Wall clock time and date at job start Mon Mar 30 2020 07:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47338 * 2 1 4 4 N 1.46497 * 109.46992 * 60.00083 * 3 2 1 5 5 C 1.34777 * 119.99525 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00463 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99675 * 179.72583 * 5 4 3 8 8 C 1.53004 * 109.47208 * 180.27843 * 7 5 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46940 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00213 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00116 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00201 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.46991 * 59.99818 * 14 12 10 16 16 H 1.48498 * 109.47276 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47240 * 300.00255 * 14 12 10 18 18 C 1.53006 * 109.46977 * 120.00210 * 2 1 3 19 19 C 1.52999 * 109.47258 * 59.99740 * 18 2 1 20 20 C 1.52998 * 109.47306 * 60.00015 * 19 18 2 21 21 C 1.53006 * 109.46950 * 300.00173 * 20 19 18 22 22 C 1.52998 * 109.46903 * 239.99777 * 2 1 3 23 23 H 1.09003 * 109.47465 * 59.99650 * 1 2 3 24 24 H 1.09001 * 109.47749 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46864 * 300.00020 * 1 2 3 26 26 H 1.08995 * 109.46838 * 299.99971 * 3 2 1 27 27 H 1.09001 * 109.46617 * 180.02562 * 3 2 1 28 28 H 0.97000 * 120.00580 * 0.02562 * 4 3 2 29 29 H 1.09009 * 109.47352 * 300.27556 * 7 5 4 30 30 H 1.08998 * 109.47585 * 60.27844 * 7 5 4 31 31 H 1.09000 * 109.46887 * 300.00372 * 8 7 5 32 32 H 1.08998 * 109.46846 * 59.99549 * 8 7 5 33 33 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 34 34 H 1.09001 * 109.47109 * 60.00906 * 9 8 7 35 35 H 0.97000 * 120.00572 * 179.97438 * 13 12 10 36 36 H 1.09007 * 109.46697 * 179.97438 * 18 2 1 37 37 H 1.08998 * 109.46912 * 299.99187 * 18 2 1 38 38 H 1.09001 * 109.47054 * 300.00043 * 19 18 2 39 39 H 1.08995 * 109.46838 * 180.02562 * 19 18 2 40 40 H 1.08994 * 109.47484 * 180.02562 * 20 19 18 41 41 H 1.09007 * 109.47220 * 59.99607 * 20 19 18 42 42 H 1.09001 * 109.47123 * 299.99797 * 21 20 19 43 43 H 1.09003 * 109.47135 * 179.97438 * 21 20 19 44 44 H 1.08995 * 109.47215 * 60.00065 * 22 2 1 45 45 H 1.09001 * 109.47513 * 180.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1330 1.1962 5 6 1.8778 3.4232 1.4096 6 8 2.5751 4.0126 0.6113 7 6 1.3704 4.1355 2.6370 8 6 1.8764 5.5794 2.6345 9 6 1.3607 6.3026 3.8802 10 6 1.8596 7.7247 3.8780 11 1 2.4819 8.0775 3.0688 12 6 1.5217 8.5754 4.9090 13 7 0.7644 8.1458 5.8947 14 14 2.1395 10.3383 4.9060 15 1 1.6455 11.0338 3.6904 16 1 1.6402 11.0400 6.1157 17 1 3.6245 10.3425 4.9095 18 6 2.0399 -0.7213 1.2493 19 6 1.5299 -2.1638 1.2493 20 6 2.0398 -2.8851 0.0001 21 6 1.5298 -2.1638 -1.2492 22 6 2.0399 -0.7213 -1.2492 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6767 1.9562 -0.8900 27 1 3.1300 1.4423 -0.0005 28 1 0.9943 1.6616 1.8349 29 1 0.2804 4.1325 2.6343 30 1 1.7329 3.6251 3.5292 31 1 2.9664 5.5824 2.6371 32 1 1.5139 6.0898 1.7422 33 1 0.2708 6.2997 3.8771 34 1 1.7231 5.7924 4.7726 35 1 0.5270 8.7442 6.6203 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2074 2.1392 38 1 0.4399 -2.1637 1.2493 39 1 1.8928 -2.6774 2.1395 40 1 1.6761 -3.9126 -0.0002 41 1 3.1299 -2.8851 0.0000 42 1 0.4398 -2.1637 -1.2492 43 1 1.8935 -2.6774 -2.1392 44 1 1.6766 -0.2075 -2.1392 45 1 3.1299 -0.7218 -1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593990347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:51 Heat of formation + Delta-G solvation = -89.185705 kcal Electronic energy + Delta-G solvation = -20420.306180 eV Core-core repulsion = 17435.568212 eV Total energy + Delta-G solvation = -2984.737967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29557 -38.90103 -34.99872 -34.10578 -32.25139 -31.78932 -31.08148 -28.17721 -27.32601 -25.83290 -23.62885 -22.96026 -21.36343 -20.47769 -19.71386 -18.65528 -17.01196 -16.09222 -15.88199 -15.60017 -15.23339 -14.90155 -14.75796 -14.39921 -14.17392 -13.62226 -13.29722 -13.07854 -13.01226 -12.51415 -12.27000 -12.21850 -11.89905 -11.79335 -11.69528 -11.34133 -11.32954 -11.23795 -10.75587 -10.59019 -10.52204 -10.51150 -10.39799 -10.28858 -9.63416 -9.63046 -9.22363 -8.98617 -8.91465 -8.29096 -5.94992 -3.96315 3.00749 3.38507 3.38619 3.41699 3.46070 4.26053 4.32734 4.38426 4.51629 4.74650 4.88876 4.92749 5.00971 5.04951 5.20186 5.21359 5.31756 5.34450 5.40916 5.48629 5.59111 5.63014 5.68886 5.72087 5.75039 5.78551 5.79164 5.82699 5.84347 5.91783 5.99477 6.08687 6.21936 6.31416 6.57243 6.77384 6.97948 7.20551 7.67635 7.74433 7.87458 8.05967 8.49912 8.54038 9.10645 9.67416 11.16538 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.050724 B = 0.002761 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.876753 B =10137.100435 C =10385.025745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 C 0.129 3.871 4 N -0.738 5.738 5 C 0.511 3.489 6 O -0.540 6.540 7 C -0.139 4.139 8 C -0.095 4.095 9 C 0.021 3.979 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.107 4.107 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.398 0.602 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -24.582 -11.548 27.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 C 0.005 3.995 4 N -0.392 5.392 5 C 0.299 3.701 6 O -0.416 6.416 7 C -0.179 4.179 8 C -0.133 4.133 9 C -0.016 4.016 10 C -0.556 4.556 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.147 4.147 19 C -0.159 4.159 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.145 4.145 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.233 0.767 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.422 -24.080 -11.969 26.894 hybrid contribution 0.022 0.717 0.410 0.826 sum -0.400 -23.363 -11.559 26.069 Atomic orbital electron populations 1.21987 0.94143 1.02077 1.02122 1.20783 0.96270 0.93879 0.96206 1.21316 0.98980 0.90760 0.88417 1.46180 1.54858 1.12667 1.25495 1.21246 0.79665 0.81032 0.88184 1.90672 1.37641 1.66011 1.47270 1.21841 1.02155 0.99176 0.94709 1.21436 1.00358 0.90488 1.00984 1.19127 0.96271 0.94680 0.91571 1.21248 1.31119 0.96327 1.06938 0.92638 1.25019 0.95256 0.98651 0.95593 1.69951 1.37097 1.35931 1.10841 0.86652 0.79226 0.84813 0.77284 1.20227 1.21343 1.20234 1.21606 1.00902 0.95289 0.96953 1.21580 1.01035 0.95524 0.97746 1.21538 1.00788 0.98670 0.94734 1.21563 1.01048 0.95371 0.97753 1.21514 1.00818 0.95375 0.96747 0.92461 0.91775 0.92534 0.91772 0.91824 0.76724 0.89472 0.89481 0.92744 0.92753 0.96633 0.96633 0.93030 0.91700 0.91773 0.91625 0.92073 0.92256 0.92071 0.91625 0.92105 0.91667 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 7.61 37.15 0.28 -0.79 16 2 C -0.07 -0.55 0.53 -154.51 -0.08 -0.63 16 3 C 0.13 1.40 4.56 -4.04 -0.02 1.38 16 4 N -0.74 -8.85 4.96 -60.30 -0.30 -9.15 16 5 C 0.51 8.43 7.83 -10.98 -0.09 8.34 16 6 O -0.54 -11.15 15.98 5.55 0.09 -11.06 16 7 C -0.14 -2.35 5.70 -27.88 -0.16 -2.51 16 8 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 14 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C -0.11 -0.82 4.56 -26.73 -0.12 -0.94 16 19 C -0.12 -0.78 5.65 -26.73 -0.15 -0.93 16 20 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 21 C -0.12 -0.73 5.65 -26.73 -0.15 -0.88 16 22 C -0.11 -0.76 4.73 -26.73 -0.13 -0.88 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.41 4.81 -51.93 -0.25 0.16 16 25 H 0.06 0.42 6.86 -51.93 -0.36 0.06 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.40 3.78 6.16 -40.82 -0.25 3.53 16 29 H 0.09 1.34 8.14 -51.92 -0.42 0.92 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.49 6.86 -51.93 -0.36 0.13 16 38 H 0.07 0.41 6.43 -51.93 -0.33 0.07 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.39 6.43 -51.93 -0.33 0.06 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -32.98 345.59 -8.91 -41.89 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -8.18 Total: -2.93 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -1.44 Total: -14.55 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.44 Total: -35.81 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.98 -8.91 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593990347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.295 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds