Wall clock time and date at job start Mon Mar 30 2020 07:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47085 * 2 1 4 4 C 1.52998 * 109.47408 * 240.00387 * 2 1 3 5 5 C 1.53005 * 109.46681 * 299.99860 * 4 2 1 6 6 C 1.52998 * 109.47340 * 300.00106 * 5 4 2 7 7 C 1.52998 * 109.47164 * 59.99924 * 6 5 4 8 8 C 1.53001 * 109.47113 * 119.99611 * 2 1 3 9 9 H 1.09001 * 109.47009 * 179.97438 * 8 2 1 10 10 N 1.46497 * 109.47201 * 300.00482 * 8 2 1 11 11 C 1.34777 * 119.99525 * 204.99403 * 10 8 2 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 8 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 8 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 C 1.52997 * 109.47000 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46940 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00043 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00213 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00201 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46991 * 59.99818 * 20 18 16 22 22 H 1.48498 * 109.47276 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47240 * 300.00255 * 20 18 16 24 24 H 1.08998 * 109.46712 * 300.00090 * 1 2 3 25 25 H 1.09002 * 109.46656 * 59.99745 * 1 2 3 26 26 H 1.08997 * 109.46649 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47191 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47131 * 299.99874 * 3 2 1 29 29 H 1.09003 * 109.46937 * 59.99813 * 3 2 1 30 30 H 1.09002 * 109.47313 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47394 * 59.99767 * 4 2 1 32 32 H 1.09003 * 109.46937 * 180.02562 * 5 4 2 33 33 H 1.08994 * 109.47191 * 60.00155 * 5 4 2 34 34 H 1.09008 * 109.46859 * 300.00217 * 6 5 4 35 35 H 1.08994 * 109.47717 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.47238 * 180.02562 * 7 6 5 37 37 H 1.08994 * 109.46965 * 60.00198 * 7 6 5 38 38 H 0.97000 * 120.00580 * 25.00149 * 10 8 2 39 39 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 40 40 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 41 41 H 1.09000 * 109.46887 * 300.00372 * 14 13 11 42 42 H 1.08998 * 109.46846 * 59.99549 * 14 13 11 43 43 H 1.08995 * 109.47672 * 299.99669 * 15 14 13 44 44 H 1.09001 * 109.47109 * 60.00906 * 15 14 13 45 45 H 0.97000 * 120.00572 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 1.2492 8 6 2.0400 -0.7212 1.2493 9 1 3.1301 -0.7216 1.2491 10 7 1.5516 -0.0306 2.4454 11 6 2.2284 -0.1334 3.6064 12 8 3.2420 -0.7973 3.6608 13 6 1.7294 0.5820 4.8353 14 6 2.6765 0.3073 6.0052 15 6 2.1702 1.0342 7.2527 16 6 3.1026 0.7631 8.4051 17 1 3.9699 0.1356 8.2620 18 6 2.8487 1.3163 9.6422 19 7 1.7924 2.0800 9.8168 20 14 4.0049 0.9809 11.0705 21 1 5.3655 1.4699 10.7313 22 1 3.5128 1.6852 12.2817 23 1 4.0554 -0.4797 11.3341 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1301 -0.7215 -1.2490 31 1 1.6768 -0.2073 -2.1392 32 1 1.8938 -2.6776 -2.1390 33 1 0.4402 -2.1637 -1.2493 34 1 3.1301 -2.8849 0.0000 35 1 1.6771 -3.9127 -0.0002 36 1 1.8937 -2.6773 2.1392 37 1 0.4401 -2.1638 1.2492 38 1 0.7412 0.5006 2.4019 39 1 1.6925 1.6541 4.6418 40 1 0.7308 0.2231 5.0844 41 1 2.7135 -0.7647 6.1987 42 1 3.6751 0.6662 5.7562 43 1 2.1336 2.1061 7.0589 44 1 1.1715 0.6756 7.5019 45 1 1.6134 2.4689 10.6872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593990115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:41 Heat of formation + Delta-G solvation = -85.715478 kcal Electronic energy + Delta-G solvation = -20887.836342 eV Core-core repulsion = 17903.248855 eV Total energy + Delta-G solvation = -2984.587487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.55467 -38.57960 -34.29831 -34.07075 -33.26825 -32.00146 -29.91158 -27.83554 -27.57277 -26.30983 -23.98778 -22.56648 -21.32574 -20.41922 -19.75888 -18.70990 -16.87916 -16.19547 -16.03321 -15.32356 -15.11645 -14.66634 -14.58517 -14.35537 -13.85147 -13.60530 -13.29807 -13.09155 -12.91256 -12.28518 -12.20771 -12.15789 -11.81274 -11.77783 -11.71028 -11.39626 -11.27458 -11.15322 -10.75666 -10.62053 -10.56094 -10.51995 -10.44343 -10.29116 -9.63283 -9.59439 -9.21298 -8.97797 -8.86632 -8.29148 -5.95036 -3.96375 3.01195 3.37048 3.38431 3.41636 3.45917 4.32242 4.40514 4.51415 4.54440 4.79564 4.94400 5.03117 5.09035 5.14261 5.21376 5.33908 5.40876 5.41113 5.44298 5.52129 5.59074 5.66984 5.75107 5.76216 5.77294 5.79717 5.84409 5.91957 5.93066 6.01042 6.09252 6.17049 6.28957 6.34617 6.64901 6.77421 6.98053 7.20588 7.70221 7.74743 7.87431 8.05920 8.49931 8.55993 9.10593 9.67370 11.16482 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040884 B = 0.003173 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.697943 B = 8822.967614 C = 9112.116737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C -0.142 4.142 4 C -0.105 4.105 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.132 4.132 8 C 0.157 3.843 9 H 0.085 0.915 10 N -0.734 5.734 11 C 0.513 3.487 12 O -0.539 6.539 13 C -0.139 4.139 14 C -0.094 4.094 15 C 0.021 3.979 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.397 0.603 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.015 0.985 44 H 0.015 0.985 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 -4.623 -24.752 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.199 4.199 4 C -0.143 4.143 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.171 4.171 8 C 0.052 3.948 9 H 0.103 0.897 10 N -0.387 5.387 11 C 0.300 3.700 12 O -0.415 6.415 13 C -0.179 4.179 14 C -0.132 4.132 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.232 0.768 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.038 -4.990 -24.555 25.380 hybrid contribution 0.123 0.161 0.834 0.858 sum -3.915 -4.829 -23.721 24.522 Atomic orbital electron populations 1.22002 0.94399 1.02324 1.01687 1.20784 0.96072 0.95618 0.94694 1.21866 1.01289 0.94929 1.01857 1.21564 1.00824 0.95355 0.96600 1.21614 1.01020 0.95511 0.97853 1.21488 1.01056 0.98811 0.94114 1.21974 1.00989 0.95636 0.98472 1.20872 0.99584 0.90869 0.83490 0.89715 1.46264 1.29634 1.53084 1.09767 1.21232 0.83451 0.80693 0.84575 1.90666 1.24875 1.40962 1.84965 1.21845 1.02086 1.00675 0.93321 1.21431 0.97223 1.01101 0.93470 1.19126 0.96424 0.95299 0.90793 1.21248 1.09854 1.29900 0.94643 0.92641 1.25018 0.95426 0.95232 0.98828 1.69951 1.27018 1.33178 1.23665 0.86654 0.81229 0.78433 0.81674 1.20226 1.21343 1.20231 0.92692 0.92444 0.91698 0.92544 0.92594 0.92242 0.91725 0.91653 0.92073 0.91641 0.91834 0.91911 0.91320 0.91615 0.76829 0.89520 0.89516 0.92765 0.92770 0.96649 0.96649 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 7.61 37.16 0.28 -0.76 16 2 C -0.07 -0.58 0.56 -154.50 -0.09 -0.67 16 3 C -0.14 -1.19 8.32 37.16 0.31 -0.88 16 4 C -0.11 -0.77 4.73 -26.73 -0.13 -0.90 16 5 C -0.12 -0.87 5.65 -26.73 -0.15 -1.02 16 6 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 7 C -0.13 -1.39 5.22 -26.73 -0.14 -1.53 16 8 C 0.16 1.72 1.59 -67.93 -0.11 1.61 16 9 H 0.08 1.14 7.58 -51.93 -0.39 0.74 16 10 N -0.73 -8.78 4.30 -53.80 -0.23 -9.02 16 11 C 0.51 8.35 7.79 -10.98 -0.09 8.26 16 12 O -0.54 -10.91 15.65 5.55 0.09 -10.82 16 13 C -0.14 -2.35 5.70 -27.88 -0.16 -2.51 16 14 C -0.09 -2.08 4.44 -26.73 -0.12 -2.20 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 20 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.05 0.38 6.50 -51.93 -0.34 0.04 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.46 4.81 -51.93 -0.25 0.21 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.52 7.45 -51.93 -0.39 0.14 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 34 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.63 6.43 -51.93 -0.33 0.30 16 38 H 0.40 3.80 6.65 -40.82 -0.27 3.53 16 39 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.05 1.25 8.10 -51.93 -0.42 0.82 16 42 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -32.68 345.11 -8.50 -41.18 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -8.19 Total: -1.77 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.09 Total: -15.36 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.50 Total: -35.67 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.68 -8.50 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593990115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.533 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds