.84498 4.91673 4.95081 4.96569 5.03674 5.05825 5.09614 5.11240 5.16663 5.21728 5.25346 5.36924 5.41926 5.45010 5.53062 5.59940 5.61015 5.66945 5.68107 6.30610 6.62048 6.75032 7.30436 7.34717 8.89900 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037699 B = 0.003369 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.555106 B = 8309.109121 C = 8623.185310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.128 4.128 8 C 0.155 3.845 9 H 0.053 0.947 10 N -0.712 5.712 11 C 0.511 3.489 12 O -0.589 6.589 13 C -0.132 4.132 14 C -0.080 4.080 15 C -0.008 4.008 16 C -0.541 4.541 17 H 0.018 0.982 18 C -0.004 4.004 19 N -0.958 5.958 20 Si 0.963 3.037 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.235 1.235 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.413 0.587 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.029 0.971 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.762 11.921 -29.334 32.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.167 4.167 8 C 0.050 3.950 9 H 0.071 0.929 10 N -0.365 5.365 11 C 0.299 3.701 12 O -0.469 6.469 13 C -0.171 4.171 14 C -0.118 4.118 15 C -0.046 4.046 16 C -0.579 4.579 17 H 0.036 0.964 18 C -0.200 4.200 19 N -0.599 5.599 20 Si 0.785 3.215 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.158 1.158 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.252 0.748 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.922 11.076 -29.137 31.558 hybrid contribution -0.299 -0.072 1.003 1.049 sum 4.623 11.004 -28.134 30.561 Atomic orbital electron populations 1.21879 0.94025 1.01468 1.02613 1.20750 0.95776 0.96643 0.93264 1.22010 1.01893 0.93691 1.02722 1.21589 0.95828 1.00166 0.96794 1.21592 0.95278 1.01473 0.97097 1.21494 1.00746 0.98950 0.94266 1.21924 0.95055 1.01729 0.97974 1.20962 0.93716 0.95980 0.84301 0.92881 1.46046 1.67043 1.14554 1.08837 1.21155 0.76386 0.86853 0.85659 1.90680 1.51784 1.18603 1.85813 1.21729 1.04724 0.99566 0.91117 1.21031 0.99734 0.97284 0.93789 1.19542 0.96892 0.95636 0.92511 1.21567 1.44034 0.96814 0.95461 0.96366 1.26217 0.94947 1.03619 0.95202 1.70109 1.49493 1.38030 1.02230 0.85477 0.79608 0.78590 0.77831 1.18854 1.21168 1.15833 0.92497 0.90781 0.94044 0.91450 0.90875 0.92240 0.92802 0.89766 0.90907 0.90393 0.93209 0.91130 0.90004 0.94743 0.74844 0.86601 0.86560 0.94685 0.94710 0.95100 0.95234 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.32 71.98 0.60 -1.37 16 2 C -0.06 -0.86 0.56 -52.18 -0.03 -0.89 16 3 C -0.15 -1.40 7.61 71.98 0.55 -0.86 16 4 C -0.11 -1.26 4.73 30.59 0.14 -1.12 16 5 C -0.12 -1.33 5.65 30.59 0.17 -1.16 16 6 C -0.12 -1.89 5.92 30.59 0.18 -1.71 16 7 C -0.13 -2.56 5.22 30.59 0.16 -2.40 16 8 C 0.16 3.19 1.59 44.99 0.07 3.27 16 9 H 0.05 1.46 7.58 -2.38 -0.02 1.44 16 10 N -0.71 -15.16 4.30 -442.52 -1.90 -17.07 16 11 C 0.51 15.79 7.79 87.66 0.68 16.47 16 12 O -0.59 -24.46 15.65 -3.04 -0.05 -24.50 16 13 C -0.13 -3.87 5.70 29.85 0.17 -3.70 16 14 C -0.08 -3.43 4.44 30.59 0.14 -3.30 16 15 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 16 C -0.54 -33.03 9.66 25.60 0.25 -32.78 16 17 H 0.02 1.25 7.99 -2.91 -0.02 1.22 16 18 C 0.00 -0.25 5.47 84.65 0.46 0.22 16 19 N -0.96 -62.53 13.96 21.45 0.30 -62.23 16 20 Si 0.96 44.29 27.47 68.60 1.88 46.18 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 24 H 0.06 0.80 7.44 -2.39 -0.02 0.78 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.64 4.81 -2.39 -0.01 0.63 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.52 6.50 -2.39 -0.02 0.50 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.73 6.43 -2.39 -0.02 0.72 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.35 6.43 -2.39 -0.02 1.34 16 37 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.41 6.04 6.65 -92.71 -0.62 5.42 16 39 H 0.12 2.79 8.14 -2.38 -0.02 2.77 16 40 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.03 1.63 8.10 -2.39 -0.02 1.61 16 42 H 0.03 1.62 8.10 -2.39 -0.02 1.60 16 43 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 44 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 45 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -77.76 341.51 4.17 -73.59 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.27 Total: 13.65 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 3.67 Total: -29.62 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -1.61 Total: -79.30 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.05 Total: -24.50 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -77.76 4.17 -73.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593990114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.274 kcal (2) G-P(sol) polarization free energy of solvation -77.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds