Wall clock time and date at job start Mon Mar 30 2020 07:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47338 * 2 1 4 4 N 1.46497 * 109.46992 * 60.00083 * 3 2 1 5 5 C 1.34777 * 119.99525 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00463 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99675 * 179.72583 * 5 4 3 8 8 C 1.53004 * 109.47208 * 180.27843 * 7 5 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46940 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00213 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00116 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00201 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.46991 * 59.99818 * 14 12 10 16 16 H 1.48498 * 109.47276 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47240 * 300.00255 * 14 12 10 18 18 C 1.53006 * 109.46977 * 120.00210 * 2 1 3 19 19 C 1.52999 * 109.47258 * 59.99740 * 18 2 1 20 20 C 1.52998 * 109.47306 * 60.00015 * 19 18 2 21 21 C 1.53006 * 109.46950 * 300.00173 * 20 19 18 22 22 C 1.52998 * 109.46903 * 239.99777 * 2 1 3 23 23 H 1.09003 * 109.47465 * 59.99650 * 1 2 3 24 24 H 1.09001 * 109.47749 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46864 * 300.00020 * 1 2 3 26 26 H 1.08995 * 109.46838 * 299.99971 * 3 2 1 27 27 H 1.09001 * 109.46617 * 180.02562 * 3 2 1 28 28 H 0.97000 * 120.00580 * 0.02562 * 4 3 2 29 29 H 1.09009 * 109.47352 * 300.27556 * 7 5 4 30 30 H 1.08998 * 109.47585 * 60.27844 * 7 5 4 31 31 H 1.09000 * 109.46887 * 300.00372 * 8 7 5 32 32 H 1.08998 * 109.46846 * 59.99549 * 8 7 5 33 33 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 34 34 H 1.09001 * 109.47109 * 60.00906 * 9 8 7 35 35 H 0.97000 * 120.00572 * 179.97438 * 13 12 10 36 36 H 1.09007 * 109.46697 * 179.97438 * 18 2 1 37 37 H 1.08998 * 109.46912 * 299.99187 * 18 2 1 38 38 H 1.09001 * 109.47054 * 300.00043 * 19 18 2 39 39 H 1.08995 * 109.46838 * 180.02562 * 19 18 2 40 40 H 1.08994 * 109.47484 * 180.02562 * 20 19 18 41 41 H 1.09007 * 109.47220 * 59.99607 * 20 19 18 42 42 H 1.09001 * 109.47123 * 299.99797 * 21 20 19 43 43 H 1.09003 * 109.47135 * 179.97438 * 21 20 19 44 44 H 1.08995 * 109.47215 * 60.00065 * 22 2 1 45 45 H 1.09001 * 109.47513 * 180.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1330 1.1962 5 6 1.8778 3.4232 1.4096 6 8 2.5751 4.0126 0.6113 7 6 1.3704 4.1355 2.6370 8 6 1.8764 5.5794 2.6345 9 6 1.3607 6.3026 3.8802 10 6 1.8596 7.7247 3.8780 11 1 2.4819 8.0775 3.0688 12 6 1.5217 8.5754 4.9090 13 7 0.7644 8.1458 5.8947 14 14 2.1395 10.3383 4.9060 15 1 1.6455 11.0338 3.6904 16 1 1.6402 11.0400 6.1157 17 1 3.6245 10.3425 4.9095 18 6 2.0399 -0.7213 1.2493 19 6 1.5299 -2.1638 1.2493 20 6 2.0398 -2.8851 0.0001 21 6 1.5298 -2.1638 -1.2492 22 6 2.0399 -0.7213 -1.2492 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6767 1.9562 -0.8900 27 1 3.1300 1.4423 -0.0005 28 1 0.9943 1.6616 1.8349 29 1 0.2804 4.1325 2.6343 30 1 1.7329 3.6251 3.5292 31 1 2.9664 5.5824 2.6371 32 1 1.5139 6.0898 1.7422 33 1 0.2708 6.2997 3.8771 34 1 1.7231 5.7924 4.7726 35 1 0.5270 8.7442 6.6203 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2074 2.1392 38 1 0.4399 -2.1637 1.2493 39 1 1.8928 -2.6774 2.1395 40 1 1.6761 -3.9126 -0.0002 41 1 3.1299 -2.8851 0.0000 42 1 0.4398 -2.1637 -1.2492 43 1 1.8935 -2.6774 -2.1392 44 1 1.6766 -0.2075 -2.1392 45 1 3.1299 -0.7218 -1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593990347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:50 Heat of formation + Delta-G solvation = -108.400025 kcal Electronic energy + Delta-G solvation = -20421.139375 eV Core-core repulsion = 17435.568212 eV Total energy + Delta-G solvation = -2985.571163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19973 -39.97641 -36.24481 -35.81352 -34.04019 -32.85422 -31.64387 -29.88056 -28.04550 -26.97799 -25.34812 -23.60278 -22.37786 -21.78609 -21.17250 -19.28129 -18.62554 -17.86535 -16.93864 -16.85560 -16.50406 -16.08241 -15.70396 -15.36786 -15.10693 -14.86906 -14.52870 -14.22699 -13.87807 -13.81340 -13.60053 -13.28011 -13.04787 -12.93980 -12.59606 -12.50885 -12.47087 -12.41885 -12.32382 -11.89766 -11.88366 -11.55423 -11.46385 -11.27994 -11.07194 -11.03367 -10.86151 -10.69226 -10.54133 -10.05424 -8.20196 -6.30286 1.39345 1.42399 1.50522 1.67738 2.25529 2.42384 3.12586 3.60522 3.71716 3.79322 3.93061 4.16310 4.22995 4.27297 4.32824 4.35512 4.42907 4.52066 4.64569 4.67481 4.73177 4.77345 4.83326 4.91787 4.97610 5.00113 5.09930 5.11568 5.15742 5.19464 5.19965 5.28021 5.30270 5.36421 5.44592 5.47673 5.52823 5.55934 5.67757 5.75725 5.86962 6.27631 6.57404 6.84960 7.29609 7.38307 8.91199 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.050724 B = 0.002761 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.876753 B =10137.100435 C =10385.025745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C 0.129 3.871 4 N -0.715 5.715 5 C 0.514 3.486 6 O -0.587 6.587 7 C -0.131 4.131 8 C -0.082 4.082 9 C 0.027 3.973 10 C -0.549 4.549 11 H 0.051 0.949 12 C 0.003 3.997 13 N -0.929 5.929 14 Si 0.962 3.038 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.269 1.269 18 C -0.110 4.110 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.107 4.107 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.413 0.587 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.001 0.999 34 H 0.001 0.999 35 H 0.265 0.735 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 -25.695 -11.659 28.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.061 4.061 3 C 0.005 3.995 4 N -0.368 5.368 5 C 0.301 3.699 6 O -0.468 6.468 7 C -0.171 4.171 8 C -0.120 4.120 9 C -0.011 4.011 10 C -0.587 4.587 11 H 0.069 0.931 12 C -0.195 4.195 13 N -0.569 5.569 14 Si 0.786 3.214 15 H -0.194 1.194 16 H -0.203 1.203 17 H -0.194 1.194 18 C -0.148 4.148 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.145 4.145 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.251 0.749 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.909 -25.248 -12.073 28.000 hybrid contribution 0.159 1.015 0.444 1.119 sum -0.750 -24.233 -11.629 26.889 Atomic orbital electron populations 1.21995 0.93338 1.02972 1.01974 1.20710 0.96762 0.91704 0.96973 1.21417 0.98362 0.92471 0.87253 1.45961 1.53722 1.11204 1.25943 1.21069 0.79197 0.82149 0.87435 1.90660 1.40003 1.67375 1.48718 1.21683 1.03323 0.96041 0.96016 1.21156 0.99261 0.93480 0.98149 1.19013 0.95191 0.94029 0.92825 1.21674 1.31666 0.98145 1.07247 0.93107 1.25909 0.95237 1.03309 0.95029 1.70056 1.37841 1.37664 1.11389 0.85556 0.78906 0.79150 0.77778 1.19422 1.20282 1.19442 1.21611 1.00431 0.96193 0.96571 1.21567 1.01368 0.94569 0.98104 1.21545 1.00570 0.99140 0.94472 1.21547 1.01303 0.94422 0.98124 1.21522 1.00587 0.96158 0.96242 0.92875 0.90386 0.92438 0.92794 0.92996 0.74879 0.87402 0.87438 0.94204 0.94195 0.98039 0.98056 0.92625 0.92546 0.91721 0.90981 0.91741 0.91325 0.92507 0.91108 0.91476 0.91736 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 7.61 71.98 0.55 -1.28 16 2 C -0.06 -0.87 0.53 -52.18 -0.03 -0.89 16 3 C 0.13 2.72 4.56 86.38 0.39 3.11 16 4 N -0.71 -16.30 4.96 -463.07 -2.30 -18.59 16 5 C 0.51 16.68 7.83 87.66 0.69 17.36 16 6 O -0.59 -24.60 15.98 -3.04 -0.05 -24.64 16 7 C -0.13 -4.33 5.70 29.85 0.17 -4.16 16 8 C -0.08 -3.70 4.44 30.59 0.14 -3.57 16 9 C 0.03 1.43 4.97 29.85 0.15 1.57 16 10 C -0.55 -32.76 9.11 25.60 0.23 -32.53 16 11 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 12 C 0.00 0.19 5.46 84.65 0.46 0.65 16 13 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 14 Si 0.96 45.59 29.54 68.60 2.03 47.61 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 18 C -0.11 -1.47 4.56 30.60 0.14 -1.33 16 19 C -0.12 -1.26 5.65 30.59 0.17 -1.09 16 20 C -0.12 -1.20 5.92 30.60 0.18 -1.02 16 21 C -0.12 -1.19 5.65 30.60 0.17 -1.01 16 22 C -0.11 -1.38 4.73 30.59 0.14 -1.24 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.08 0.79 4.81 -2.39 -0.01 0.77 16 25 H 0.06 0.71 6.86 -2.39 -0.02 0.69 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.41 6.97 6.16 -92.71 -0.57 6.40 16 29 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 30 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 32 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 33 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.06 0.85 6.86 -2.39 -0.02 0.83 16 38 H 0.07 0.69 6.43 -2.39 -0.02 0.67 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 42 H 0.07 0.66 6.43 -2.39 -0.02 0.65 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -71.26 345.59 3.90 -67.36 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.37 Total: 10.27 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 3.56 Total: -25.42 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -2.01 Total: -75.18 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -71.26 3.90 -67.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593990347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.036 kcal (2) G-P(sol) polarization free energy of solvation -71.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds