Wall clock time and date at job start Mon Mar 30 2020 07:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47085 * 2 1 4 4 C 1.52998 * 109.47408 * 240.00387 * 2 1 3 5 5 C 1.53005 * 109.46681 * 299.99860 * 4 2 1 6 6 C 1.52998 * 109.47340 * 300.00106 * 5 4 2 7 7 C 1.52998 * 109.47164 * 59.99924 * 6 5 4 8 8 C 1.53001 * 109.47113 * 119.99611 * 2 1 3 9 9 H 1.09001 * 109.47009 * 179.97438 * 8 2 1 10 10 N 1.46497 * 109.47201 * 300.00482 * 8 2 1 11 11 C 1.34777 * 119.99525 * 204.99403 * 10 8 2 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 8 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 8 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 C 1.52997 * 109.47000 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46940 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00043 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00213 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00201 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46991 * 59.99818 * 20 18 16 22 22 H 1.48498 * 109.47276 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47240 * 300.00255 * 20 18 16 24 24 H 1.08998 * 109.46712 * 300.00090 * 1 2 3 25 25 H 1.09002 * 109.46656 * 59.99745 * 1 2 3 26 26 H 1.08997 * 109.46649 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47191 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47131 * 299.99874 * 3 2 1 29 29 H 1.09003 * 109.46937 * 59.99813 * 3 2 1 30 30 H 1.09002 * 109.47313 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47394 * 59.99767 * 4 2 1 32 32 H 1.09003 * 109.46937 * 180.02562 * 5 4 2 33 33 H 1.08994 * 109.47191 * 60.00155 * 5 4 2 34 34 H 1.09008 * 109.46859 * 300.00217 * 6 5 4 35 35 H 1.08994 * 109.47717 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.47238 * 180.02562 * 7 6 5 37 37 H 1.08994 * 109.46965 * 60.00198 * 7 6 5 38 38 H 0.97000 * 120.00580 * 25.00149 * 10 8 2 39 39 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 40 40 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 41 41 H 1.09000 * 109.46887 * 300.00372 * 14 13 11 42 42 H 1.08998 * 109.46846 * 59.99549 * 14 13 11 43 43 H 1.08995 * 109.47672 * 299.99669 * 15 14 13 44 44 H 1.09001 * 109.47109 * 60.00906 * 15 14 13 45 45 H 0.97000 * 120.00572 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 1.2492 8 6 2.0400 -0.7212 1.2493 9 1 3.1301 -0.7216 1.2491 10 7 1.5516 -0.0306 2.4454 11 6 2.2284 -0.1334 3.6064 12 8 3.2420 -0.7973 3.6608 13 6 1.7294 0.5820 4.8353 14 6 2.6765 0.3073 6.0052 15 6 2.1702 1.0342 7.2527 16 6 3.1026 0.7631 8.4051 17 1 3.9699 0.1356 8.2620 18 6 2.8487 1.3163 9.6422 19 7 1.7924 2.0800 9.8168 20 14 4.0049 0.9809 11.0705 21 1 5.3655 1.4699 10.7313 22 1 3.5128 1.6852 12.2817 23 1 4.0554 -0.4797 11.3341 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1301 -0.7215 -1.2490 31 1 1.6768 -0.2073 -2.1392 32 1 1.8938 -2.6776 -2.1390 33 1 0.4402 -2.1637 -1.2493 34 1 3.1301 -2.8849 0.0000 35 1 1.6771 -3.9127 -0.0002 36 1 1.8937 -2.6773 2.1392 37 1 0.4401 -2.1638 1.2492 38 1 0.7412 0.5006 2.4019 39 1 1.6925 1.6541 4.6418 40 1 0.7308 0.2231 5.0844 41 1 2.7135 -0.7647 6.1987 42 1 3.6751 0.6662 5.7562 43 1 2.1336 2.1061 7.0589 44 1 1.1715 0.6756 7.5019 45 1 1.6134 2.4689 10.6872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593990115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:40 Heat of formation + Delta-G solvation = -104.821784 kcal Electronic energy + Delta-G solvation = -20888.664854 eV Core-core repulsion = 17903.248855 eV Total energy + Delta-G solvation = -2985.415999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.51297 -39.72943 -36.14324 -35.21075 -34.05195 -34.01014 -30.96363 -29.42839 -28.23298 -27.18440 -25.75990 -23.65603 -22.20521 -21.89908 -21.16769 -19.54953 -18.54577 -17.77532 -17.18854 -16.70485 -16.49649 -15.87881 -15.49291 -15.44110 -15.00882 -14.76964 -14.32652 -14.23469 -13.94758 -13.88945 -13.65599 -13.12393 -12.92779 -12.80633 -12.64313 -12.51822 -12.47392 -12.42781 -12.34499 -12.09992 -11.85121 -11.56511 -11.46081 -11.31492 -11.24422 -11.16990 -11.06512 -10.62731 -10.54667 -9.95807 -8.20665 -6.30874 1.38913 1.42018 1.50157 1.69171 2.24938 2.41937 3.12065 3.58222 3.71533 3.87771 3.92425 4.11176 4.20978 4.24479 4.27256 4.36219 4.42841 4.45850 4.54052 4.73962 4.78686 4.83559 4.84449 4.94939 4.96766 5.05640 5.09252 5.10071 5.11688 5.16952 5.18933 5.22003 5.25818 5.37214 5.41937 5.45373 5.52314 5.59689 5.66892 5.74819 5.86220 6.27042 6.60571 6.84268 7.32573 7.37819 8.90728 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040884 B = 0.003173 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.697943 B = 8822.967614 C = 9112.116737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.143 4.143 4 C -0.105 4.105 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.128 4.128 8 C 0.155 3.845 9 H 0.055 0.945 10 N -0.713 5.713 11 C 0.515 3.485 12 O -0.585 6.585 13 C -0.131 4.131 14 C -0.081 4.081 15 C 0.027 3.973 16 C -0.550 4.550 17 H 0.050 0.950 18 C 0.004 3.996 19 N -0.929 5.929 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.080 0.920 38 H 0.412 0.588 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.001 0.999 44 H 0.001 0.999 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.697 -4.512 -26.181 27.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C -0.200 4.200 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.167 4.167 8 C 0.050 3.950 9 H 0.073 0.927 10 N -0.365 5.365 11 C 0.303 3.697 12 O -0.465 6.465 13 C -0.171 4.171 14 C -0.120 4.120 15 C -0.010 4.010 16 C -0.588 4.588 17 H 0.069 0.931 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.786 3.214 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.250 0.750 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.078 -4.866 -26.024 26.958 hybrid contribution 0.418 0.137 1.251 1.326 sum -4.660 -4.730 -24.773 25.647 Atomic orbital electron populations 1.22013 0.92889 1.02825 1.02626 1.20751 0.97144 0.95176 0.93364 1.21880 1.00486 0.95115 1.02517 1.21584 1.00371 0.95670 0.96668 1.21594 1.01636 0.95071 0.97161 1.21487 1.00361 0.99369 0.94143 1.21927 1.01702 0.94980 0.98091 1.20985 0.98088 0.91732 0.84174 0.92650 1.46063 1.29367 1.52243 1.08857 1.21040 0.83039 0.80153 0.85460 1.90655 1.27010 1.43127 1.85730 1.21685 1.01485 1.02167 0.91760 1.21147 0.97609 0.99322 0.93884 1.19009 0.95297 0.94680 0.92033 1.21672 1.10471 1.30398 0.96249 0.93130 1.25909 0.97112 0.94746 1.01684 1.70056 1.28486 1.33737 1.24644 0.85554 0.79077 0.78651 0.78097 1.19428 1.20247 1.19436 0.92484 0.90854 0.91399 0.93897 0.90758 0.92754 0.92656 0.89781 0.90806 0.90493 0.93056 0.91088 0.94635 0.90174 0.75000 0.87521 0.87524 0.94262 0.94264 0.98070 0.98077 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 7.61 71.98 0.55 -1.07 16 2 C -0.06 -0.93 0.56 -52.18 -0.03 -0.96 16 3 C -0.14 -2.15 8.32 71.98 0.60 -1.55 16 4 C -0.11 -1.31 4.73 30.60 0.14 -1.16 16 5 C -0.12 -1.38 5.65 30.60 0.17 -1.21 16 6 C -0.12 -1.90 5.92 30.59 0.18 -1.72 16 7 C -0.13 -2.66 5.22 30.60 0.16 -2.50 16 8 C 0.15 3.34 1.59 44.99 0.07 3.41 16 9 H 0.06 1.55 7.58 -2.39 -0.02 1.53 16 10 N -0.71 -16.53 4.30 -442.52 -1.90 -18.44 16 11 C 0.52 16.89 7.79 87.66 0.68 17.57 16 12 O -0.59 -24.60 15.65 -3.04 -0.05 -24.65 16 13 C -0.13 -4.39 5.70 29.85 0.17 -4.22 16 14 C -0.08 -3.69 4.44 30.59 0.14 -3.56 16 15 C 0.03 1.45 4.97 29.85 0.15 1.60 16 16 C -0.55 -32.93 9.11 25.60 0.23 -32.70 16 17 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 18 C 0.00 0.21 5.46 84.65 0.46 0.67 16 19 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 20 Si 0.96 45.70 29.54 68.60 2.03 47.72 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 H 0.06 0.61 6.50 -2.39 -0.02 0.59 16 25 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 0.73 4.81 -2.39 -0.01 0.72 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.86 7.45 -2.39 -0.02 0.85 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.77 6.43 -2.39 -0.02 0.75 16 34 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.41 6.43 -2.39 -0.02 1.40 16 38 H 0.41 7.11 6.65 -92.71 -0.62 6.49 16 39 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 40 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 42 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -72.00 345.11 4.37 -67.63 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.33 Total: 11.81 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 3.68 Total: -27.38 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -1.62 Total: -75.13 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.00 4.37 -67.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593990115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.191 kcal (2) G-P(sol) polarization free energy of solvation -71.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds