Wall clock time and date at job start Mon Mar 30 2020 07:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 120.00229 * 2 1 4 4 O 1.21279 * 120.00031 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99563 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47045 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47313 * 180.02562 * 6 5 3 8 8 C 1.50701 * 109.47430 * 180.02562 * 7 6 5 9 9 H 1.08010 * 119.99609 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00138 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00054 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99710 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47206 * 60.00004 * 12 10 8 14 14 H 1.48502 * 109.46835 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47093 * 299.99956 * 12 10 8 16 16 C 1.46499 * 120.00225 * 180.02562 * 2 1 3 17 17 H 1.09001 * 110.43746 * 179.29471 * 16 2 1 18 18 C 1.54899 * 110.48585 * 56.75360 * 16 2 1 19 19 C 1.54880 * 102.74928 * 203.37940 * 18 16 2 20 20 C 1.54273 * 104.19562 * 37.94441 * 19 18 16 21 21 C 1.52998 * 110.03202 * 95.67515 * 20 19 18 22 22 C 1.53003 * 110.02985 * 217.10167 * 20 19 18 23 23 C 1.54081 * 106.62069 * 336.27453 * 20 19 18 24 24 H 1.09002 * 109.47391 * 89.99442 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99499 * 1 2 3 26 26 H 1.09004 * 109.47041 * 209.99626 * 1 2 3 27 27 H 1.09004 * 109.47017 * 299.99442 * 5 3 2 28 28 H 1.09002 * 109.47507 * 59.99434 * 5 3 2 29 29 H 1.09004 * 109.47016 * 299.99759 * 6 5 3 30 30 H 1.09002 * 109.47172 * 59.99545 * 6 5 3 31 31 H 1.09004 * 109.46874 * 299.99835 * 7 6 5 32 32 H 1.09002 * 109.47382 * 59.99662 * 7 6 5 33 33 H 0.96999 * 119.99910 * 179.97438 * 11 10 8 34 34 H 1.08999 * 110.75217 * 321.69757 * 18 16 2 35 35 H 1.09003 * 110.75119 * 85.06666 * 18 16 2 36 36 H 1.09003 * 110.48791 * 156.62059 * 19 18 16 37 37 H 1.09000 * 110.49086 * 279.26739 * 19 18 16 38 38 H 1.08995 * 109.47573 * 61.45184 * 21 20 19 39 39 H 1.08996 * 109.47398 * 181.45594 * 21 20 19 40 40 H 1.09007 * 109.46933 * 301.45523 * 21 20 19 41 41 H 1.08997 * 109.46961 * 58.55139 * 22 20 19 42 42 H 1.09004 * 109.46850 * 178.54580 * 22 20 19 43 43 H 1.08993 * 109.47240 * 298.54431 * 22 20 19 44 44 H 1.08999 * 110.16301 * 240.87861 * 23 20 19 45 45 H 1.09006 * 110.00423 * 119.38089 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6147 4.9602 0.0023 8 6 2.5939 6.1057 0.0022 9 1 3.6558 5.9083 0.0018 10 6 2.1343 7.4056 0.0027 11 7 0.8413 7.6459 0.0027 12 14 3.3483 8.8254 0.0033 13 1 4.2020 8.7472 -1.2092 14 1 2.6057 10.1114 0.0043 15 1 4.2020 8.7463 1.2158 16 6 2.1975 -1.2687 -0.0006 17 1 3.2723 -1.0876 -0.0131 18 6 1.7797 -2.1354 -1.2145 19 6 2.1332 -3.5695 -0.7484 20 6 1.7638 -3.5824 0.7494 21 6 0.3577 -4.1555 0.9374 22 6 2.7795 -4.4167 1.5325 23 6 1.8074 -2.1180 1.2267 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8901 0.5138 27 1 0.7585 2.5302 -0.8892 28 1 0.7590 2.5298 0.8908 29 1 3.0063 3.5771 0.8911 30 1 3.0063 3.5779 -0.8889 31 1 0.9877 5.0186 -0.8874 32 1 0.9882 5.0173 0.8925 33 1 0.5180 8.5604 0.0034 34 1 0.7104 -2.0436 -1.4048 35 1 2.3554 -1.8639 -2.0994 36 1 1.5413 -4.3047 -1.2937 37 1 3.1980 -3.7619 -0.8803 38 1 0.3328 -5.1833 0.5754 39 1 0.0960 -4.1365 1.9953 40 1 -0.3576 -3.5550 0.3753 41 1 3.7771 -4.0008 1.3915 42 1 2.5247 -4.3984 2.5922 43 1 2.7601 -5.4450 1.1719 44 1 2.5525 -2.0014 2.0137 45 1 0.8262 -1.8159 1.5931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594014215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:08 Heat of formation + Delta-G solvation = -91.620738 kcal Electronic energy + Delta-G solvation = -20686.123166 eV Core-core repulsion = 17701.279607 eV Total energy + Delta-G solvation = -2984.843558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34111 -39.61834 -36.32769 -36.11598 -34.07638 -32.41152 -30.11116 -29.13998 -28.17303 -27.69753 -26.08259 -24.86077 -22.54872 -21.39246 -19.98602 -19.62462 -18.53276 -18.11647 -17.09690 -16.90308 -16.48368 -16.03303 -15.39315 -15.20626 -14.77246 -14.51006 -14.30840 -14.18496 -13.91051 -13.80531 -13.72085 -13.23405 -13.09899 -12.91370 -12.74490 -12.61664 -12.49895 -12.38303 -12.31724 -12.30710 -11.67862 -11.56976 -11.48739 -11.40731 -11.36085 -11.33039 -11.26028 -10.69584 -10.54733 -9.59872 -8.20766 -6.30917 1.38897 1.41980 1.50111 1.61313 2.02398 2.41304 3.12003 3.53173 3.58989 3.78077 3.84852 4.17749 4.19714 4.24441 4.31401 4.36375 4.42131 4.49217 4.53957 4.61342 4.65292 4.75767 4.85392 4.86478 4.91735 4.95079 5.00873 5.04612 5.08397 5.11304 5.14462 5.17631 5.21465 5.29053 5.41368 5.44206 5.52221 5.56802 5.68930 5.74192 5.85453 6.26179 6.38612 6.83935 7.19303 7.37639 8.90662 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.047533 B = 0.003025 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.917299 B = 9254.072255 C = 9466.259359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.608 5.608 3 C 0.511 3.489 4 O -0.589 6.589 5 C -0.126 4.126 6 C -0.082 4.082 7 C 0.028 3.972 8 C -0.550 4.550 9 H 0.050 0.950 10 C 0.004 3.996 11 N -0.929 5.929 12 Si 0.962 3.038 13 H -0.269 1.269 14 H -0.277 1.277 15 H -0.270 1.270 16 C 0.127 3.873 17 H 0.070 0.930 18 C -0.126 4.126 19 C -0.109 4.109 20 C -0.065 4.065 21 C -0.135 4.135 22 C -0.140 4.140 23 C -0.122 4.122 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.001 0.999 32 H 0.001 0.999 33 H 0.265 0.735 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.537 -26.840 0.654 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.339 5.339 3 C 0.301 3.699 4 O -0.469 6.469 5 C -0.166 4.166 6 C -0.120 4.120 7 C -0.009 4.009 8 C -0.588 4.588 9 H 0.068 0.932 10 C -0.194 4.194 11 N -0.569 5.569 12 Si 0.786 3.214 13 H -0.194 1.194 14 H -0.202 1.202 15 H -0.195 1.195 16 C 0.023 3.977 17 H 0.088 0.912 18 C -0.165 4.165 19 C -0.147 4.147 20 C -0.065 4.065 21 C -0.192 4.192 22 C -0.197 4.197 23 C -0.161 4.161 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.055 -26.713 0.662 27.027 hybrid contribution 0.716 1.168 0.030 1.370 sum -3.340 -25.544 0.693 25.771 Atomic orbital electron populations 1.22074 0.77338 1.04747 1.03364 1.47990 1.08329 1.04902 1.72717 1.21167 0.87607 0.86599 0.74547 1.90634 1.16295 1.88060 1.51930 1.21691 0.99190 0.90358 1.05346 1.21168 0.97070 0.93717 1.00073 1.18995 0.94840 0.91514 0.95526 1.21668 0.93601 0.92595 1.50968 0.93170 1.25899 0.97123 1.01754 0.94612 1.70053 1.14278 1.21101 1.51446 0.85558 0.78845 0.77957 0.79051 1.19450 1.20202 1.19455 1.22019 0.96486 0.82478 0.96670 0.91200 1.22782 1.02287 0.95052 0.96336 1.22433 1.01571 0.95802 0.94857 1.21153 0.96851 0.93426 0.95074 1.21883 0.94383 1.01048 1.01875 1.21922 0.97966 0.99927 0.99898 1.22676 1.02310 0.94535 0.96539 0.91083 0.90030 0.88718 0.87599 0.87492 0.94320 0.94325 0.98039 0.98020 0.92593 0.89565 0.92396 0.89608 0.91732 0.91721 0.92504 0.92081 0.93477 0.92521 0.91558 0.92565 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.93 127.77 1.14 2.22 16 2 N -0.61 -15.12 2.86 -816.56 -2.34 -17.45 16 3 C 0.51 17.51 7.67 87.66 0.67 18.18 16 4 O -0.59 -25.51 15.34 -3.02 -0.05 -25.56 16 5 C -0.13 -4.32 4.25 29.85 0.13 -4.20 16 6 C -0.08 -3.76 4.44 30.59 0.14 -3.62 16 7 C 0.03 1.53 4.97 29.85 0.15 1.68 16 8 C -0.55 -32.97 9.11 25.60 0.23 -32.74 16 9 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 10 C 0.00 0.25 5.46 84.65 0.46 0.71 16 11 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 12 Si 0.96 45.68 29.54 68.60 2.03 47.70 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 16 C 0.13 2.89 3.26 46.07 0.15 3.04 16 17 H 0.07 2.08 6.98 -2.39 -0.02 2.06 16 18 C -0.13 -2.18 6.44 31.89 0.21 -1.97 16 19 C -0.11 -1.47 5.90 31.67 0.19 -1.29 16 20 C -0.06 -0.86 0.94 -51.38 -0.05 -0.90 16 21 C -0.13 -1.34 8.16 71.98 0.59 -0.76 16 22 C -0.14 -1.80 8.15 71.98 0.59 -1.21 16 23 C -0.12 -2.17 5.67 31.39 0.18 -1.99 16 24 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 25 H 0.08 1.30 6.44 -2.39 -0.02 1.29 16 26 H 0.09 1.10 6.36 -2.38 -0.02 1.08 16 27 H 0.11 3.23 8.11 -2.39 -0.02 3.21 16 28 H 0.11 3.24 7.40 -2.39 -0.02 3.22 16 29 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 30 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 31 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.09 1.24 7.17 -2.39 -0.02 1.23 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 0.90 7.84 -2.39 -0.02 0.88 16 37 H 0.06 0.94 7.85 -2.39 -0.02 0.92 16 38 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.06 1.14 7.68 -2.39 -0.02 1.13 16 45 H 0.08 1.29 5.75 -2.38 -0.01 1.28 16 Total: -1.00 -72.50 350.90 5.62 -66.88 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 0.92 Total: 7.84 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 4.77 Total: -22.85 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -2.05 Total: -74.01 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.05 Total: -25.56 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -72.50 5.62 -66.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594014215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.742 kcal (2) G-P(sol) polarization free energy of solvation -72.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds