Wall clock time and date at job start Mon Mar 30 2020 08:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46760 * 2 1 4 4 C 1.52998 * 110.01728 * 304.19718 * 3 2 1 5 5 N 1.46499 * 109.47539 * 304.96226 * 4 3 2 6 6 C 1.34775 * 120.00351 * 174.69688 * 5 4 3 7 7 O 1.21284 * 119.99917 * 0.28047 * 6 5 4 8 8 C 1.50694 * 120.00150 * 180.27437 * 6 5 4 9 9 C 1.52994 * 109.47422 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47331 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.47136 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99960 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00205 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99585 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00076 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47532 * 59.99483 * 15 13 11 17 17 H 1.48507 * 109.47127 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47129 * 299.99139 * 15 13 11 19 19 C 1.54261 * 110.03609 * 65.59210 * 3 2 1 20 20 C 1.54967 * 104.16363 * 95.75126 * 19 3 2 21 21 C 1.54893 * 102.77334 * 37.88852 * 20 19 3 22 22 C 1.53875 * 110.03005 * 182.81096 * 3 2 1 23 23 H 1.09005 * 109.46939 * 175.33455 * 1 2 3 24 24 H 1.08995 * 109.47331 * 295.32765 * 1 2 3 25 25 H 1.08993 * 109.47004 * 55.33430 * 1 2 3 26 26 H 1.08994 * 109.47374 * 240.00124 * 2 1 3 27 27 H 1.08999 * 109.47040 * 119.99667 * 2 1 3 28 28 H 1.08996 * 109.47238 * 184.95841 * 4 3 2 29 29 H 1.09002 * 109.46907 * 64.96185 * 4 3 2 30 30 H 0.97003 * 119.99426 * 354.98289 * 5 4 3 31 31 H 1.09009 * 109.47428 * 300.00648 * 8 6 5 32 32 H 1.09005 * 109.47176 * 60.00199 * 8 6 5 33 33 H 1.09001 * 109.47557 * 300.00427 * 9 8 6 34 34 H 1.09000 * 109.46909 * 60.00094 * 9 8 6 35 35 H 1.08995 * 109.47463 * 300.00029 * 10 9 8 36 36 H 1.09000 * 109.47035 * 60.00187 * 10 9 8 37 37 H 0.97001 * 119.99891 * 180.02562 * 14 13 11 38 38 H 1.09004 * 110.48879 * 214.40491 * 19 3 2 39 39 H 1.09004 * 110.48670 * 337.04389 * 19 3 2 40 40 H 1.08996 * 110.72029 * 279.57856 * 20 19 3 41 41 H 1.08999 * 110.92339 * 156.29712 * 20 19 3 42 42 H 1.09002 * 110.48664 * 203.40235 * 21 20 19 43 43 H 1.08999 * 110.48628 * 80.76003 * 21 20 19 44 44 H 1.08997 * 110.03393 * 359.94765 * 22 3 2 45 45 H 1.09001 * 110.03360 * 121.38409 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4527 2.2056 -1.1890 5 7 1.7565 1.4868 -2.4289 6 6 1.2460 1.9169 -3.5997 7 8 0.5392 2.9021 -3.6276 8 6 1.5535 1.1739 -4.8741 9 6 0.8573 1.8650 -6.0481 10 6 1.1700 1.1109 -7.3421 11 6 0.4837 1.7914 -8.4985 12 1 -0.1153 2.6736 -8.3275 13 6 0.6204 1.2876 -9.7746 14 7 1.3502 0.2135 -9.9828 15 14 -0.2298 2.1314 -11.2079 16 1 0.2586 3.5292 -11.3199 17 1 0.0737 1.3994 -12.4640 18 1 -1.6971 2.1364 -10.9797 19 6 1.6514 2.1404 1.3197 20 6 2.9067 1.9845 2.2149 21 6 4.0699 2.1658 1.2083 22 6 3.5770 1.4582 -0.0709 23 1 -0.3633 -1.0243 -0.0836 24 1 -0.3634 0.4396 0.9288 25 1 -0.3633 0.5845 -0.8452 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8888 3.2036 -1.2314 29 1 0.3721 2.2860 -1.0712 30 1 2.3218 0.6988 -2.4065 31 1 2.6306 1.1703 -5.0419 32 1 1.1953 0.1476 -4.7919 33 1 -0.2198 1.8689 -5.8807 34 1 1.2159 2.8910 -6.1302 35 1 2.2471 1.1075 -7.5095 36 1 0.8118 0.0848 -7.2603 37 1 1.4467 -0.1408 -10.8806 38 1 1.4362 3.1946 1.1449 39 1 0.7935 1.6454 1.7749 40 1 2.9377 0.9929 2.6664 41 1 2.9360 2.7579 2.9824 42 1 4.9761 1.6896 1.5826 43 1 4.2458 3.2240 1.0151 44 1 3.9596 0.4382 -0.1044 45 1 3.9045 2.0095 -0.9523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593992157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:14 Heat of formation + Delta-G solvation = -104.602064 kcal Electronic energy + Delta-G solvation = -20528.275187 eV Core-core repulsion = 17542.868716 eV Total energy + Delta-G solvation = -2985.406471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19588 -39.82398 -36.17789 -35.57945 -34.04586 -33.57016 -30.42988 -29.57871 -29.10279 -26.50774 -25.20481 -23.81580 -22.27610 -21.44115 -21.01243 -19.50109 -18.57653 -17.83249 -17.08595 -16.80281 -16.52475 -16.45653 -15.97125 -15.44710 -14.91765 -14.75541 -14.39858 -14.22234 -14.02327 -13.78161 -13.53135 -13.32420 -13.01073 -12.63680 -12.57659 -12.50580 -12.45283 -12.35840 -11.93771 -11.79981 -11.55705 -11.46892 -11.45158 -11.37121 -11.33758 -11.27493 -11.21493 -10.71615 -10.54292 -10.03735 -8.20383 -6.30458 1.39188 1.42257 1.50357 1.68554 2.26145 2.42286 3.12426 3.58275 3.61512 3.72395 3.94621 4.20499 4.23520 4.26634 4.31458 4.34780 4.37344 4.56704 4.62675 4.68257 4.76026 4.80698 4.83347 4.88839 4.97106 5.00240 5.09503 5.10961 5.11627 5.16035 5.19073 5.24391 5.30361 5.33014 5.48501 5.49675 5.52100 5.54187 5.58582 5.75498 5.86782 6.27494 6.58722 6.84779 7.30572 7.38142 8.91040 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.041557 B = 0.002916 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.611085 B = 9599.391468 C = 9652.053836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 C -0.064 4.064 4 C 0.131 3.869 5 N -0.713 5.713 6 C 0.514 3.486 7 O -0.587 6.587 8 C -0.131 4.131 9 C -0.082 4.082 10 C 0.027 3.973 11 C -0.550 4.550 12 H 0.051 0.949 13 C 0.003 3.997 14 N -0.929 5.929 15 Si 0.962 3.038 16 H -0.269 1.269 17 H -0.278 1.278 18 H -0.269 1.269 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.120 4.120 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.413 0.587 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.001 0.999 36 H 0.001 0.999 37 H 0.265 0.735 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.186 -1.495 27.085 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C -0.065 4.065 4 C 0.007 3.993 5 N -0.366 5.366 6 C 0.302 3.698 7 O -0.468 6.468 8 C -0.171 4.171 9 C -0.120 4.120 10 C -0.010 4.010 11 C -0.588 4.588 12 H 0.069 0.931 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.786 3.214 16 H -0.194 1.194 17 H -0.203 1.203 18 H -0.194 1.194 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.162 4.162 22 C -0.158 4.158 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.250 0.750 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.754 -0.916 26.947 27.379 hybrid contribution -0.247 0.132 -1.138 1.172 sum 4.508 -0.784 25.809 26.211 Atomic orbital electron populations 1.21891 0.96330 1.01673 1.01606 1.21593 0.95548 0.94538 1.02731 1.21434 0.95655 0.95775 0.93624 1.21502 0.99923 0.94914 0.82953 1.45926 1.52256 1.32345 1.06120 1.21046 0.78562 0.84090 0.86111 1.90660 1.39756 1.28780 1.87577 1.21677 1.03646 1.00813 0.90922 1.21151 0.98840 0.98357 0.93669 1.19009 0.95434 0.94786 0.91798 1.21676 1.30917 1.12403 0.93768 0.93111 1.25909 0.96029 0.95698 1.01828 1.70058 1.40831 1.23485 1.22562 0.85555 0.79108 0.78715 0.78013 1.19445 1.20266 1.19425 1.22481 0.98913 1.00171 0.93795 1.22475 0.93678 1.02262 0.97205 1.22353 0.98548 1.00297 0.95001 1.22332 0.93261 1.01719 0.98480 0.92426 0.91890 0.94240 0.91677 0.90163 0.93204 0.92548 0.74954 0.87476 0.87467 0.94212 0.94232 0.98072 0.98064 0.92623 0.92019 0.90401 0.90678 0.91073 0.90829 0.92294 0.90263 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.35 71.98 0.67 -1.72 16 2 C -0.11 -1.36 4.44 30.59 0.14 -1.22 16 3 C -0.06 -0.91 0.41 -51.46 -0.02 -0.93 16 4 C 0.13 2.77 3.60 86.38 0.31 3.08 16 5 N -0.71 -16.26 4.97 -463.07 -2.30 -18.56 16 6 C 0.51 16.69 7.83 87.66 0.69 17.38 16 7 O -0.59 -24.59 15.98 -3.04 -0.05 -24.64 16 8 C -0.13 -4.34 5.70 29.84 0.17 -4.17 16 9 C -0.08 -3.70 4.44 30.59 0.14 -3.56 16 10 C 0.03 1.44 4.97 29.85 0.15 1.59 16 11 C -0.55 -32.82 9.11 25.60 0.23 -32.59 16 12 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 13 C 0.00 0.20 5.46 84.66 0.46 0.66 16 14 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 15 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 C -0.12 -1.47 5.74 31.69 0.18 -1.28 16 20 C -0.12 -1.22 6.91 31.91 0.22 -1.00 16 21 C -0.12 -1.42 6.83 31.67 0.22 -1.21 16 22 C -0.12 -1.54 5.71 31.32 0.18 -1.36 16 23 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 24 H 0.06 0.84 6.54 -2.39 -0.02 0.83 16 25 H 0.04 0.78 6.25 -2.39 -0.01 0.76 16 26 H 0.06 0.81 6.86 -2.39 -0.02 0.79 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.38 6.59 -2.39 -0.02 1.36 16 30 H 0.41 7.01 6.98 -92.71 -0.65 6.36 16 31 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 32 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 33 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 34 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 35 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.06 0.88 7.85 -2.39 -0.02 0.86 16 39 H 0.08 0.90 6.17 -2.39 -0.01 0.89 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.08 0.84 7.67 -2.39 -0.02 0.83 16 45 H 0.06 0.89 7.58 -2.39 -0.02 0.87 16 Total: -1.00 -71.33 349.90 3.99 -67.34 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.30 Total: 11.16 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 3.73 Total: -26.33 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -2.02 Total: -75.18 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.33 3.99 -67.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593992157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.257 kcal (2) G-P(sol) polarization free energy of solvation -71.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds