Wall clock time and date at job start Mon Mar 30 2020 07:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00229 * 2 1 4 4 O 1.21279 * 120.00031 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99563 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47045 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47313 * 180.02562 * 6 5 3 8 8 C 1.50701 * 109.47430 * 180.02562 * 7 6 5 9 9 H 1.08010 * 119.99609 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00138 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00054 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99710 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47206 * 60.00004 * 12 10 8 14 14 H 1.48502 * 109.46835 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47093 * 299.99956 * 12 10 8 16 16 C 1.46499 * 120.00225 * 180.02562 * 2 1 3 17 17 H 1.09001 * 110.43746 * 179.29471 * 16 2 1 18 18 C 1.54899 * 110.48585 * 56.75360 * 16 2 1 19 19 C 1.54880 * 102.74928 * 203.37940 * 18 16 2 20 20 C 1.54273 * 104.19562 * 37.94441 * 19 18 16 21 21 C 1.52998 * 110.03202 * 95.67515 * 20 19 18 22 22 C 1.53003 * 110.02985 * 217.10167 * 20 19 18 23 23 C 1.54081 * 106.62069 * 336.27453 * 20 19 18 24 24 H 1.09002 * 109.47391 * 89.99442 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99499 * 1 2 3 26 26 H 1.09004 * 109.47041 * 209.99626 * 1 2 3 27 27 H 1.09004 * 109.47017 * 299.99442 * 5 3 2 28 28 H 1.09002 * 109.47507 * 59.99434 * 5 3 2 29 29 H 1.09004 * 109.47016 * 299.99759 * 6 5 3 30 30 H 1.09002 * 109.47172 * 59.99545 * 6 5 3 31 31 H 1.09004 * 109.46874 * 299.99835 * 7 6 5 32 32 H 1.09002 * 109.47382 * 59.99662 * 7 6 5 33 33 H 0.96999 * 119.99910 * 179.97438 * 11 10 8 34 34 H 1.08999 * 110.75217 * 321.69757 * 18 16 2 35 35 H 1.09003 * 110.75119 * 85.06666 * 18 16 2 36 36 H 1.09003 * 110.48791 * 156.62059 * 19 18 16 37 37 H 1.09000 * 110.49086 * 279.26739 * 19 18 16 38 38 H 1.08995 * 109.47573 * 61.45184 * 21 20 19 39 39 H 1.08996 * 109.47398 * 181.45594 * 21 20 19 40 40 H 1.09007 * 109.46933 * 301.45523 * 21 20 19 41 41 H 1.08997 * 109.46961 * 58.55139 * 22 20 19 42 42 H 1.09004 * 109.46850 * 178.54580 * 22 20 19 43 43 H 1.08993 * 109.47240 * 298.54431 * 22 20 19 44 44 H 1.08999 * 110.16301 * 240.87861 * 23 20 19 45 45 H 1.09006 * 110.00423 * 119.38089 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6147 4.9602 0.0023 8 6 2.5939 6.1057 0.0022 9 1 3.6558 5.9083 0.0018 10 6 2.1343 7.4056 0.0027 11 7 0.8413 7.6459 0.0027 12 14 3.3483 8.8254 0.0033 13 1 4.2020 8.7472 -1.2092 14 1 2.6057 10.1114 0.0043 15 1 4.2020 8.7463 1.2158 16 6 2.1975 -1.2687 -0.0006 17 1 3.2723 -1.0876 -0.0131 18 6 1.7797 -2.1354 -1.2145 19 6 2.1332 -3.5695 -0.7484 20 6 1.7638 -3.5824 0.7494 21 6 0.3577 -4.1555 0.9374 22 6 2.7795 -4.4167 1.5325 23 6 1.8074 -2.1180 1.2267 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8901 0.5138 27 1 0.7585 2.5302 -0.8892 28 1 0.7590 2.5298 0.8908 29 1 3.0063 3.5771 0.8911 30 1 3.0063 3.5779 -0.8889 31 1 0.9877 5.0186 -0.8874 32 1 0.9882 5.0173 0.8925 33 1 0.5180 8.5604 0.0034 34 1 0.7104 -2.0436 -1.4048 35 1 2.3554 -1.8639 -2.0994 36 1 1.5413 -4.3047 -1.2937 37 1 3.1980 -3.7619 -0.8803 38 1 0.3328 -5.1833 0.5754 39 1 0.0960 -4.1365 1.9953 40 1 -0.3576 -3.5550 0.3753 41 1 3.7771 -4.0008 1.3915 42 1 2.5247 -4.3984 2.5922 43 1 2.7601 -5.4450 1.1719 44 1 2.5525 -2.0014 2.0137 45 1 0.8262 -1.8159 1.5931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594014215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:08 Heat of formation + Delta-G solvation = -73.307020 kcal Electronic energy + Delta-G solvation = -20685.329023 eV Core-core repulsion = 17701.279607 eV Total energy + Delta-G solvation = -2984.049416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.28206 -38.60824 -35.23388 -34.18504 -32.19376 -31.45089 -28.98472 -27.72392 -27.53292 -26.80386 -24.67757 -23.54509 -21.07902 -19.97597 -19.05569 -18.73427 -16.99666 -16.38850 -15.85378 -15.60831 -15.21452 -14.52198 -14.37891 -14.07223 -13.82715 -13.54873 -13.38700 -13.06942 -12.70506 -12.48170 -12.32245 -12.15365 -12.01189 -11.79569 -11.66998 -11.55808 -11.25758 -11.01395 -10.79727 -10.75786 -10.71015 -10.61780 -10.54942 -10.50802 -9.63093 -9.58662 -9.21818 -8.98601 -8.54410 -8.29349 -5.95276 -3.96573 2.93732 3.09721 3.38341 3.41484 3.45588 4.27949 4.34259 4.50627 4.51578 4.86124 4.99219 5.05050 5.07242 5.12667 5.24024 5.28717 5.32990 5.36913 5.38357 5.40732 5.50838 5.57378 5.64461 5.69730 5.70155 5.73926 5.77320 5.79645 5.86403 5.97130 6.06791 6.13899 6.16470 6.29836 6.65660 6.76800 6.97710 7.19830 7.52401 7.73699 7.87014 8.05645 8.46990 8.50072 9.10326 9.67193 11.16273 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.047533 B = 0.003025 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.917299 B = 9254.072255 C = 9466.259359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.618 5.618 3 C 0.514 3.486 4 O -0.539 6.539 5 C -0.136 4.136 6 C -0.095 4.095 7 C 0.021 3.979 8 C -0.518 4.518 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.898 5.898 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.135 3.865 17 H 0.103 0.897 18 C -0.133 4.133 19 C -0.113 4.113 20 C -0.069 4.069 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.128 4.128 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 -25.534 0.705 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.353 5.353 3 C 0.304 3.696 4 O -0.415 6.415 5 C -0.176 4.176 6 C -0.133 4.133 7 C -0.016 4.016 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 C 0.031 3.969 17 H 0.121 0.879 18 C -0.171 4.171 19 C -0.151 4.151 20 C -0.069 4.069 21 C -0.194 4.194 22 C -0.197 4.197 23 C -0.166 4.166 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.859 -25.364 0.713 25.534 hybrid contribution 0.393 0.799 0.012 0.891 sum -2.465 -24.564 0.725 24.698 Atomic orbital electron populations 1.21759 0.79913 1.03206 1.01814 1.47970 1.06754 1.05692 1.74835 1.21295 0.88274 0.85560 0.74485 1.90652 1.14348 1.87341 1.49148 1.21867 1.00311 0.91954 1.03476 1.21454 0.96781 0.93472 1.01626 1.19120 0.95393 0.90005 0.97061 1.21248 0.93233 0.90984 1.50181 0.92640 1.25015 0.95121 0.98952 0.95400 1.69951 1.12518 1.20140 1.51203 0.86653 0.81201 0.81452 0.78687 1.20227 1.21335 1.20233 1.21896 0.98218 0.82607 0.94161 0.87877 1.22823 1.01683 0.94662 0.97967 1.22436 1.01431 0.96598 0.94653 1.21170 0.95683 0.94757 0.95308 1.21899 0.95541 1.00471 1.01527 1.21925 0.98645 0.99407 0.99736 1.22711 1.02414 0.93536 0.97974 0.92698 0.90452 0.91247 0.89457 0.89452 0.92772 0.92757 0.96641 0.96654 0.93029 0.91051 0.91269 0.91408 0.91291 0.92739 0.92712 0.92595 0.92439 0.92713 0.92764 0.91258 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 8.93 59.85 0.53 1.26 16 2 N -0.62 -7.99 2.86 -172.03 -0.49 -8.48 16 3 C 0.51 8.75 7.67 -10.98 -0.08 8.66 16 4 O -0.54 -11.21 15.34 5.56 0.09 -11.12 16 5 C -0.14 -2.35 4.25 -27.88 -0.12 -2.47 16 6 C -0.10 -2.12 4.44 -26.73 -0.12 -2.24 16 7 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 8 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 9 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 12 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 C 0.13 1.56 3.26 -66.27 -0.22 1.35 16 17 H 0.10 1.45 6.98 -51.93 -0.36 1.09 16 18 C -0.13 -1.25 6.44 -24.74 -0.16 -1.41 16 19 C -0.11 -0.88 5.90 -25.07 -0.15 -1.03 16 20 C -0.07 -0.53 0.94 -153.28 -0.14 -0.67 16 21 C -0.14 -0.91 8.16 37.16 0.30 -0.60 16 22 C -0.14 -1.00 8.15 37.16 0.30 -0.70 16 23 C -0.13 -1.22 5.67 -25.50 -0.14 -1.36 16 24 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 25 H 0.08 0.72 6.44 -51.93 -0.33 0.39 16 26 H 0.07 0.53 6.36 -51.93 -0.33 0.20 16 27 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 28 H 0.09 1.37 7.40 -51.93 -0.38 0.99 16 29 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.07 0.62 7.17 -51.93 -0.37 0.25 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.46 7.84 -51.93 -0.41 0.06 16 37 H 0.07 0.54 7.85 -51.93 -0.41 0.13 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 45 H 0.07 0.66 5.75 -51.93 -0.30 0.36 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -32.92 350.90 -8.27 -41.19 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -8.32 Total: -4.69 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -0.54 Total: -12.78 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.24 Total: -35.11 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.92 -8.27 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594014215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.119 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds