Wall clock time and date at job start Mon Mar 30 2020 07:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46896 * 2 1 4 4 C 1.52998 * 109.47124 * 119.99618 * 2 1 3 5 5 C 1.52998 * 109.47165 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47390 * 300.00538 * 5 4 2 7 7 C 1.52995 * 109.47058 * 59.99531 * 6 5 4 8 8 H 1.08997 * 109.47242 * 60.00382 * 7 6 5 9 9 N 1.46497 * 109.47219 * 180.02562 * 7 6 5 10 10 C 1.34779 * 120.00024 * 275.00213 * 9 7 6 11 11 O 1.21281 * 120.00243 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00159 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47471 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47535 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46997 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99717 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.52994 * 109.46809 * 239.99824 * 2 1 3 24 24 H 1.08998 * 109.47032 * 300.00279 * 1 2 3 25 25 H 1.08994 * 109.47073 * 60.00121 * 1 2 3 26 26 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47081 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47293 * 299.99962 * 3 2 1 29 29 H 1.08998 * 109.47508 * 60.00012 * 3 2 1 30 30 H 1.09005 * 109.46893 * 59.99847 * 4 2 1 31 31 H 1.08996 * 109.47199 * 300.00513 * 4 2 1 32 32 H 1.08994 * 109.47115 * 180.02562 * 5 4 2 33 33 H 1.09007 * 109.46832 * 60.00686 * 5 4 2 34 34 H 1.09005 * 109.46739 * 299.99950 * 6 5 4 35 35 H 1.08996 * 109.46852 * 179.97438 * 6 5 4 36 36 H 0.97003 * 120.00300 * 94.99621 * 9 7 6 37 37 H 1.09005 * 109.46912 * 60.00075 * 12 10 9 38 38 H 1.09004 * 109.47536 * 300.00283 * 12 10 9 39 39 H 1.09005 * 109.46889 * 60.00186 * 13 12 10 40 40 H 1.09002 * 109.47401 * 300.00275 * 13 12 10 41 41 H 1.09005 * 109.46767 * 60.00250 * 14 13 12 42 42 H 1.09002 * 109.47113 * 300.00590 * 14 13 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.47080 * 60.00221 * 23 2 1 45 45 H 1.08998 * 109.47657 * 299.99708 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2490 6 6 4.0796 -1.4433 -0.0003 7 6 3.5695 -0.7221 -1.2495 8 1 3.9332 0.3054 -1.2498 9 7 4.0569 -1.4133 -2.4456 10 6 5.2789 -1.1285 -2.9377 11 8 5.9752 -0.3002 -2.3900 12 6 5.7805 -1.8399 -4.1678 13 6 7.1829 -1.3350 -4.5129 14 6 7.6925 -2.0578 -5.7614 15 6 9.0736 -1.5600 -6.1015 16 1 9.5413 -0.8040 -5.4883 17 6 9.7400 -2.0697 -7.1957 18 7 10.9456 -1.6356 -7.4922 19 14 8.9306 -3.3767 -8.2568 20 1 9.2744 -4.7228 -7.7324 21 1 7.4570 -3.1954 -8.2274 22 1 9.4171 -3.2508 -9.6542 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7488 1.2493 31 1 1.6767 -0.2073 2.1392 32 1 3.9333 -1.2359 2.1387 33 1 3.9337 0.3059 1.2488 34 1 3.7158 -2.4709 0.0000 35 1 5.1695 -1.4433 -0.0007 36 1 3.5002 -2.0762 -2.8835 37 1 5.1077 -1.6412 -5.0022 38 1 5.8167 -2.9127 -3.9779 39 1 7.8559 -1.5334 -3.6786 40 1 7.1464 -0.2624 -4.7031 41 1 7.0196 -1.8598 -6.5958 42 1 7.7291 -3.1304 -5.5708 43 1 11.4145 -1.9944 -8.2618 44 1 1.6766 -0.2074 -2.1392 45 1 1.6767 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594009012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:44 Heat of formation + Delta-G solvation = -85.418255 kcal Electronic energy + Delta-G solvation = -20602.874876 eV Core-core repulsion = 17618.300278 eV Total energy + Delta-G solvation = -2984.574599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37625 -38.83297 -34.88188 -34.19544 -32.79980 -32.03923 -30.03882 -28.06135 -27.64675 -26.64689 -23.98568 -22.50327 -21.42585 -20.37524 -19.84089 -18.60913 -16.95152 -16.44326 -16.23771 -15.43974 -15.02914 -14.98890 -14.49792 -14.20065 -13.99847 -13.78083 -13.30281 -13.18861 -12.84521 -12.58512 -12.37474 -12.21473 -11.95733 -11.78250 -11.73320 -11.57166 -11.34276 -11.24165 -10.96047 -10.79280 -10.75901 -10.48417 -10.29746 -9.96523 -9.79782 -9.66928 -9.34279 -9.09812 -8.96360 -8.48918 -5.98665 -3.96202 2.92477 3.26613 3.33091 3.40085 3.43222 4.31278 4.37519 4.48272 4.49021 4.82697 4.83577 5.01641 5.06631 5.14113 5.19337 5.24380 5.34687 5.35286 5.37314 5.39798 5.54258 5.60641 5.62588 5.64600 5.65270 5.75648 5.76688 5.87634 5.95313 5.97602 6.07223 6.09865 6.16802 6.28183 6.57113 6.60041 6.73252 6.95823 7.41016 7.48934 7.62975 7.85304 8.47250 8.61847 9.08350 9.63495 11.15108 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043489 B = 0.003031 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.689672 B = 9234.719060 C = 9424.563586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.149 4.149 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.130 4.130 7 C 0.143 3.857 8 H 0.089 0.911 9 N -0.737 5.737 10 C 0.513 3.487 11 O -0.535 6.535 12 C -0.142 4.142 13 C -0.087 4.087 14 C -0.015 4.015 15 C -0.518 4.518 16 H 0.072 0.928 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.266 1.266 22 H -0.289 1.289 23 C -0.115 4.115 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.015 0.985 42 H 0.010 0.990 43 H 0.262 0.738 44 H 0.068 0.932 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.121 0.053 16.446 29.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.206 4.206 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.168 4.168 7 C 0.038 3.962 8 H 0.107 0.893 9 N -0.390 5.390 10 C 0.300 3.700 11 O -0.411 6.411 12 C -0.182 4.182 13 C -0.125 4.125 14 C -0.052 4.052 15 C -0.556 4.556 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.544 5.544 19 Si 0.709 3.291 20 H -0.204 1.204 21 H -0.190 1.190 22 H -0.215 1.215 23 C -0.153 4.153 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.450 0.650 16.702 28.797 hybrid contribution -0.588 -1.108 -0.867 1.525 sum -24.038 -0.459 15.834 28.788 Atomic orbital electron populations 1.21860 0.94406 1.01713 1.01827 1.20475 0.95260 0.95671 0.94712 1.22022 1.01883 0.95025 1.01707 1.21627 0.95683 1.00308 0.97014 1.21547 0.95345 1.01270 0.97571 1.21927 1.01516 0.99299 0.94091 1.20959 0.93177 0.97639 0.84415 0.89257 1.46216 1.18509 1.44248 1.29990 1.21154 0.80532 0.82467 0.85810 1.90684 1.55855 1.33714 1.60838 1.21871 1.00880 1.00790 0.94668 1.21257 0.91322 1.00494 0.99429 1.19608 0.97077 0.95346 0.93154 1.21176 0.99108 1.23387 1.11954 0.90941 1.25060 0.94711 0.96587 0.97330 1.69927 1.12602 1.43711 1.28188 0.86755 0.80313 0.82314 0.79727 1.20361 1.19042 1.21467 1.21855 0.94339 1.01015 0.98100 0.92574 0.92591 0.92691 0.91717 0.92640 0.92646 0.91973 0.91918 0.91846 0.91398 0.92019 0.91290 0.76948 0.89474 0.89471 0.92151 0.92114 0.96696 0.97132 0.92813 0.91314 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.47 37.16 0.31 -0.54 16 2 C -0.06 -0.43 0.77 -154.51 -0.12 -0.55 16 3 C -0.15 -1.15 7.78 37.16 0.29 -0.86 16 4 C -0.11 -0.76 4.73 -26.73 -0.13 -0.89 16 5 C -0.12 -1.01 5.65 -26.73 -0.15 -1.16 16 6 C -0.13 -1.32 5.49 -26.73 -0.15 -1.47 16 7 C 0.14 1.50 2.18 -67.96 -0.15 1.35 16 8 H 0.09 1.14 5.87 -51.93 -0.30 0.84 16 9 N -0.74 -8.40 5.08 -53.83 -0.27 -8.67 16 10 C 0.51 8.02 7.79 -10.99 -0.09 7.94 16 11 O -0.54 -10.60 15.65 5.56 0.09 -10.51 16 12 C -0.14 -2.24 5.70 -27.89 -0.16 -2.39 16 13 C -0.09 -1.84 4.44 -26.73 -0.12 -1.95 16 14 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 15 C -0.52 -15.32 9.66 -34.44 -0.33 -15.65 16 16 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -28.63 13.96 55.43 0.77 -27.86 16 19 Si 0.88 21.95 27.47 -169.99 -4.67 17.29 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C -0.12 -0.90 4.19 -26.76 -0.11 -1.02 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.61 6.43 -51.93 -0.33 0.27 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 3.38 8.60 -40.82 -0.35 3.03 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 40 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 41 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 42 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -33.53 346.25 -8.32 -41.86 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.35 Total: -1.46 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -1.11 Total: -15.85 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.50 Total: -36.53 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.53 -8.32 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.562 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds