Wall clock time and date at job start Mon Mar 30 2020 07:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46896 * 2 1 4 4 C 1.52998 * 109.47124 * 119.99618 * 2 1 3 5 5 C 1.52998 * 109.47165 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47390 * 300.00538 * 5 4 2 7 7 C 1.52995 * 109.47058 * 59.99531 * 6 5 4 8 8 H 1.08997 * 109.47242 * 60.00382 * 7 6 5 9 9 N 1.46497 * 109.47219 * 180.02562 * 7 6 5 10 10 C 1.34779 * 120.00024 * 275.00213 * 9 7 6 11 11 O 1.21281 * 120.00243 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00159 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47471 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47535 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46997 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99717 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.52994 * 109.46809 * 239.99824 * 2 1 3 24 24 H 1.08998 * 109.47032 * 300.00279 * 1 2 3 25 25 H 1.08994 * 109.47073 * 60.00121 * 1 2 3 26 26 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47081 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47293 * 299.99962 * 3 2 1 29 29 H 1.08998 * 109.47508 * 60.00012 * 3 2 1 30 30 H 1.09005 * 109.46893 * 59.99847 * 4 2 1 31 31 H 1.08996 * 109.47199 * 300.00513 * 4 2 1 32 32 H 1.08994 * 109.47115 * 180.02562 * 5 4 2 33 33 H 1.09007 * 109.46832 * 60.00686 * 5 4 2 34 34 H 1.09005 * 109.46739 * 299.99950 * 6 5 4 35 35 H 1.08996 * 109.46852 * 179.97438 * 6 5 4 36 36 H 0.97003 * 120.00300 * 94.99621 * 9 7 6 37 37 H 1.09005 * 109.46912 * 60.00075 * 12 10 9 38 38 H 1.09004 * 109.47536 * 300.00283 * 12 10 9 39 39 H 1.09005 * 109.46889 * 60.00186 * 13 12 10 40 40 H 1.09002 * 109.47401 * 300.00275 * 13 12 10 41 41 H 1.09005 * 109.46767 * 60.00250 * 14 13 12 42 42 H 1.09002 * 109.47113 * 300.00590 * 14 13 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.47080 * 60.00221 * 23 2 1 45 45 H 1.08998 * 109.47657 * 299.99708 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2490 6 6 4.0796 -1.4433 -0.0003 7 6 3.5695 -0.7221 -1.2495 8 1 3.9332 0.3054 -1.2498 9 7 4.0569 -1.4133 -2.4456 10 6 5.2789 -1.1285 -2.9377 11 8 5.9752 -0.3002 -2.3900 12 6 5.7805 -1.8399 -4.1678 13 6 7.1829 -1.3350 -4.5129 14 6 7.6925 -2.0578 -5.7614 15 6 9.0736 -1.5600 -6.1015 16 1 9.5413 -0.8040 -5.4883 17 6 9.7400 -2.0697 -7.1957 18 7 10.9456 -1.6356 -7.4922 19 14 8.9306 -3.3767 -8.2568 20 1 9.2744 -4.7228 -7.7324 21 1 7.4570 -3.1954 -8.2274 22 1 9.4171 -3.2508 -9.6542 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7488 1.2493 31 1 1.6767 -0.2073 2.1392 32 1 3.9333 -1.2359 2.1387 33 1 3.9337 0.3059 1.2488 34 1 3.7158 -2.4709 0.0000 35 1 5.1695 -1.4433 -0.0007 36 1 3.5002 -2.0762 -2.8835 37 1 5.1077 -1.6412 -5.0022 38 1 5.8167 -2.9127 -3.9779 39 1 7.8559 -1.5334 -3.6786 40 1 7.1464 -0.2624 -4.7031 41 1 7.0196 -1.8598 -6.5958 42 1 7.7291 -3.1304 -5.5708 43 1 11.4145 -1.9944 -8.2618 44 1 1.6766 -0.2074 -2.1392 45 1 1.6767 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594009012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:44 Heat of formation + Delta-G solvation = -106.915618 kcal Electronic energy + Delta-G solvation = -20603.807072 eV Core-core repulsion = 17618.300278 eV Total energy + Delta-G solvation = -2985.506794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29537 -39.85069 -36.23459 -35.68779 -34.15192 -33.49696 -31.14822 -29.62555 -28.21696 -27.25863 -25.71044 -23.38159 -22.50107 -21.71332 -21.26693 -19.34556 -18.88977 -17.81989 -17.21709 -16.72832 -16.28993 -15.80954 -15.67070 -15.19001 -15.15451 -14.86519 -14.71338 -14.34006 -14.13619 -13.83273 -13.51298 -13.22464 -12.94313 -12.77379 -12.70198 -12.49461 -12.44351 -12.33453 -12.09729 -11.87574 -11.78334 -11.72474 -11.50292 -11.48431 -11.32692 -11.14460 -11.00660 -10.75111 -10.65014 -9.99412 -8.27889 -6.33639 1.38451 1.42223 1.54411 1.69810 2.24460 2.39255 3.07150 3.64270 3.74358 3.82509 3.98019 4.12030 4.14956 4.19926 4.26356 4.37386 4.41428 4.47740 4.55051 4.71258 4.76749 4.80091 4.85481 4.92360 4.96235 4.96831 5.04067 5.05591 5.07012 5.12289 5.15266 5.20584 5.24335 5.35753 5.43874 5.49062 5.53951 5.60077 5.60856 5.64504 5.68304 6.30763 6.63173 6.75174 7.30529 7.35044 8.89932 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043489 B = 0.003031 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.689672 B = 9234.719060 C = 9424.563586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.126 4.126 7 C 0.141 3.859 8 H 0.061 0.939 9 N -0.716 5.716 10 C 0.511 3.489 11 O -0.589 6.589 12 C -0.131 4.131 13 C -0.081 4.081 14 C -0.009 4.009 15 C -0.541 4.541 16 H 0.018 0.982 17 C -0.004 4.004 18 N -0.958 5.958 19 Si 0.963 3.037 20 H -0.264 1.264 21 H -0.235 1.235 22 H -0.286 1.286 23 C -0.107 4.107 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.416 0.584 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.266 0.734 44 H 0.070 0.930 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.085 -2.476 16.132 32.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.060 4.060 3 C -0.207 4.207 4 C -0.141 4.141 5 C -0.156 4.156 6 C -0.164 4.164 7 C 0.037 3.963 8 H 0.079 0.921 9 N -0.368 5.368 10 C 0.299 3.701 11 O -0.469 6.469 12 C -0.171 4.171 13 C -0.119 4.119 14 C -0.046 4.046 15 C -0.579 4.579 16 H 0.036 0.964 17 C -0.200 4.200 18 N -0.598 5.598 19 Si 0.785 3.215 20 H -0.189 1.189 21 H -0.158 1.158 22 H -0.212 1.212 23 C -0.145 4.145 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.253 0.747 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -27.477 -1.897 16.408 32.059 hybrid contribution 0.737 -0.213 -0.693 1.034 sum -26.740 -2.110 15.716 31.088 Atomic orbital electron populations 1.21820 0.92968 1.02451 1.02172 1.20486 0.96270 0.94838 0.94398 1.22023 1.00665 0.96000 1.02019 1.21604 0.94030 1.01120 0.97353 1.21534 0.96820 1.00363 0.96881 1.21874 0.99376 1.00354 0.94843 1.21034 0.95204 0.96076 0.84033 0.92084 1.46016 1.17134 1.43843 1.29802 1.21173 0.81366 0.81834 0.85699 1.90679 1.57640 1.36180 1.62392 1.21725 0.97556 1.02095 0.95705 1.21038 0.94590 0.98910 0.97360 1.19544 0.94015 0.96289 0.94745 1.21571 1.01938 1.22651 1.11744 0.96358 1.26222 0.95249 0.99543 0.98984 1.70112 1.14760 1.45754 1.29214 0.85474 0.80609 0.78497 0.76905 1.18868 1.15815 1.21190 1.21824 0.91649 1.02366 0.98669 0.92035 0.92546 0.91722 0.93630 0.92865 0.91822 0.90796 0.90950 0.91208 0.92644 0.90502 0.94731 0.74683 0.86532 0.86515 0.94717 0.94672 0.95089 0.95240 0.92488 0.91095 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.47 71.98 0.61 -0.62 16 2 C -0.06 -0.71 0.77 -52.18 -0.04 -0.75 16 3 C -0.15 -2.21 7.78 71.98 0.56 -1.65 16 4 C -0.10 -1.20 4.73 30.59 0.14 -1.06 16 5 C -0.12 -1.90 5.65 30.59 0.17 -1.73 16 6 C -0.13 -2.50 5.49 30.59 0.17 -2.33 16 7 C 0.14 2.84 2.18 44.98 0.10 2.94 16 8 H 0.06 1.62 5.87 -2.39 -0.01 1.61 16 9 N -0.72 -14.99 5.08 -442.62 -2.25 -17.24 16 10 C 0.51 15.69 7.79 87.66 0.68 16.38 16 11 O -0.59 -24.36 15.65 -3.03 -0.05 -24.41 16 12 C -0.13 -3.83 5.70 29.85 0.17 -3.66 16 13 C -0.08 -3.45 4.44 30.59 0.14 -3.31 16 14 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 15 C -0.54 -33.02 9.66 25.60 0.25 -32.78 16 16 H 0.02 1.25 7.99 -2.91 -0.02 1.23 16 17 C 0.00 -0.25 5.47 84.66 0.46 0.21 16 18 N -0.96 -62.48 13.96 21.45 0.30 -62.18 16 19 Si 0.96 44.28 27.47 68.60 1.88 46.16 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 23 C -0.11 -1.41 4.19 30.58 0.13 -1.28 16 24 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.04 0.85 4.81 -2.39 -0.01 0.83 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.03 6.43 -2.38 -0.02 1.01 16 34 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.42 5.59 8.60 -92.71 -0.80 4.79 16 37 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 39 H 0.03 1.61 8.10 -2.38 -0.02 1.59 16 40 H 0.03 1.63 8.10 -2.39 -0.02 1.62 16 41 H 0.03 1.38 7.20 -2.38 -0.02 1.36 16 42 H 0.03 1.29 7.57 -2.39 -0.02 1.28 16 43 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 44 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -77.81 346.25 3.64 -74.17 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.09 Total: 13.43 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 3.66 Total: -29.93 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -1.95 Total: -79.42 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.41 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -77.81 3.64 -74.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.747 kcal (2) G-P(sol) polarization free energy of solvation -77.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds