Wall clock time and date at job start Mon Mar 30 2020 08:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46760 * 2 1 4 4 C 1.52998 * 110.01728 * 304.19718 * 3 2 1 5 5 N 1.46499 * 109.47539 * 304.96226 * 4 3 2 6 6 C 1.34775 * 120.00351 * 174.69688 * 5 4 3 7 7 O 1.21284 * 119.99917 * 0.28047 * 6 5 4 8 8 C 1.50694 * 120.00150 * 180.27437 * 6 5 4 9 9 C 1.52994 * 109.47422 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47331 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.47136 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99960 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00205 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99585 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00076 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47532 * 59.99483 * 15 13 11 17 17 H 1.48507 * 109.47127 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47129 * 299.99139 * 15 13 11 19 19 C 1.54261 * 110.03609 * 65.59210 * 3 2 1 20 20 C 1.54967 * 104.16363 * 95.75126 * 19 3 2 21 21 C 1.54893 * 102.77334 * 37.88852 * 20 19 3 22 22 C 1.53875 * 110.03005 * 182.81096 * 3 2 1 23 23 H 1.09005 * 109.46939 * 175.33455 * 1 2 3 24 24 H 1.08995 * 109.47331 * 295.32765 * 1 2 3 25 25 H 1.08993 * 109.47004 * 55.33430 * 1 2 3 26 26 H 1.08994 * 109.47374 * 240.00124 * 2 1 3 27 27 H 1.08999 * 109.47040 * 119.99667 * 2 1 3 28 28 H 1.08996 * 109.47238 * 184.95841 * 4 3 2 29 29 H 1.09002 * 109.46907 * 64.96185 * 4 3 2 30 30 H 0.97003 * 119.99426 * 354.98289 * 5 4 3 31 31 H 1.09009 * 109.47428 * 300.00648 * 8 6 5 32 32 H 1.09005 * 109.47176 * 60.00199 * 8 6 5 33 33 H 1.09001 * 109.47557 * 300.00427 * 9 8 6 34 34 H 1.09000 * 109.46909 * 60.00094 * 9 8 6 35 35 H 1.08995 * 109.47463 * 300.00029 * 10 9 8 36 36 H 1.09000 * 109.47035 * 60.00187 * 10 9 8 37 37 H 0.97001 * 119.99891 * 180.02562 * 14 13 11 38 38 H 1.09004 * 110.48879 * 214.40491 * 19 3 2 39 39 H 1.09004 * 110.48670 * 337.04389 * 19 3 2 40 40 H 1.08996 * 110.72029 * 279.57856 * 20 19 3 41 41 H 1.08999 * 110.92339 * 156.29712 * 20 19 3 42 42 H 1.09002 * 110.48664 * 203.40235 * 21 20 19 43 43 H 1.08999 * 110.48628 * 80.76003 * 21 20 19 44 44 H 1.08997 * 110.03393 * 359.94765 * 22 3 2 45 45 H 1.09001 * 110.03360 * 121.38409 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4527 2.2056 -1.1890 5 7 1.7565 1.4868 -2.4289 6 6 1.2460 1.9169 -3.5997 7 8 0.5392 2.9021 -3.6276 8 6 1.5535 1.1739 -4.8741 9 6 0.8573 1.8650 -6.0481 10 6 1.1700 1.1109 -7.3421 11 6 0.4837 1.7914 -8.4985 12 1 -0.1153 2.6736 -8.3275 13 6 0.6204 1.2876 -9.7746 14 7 1.3502 0.2135 -9.9828 15 14 -0.2298 2.1314 -11.2079 16 1 0.2586 3.5292 -11.3199 17 1 0.0737 1.3994 -12.4640 18 1 -1.6971 2.1364 -10.9797 19 6 1.6514 2.1404 1.3197 20 6 2.9067 1.9845 2.2149 21 6 4.0699 2.1658 1.2083 22 6 3.5770 1.4582 -0.0709 23 1 -0.3633 -1.0243 -0.0836 24 1 -0.3634 0.4396 0.9288 25 1 -0.3633 0.5845 -0.8452 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8888 3.2036 -1.2314 29 1 0.3721 2.2860 -1.0712 30 1 2.3218 0.6988 -2.4065 31 1 2.6306 1.1703 -5.0419 32 1 1.1953 0.1476 -4.7919 33 1 -0.2198 1.8689 -5.8807 34 1 1.2159 2.8910 -6.1302 35 1 2.2471 1.1075 -7.5095 36 1 0.8118 0.0848 -7.2603 37 1 1.4467 -0.1408 -10.8806 38 1 1.4362 3.1946 1.1449 39 1 0.7935 1.6454 1.7749 40 1 2.9377 0.9929 2.6664 41 1 2.9360 2.7579 2.9824 42 1 4.9761 1.6896 1.5826 43 1 4.2458 3.2240 1.0151 44 1 3.9596 0.4382 -0.1044 45 1 3.9045 2.0095 -0.9523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593992157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:15 Heat of formation + Delta-G solvation = -85.450210 kcal Electronic energy + Delta-G solvation = -20527.444701 eV Core-core repulsion = 17542.868716 eV Total energy + Delta-G solvation = -2984.575984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24538 -38.75810 -34.71447 -34.10065 -32.84556 -31.96592 -29.33639 -28.88550 -27.68690 -25.30653 -23.67163 -23.00711 -20.96566 -20.34381 -19.73199 -18.73771 -16.97835 -16.24726 -16.06982 -15.66906 -15.42931 -15.08495 -14.55566 -14.39929 -13.95071 -13.57923 -13.34376 -13.15521 -12.85829 -12.33168 -12.22482 -11.96805 -11.85351 -11.67391 -11.39884 -11.28812 -11.24697 -10.86337 -10.79535 -10.75521 -10.67764 -10.58725 -10.54706 -10.51680 -9.63400 -9.62631 -9.22235 -8.98519 -8.90442 -8.29118 -5.95065 -3.96341 3.01114 3.38415 3.38459 3.41633 3.45994 4.22471 4.24480 4.34337 4.51628 4.85854 4.88089 4.94206 4.99190 5.15766 5.23650 5.30189 5.36077 5.39235 5.40884 5.43795 5.56332 5.61412 5.68153 5.70728 5.74703 5.78000 5.80347 5.85338 5.87471 5.97527 6.03269 6.11408 6.20491 6.31844 6.58108 6.77411 6.97977 7.20587 7.68583 7.74524 7.87458 8.05968 8.49931 8.54496 9.10629 9.67368 11.16483 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.041557 B = 0.002916 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.611085 B = 9599.391468 C = 9652.053836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C -0.073 4.073 4 C 0.130 3.870 5 N -0.737 5.737 6 C 0.511 3.489 7 O -0.540 6.540 8 C -0.139 4.139 9 C -0.094 4.094 10 C 0.021 3.979 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.121 4.121 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.398 0.602 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -0.892 25.954 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.146 4.146 3 C -0.074 4.074 4 C 0.006 3.994 5 N -0.391 5.391 6 C 0.299 3.701 7 O -0.416 6.416 8 C -0.179 4.179 9 C -0.133 4.133 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.153 4.153 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.158 4.158 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.232 0.768 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.209 -0.282 25.777 26.120 hybrid contribution -0.103 -0.037 -0.825 0.833 sum 4.107 -0.320 24.952 25.289 Atomic orbital electron populations 1.21907 0.95647 1.01834 1.02186 1.21583 0.96239 0.94971 1.01844 1.21486 0.95320 0.95771 0.94782 1.21420 1.00500 0.94934 0.82528 1.46155 1.53584 1.32396 1.06946 1.21235 0.78864 0.84801 0.85209 1.90672 1.37359 1.26700 1.86894 1.21837 1.03007 1.00479 0.92557 1.21433 0.99252 0.99222 0.93350 1.19125 0.96839 0.95337 0.90335 1.21250 1.30224 1.12011 0.92159 0.92640 1.25019 0.95479 0.95077 0.98939 1.69954 1.39927 1.22334 1.21595 0.86651 0.80094 0.79628 0.81601 1.20237 1.21341 1.20231 1.22468 0.98077 1.00648 0.94059 1.22486 0.94707 1.01493 0.97414 1.22345 0.97932 1.00642 0.95242 1.22332 0.93933 1.01062 0.98511 0.92792 0.92661 0.91972 0.91870 0.91776 0.92080 0.91268 0.76769 0.89494 0.89490 0.92757 0.92764 0.96642 0.96642 0.93033 0.91249 0.90986 0.91606 0.91675 0.91807 0.91657 0.91486 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.35 37.16 0.35 -0.97 16 2 C -0.11 -0.82 4.44 -26.73 -0.12 -0.93 16 3 C -0.07 -0.58 0.41 -153.40 -0.06 -0.64 16 4 C 0.13 1.41 3.60 -4.04 -0.01 1.39 16 5 N -0.74 -8.75 4.97 -60.30 -0.30 -9.05 16 6 C 0.51 8.36 7.83 -10.99 -0.09 8.28 16 7 O -0.54 -11.07 15.98 5.55 0.09 -10.98 16 8 C -0.14 -2.35 5.70 -27.89 -0.16 -2.51 16 9 C -0.09 -2.09 4.44 -26.74 -0.12 -2.21 16 10 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 11 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 15 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.11 -0.82 5.74 -25.03 -0.14 -0.96 16 20 C -0.12 -0.78 6.91 -24.69 -0.17 -0.95 16 21 C -0.12 -0.84 6.83 -25.07 -0.17 -1.01 16 22 C -0.12 -0.90 5.71 -25.61 -0.15 -1.04 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.41 6.54 -51.93 -0.34 0.07 16 25 H 0.06 0.63 6.25 -51.93 -0.32 0.31 16 26 H 0.06 0.48 6.86 -51.93 -0.36 0.12 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.84 6.59 -51.93 -0.34 0.49 16 30 H 0.40 3.77 6.98 -40.82 -0.28 3.48 16 31 H 0.09 1.34 8.14 -51.92 -0.42 0.91 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.07 0.52 7.85 -51.93 -0.41 0.12 16 39 H 0.07 0.49 6.17 -51.93 -0.32 0.17 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 45 H 0.07 0.59 7.58 -51.93 -0.39 0.19 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -32.85 349.90 -8.82 -41.67 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -8.20 Total: -2.36 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.39 Total: -15.14 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.44 Total: -35.70 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.85 -8.82 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593992157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.781 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds