Wall clock time and date at job start Mon Mar 30 2020 07:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34778 * 120.00074 * 2 1 4 4 O 1.21274 * 119.99823 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.99709 * 0.02562 * 3 2 1 6 6 C 1.52996 * 109.46718 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46929 * 180.02562 * 6 5 3 8 8 C 1.50706 * 109.47348 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99758 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00102 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 300.00068 * 12 10 8 15 15 H 1.48504 * 109.47102 * 60.00417 * 12 10 8 16 16 C 1.46496 * 119.99855 * 180.02562 * 2 1 3 17 17 H 1.09006 * 110.43481 * 182.53710 * 16 2 1 18 18 C 1.54885 * 110.48816 * 305.22333 * 16 2 1 19 19 C 1.54891 * 102.75113 * 156.62234 * 18 16 2 20 20 C 1.54258 * 104.19425 * 322.05923 * 19 18 16 21 21 C 1.53001 * 110.03248 * 264.32363 * 20 19 18 22 22 C 1.53005 * 110.03455 * 142.89464 * 20 19 18 23 23 C 1.53877 * 106.60161 * 23.60831 * 20 19 18 24 24 H 1.09000 * 109.46952 * 89.99909 * 1 2 3 25 25 H 1.08998 * 109.47161 * 209.99840 * 1 2 3 26 26 H 1.08995 * 109.47034 * 329.99819 * 1 2 3 27 27 H 1.09000 * 109.46918 * 59.99955 * 5 3 2 28 28 H 1.09002 * 109.47135 * 299.99692 * 5 3 2 29 29 H 1.09000 * 109.47441 * 60.00302 * 6 5 3 30 30 H 1.09002 * 109.47087 * 299.99748 * 6 5 3 31 31 H 1.09001 * 109.47671 * 60.00109 * 7 6 5 32 32 H 1.09006 * 109.47297 * 299.99829 * 7 6 5 33 33 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 34 34 H 1.09000 * 110.75775 * 274.93839 * 18 16 2 35 35 H 1.09004 * 110.75506 * 38.30440 * 18 16 2 36 36 H 1.09000 * 110.48279 * 203.38145 * 19 18 16 37 37 H 1.08997 * 110.59608 * 80.79117 * 19 18 16 38 38 H 1.09004 * 109.47465 * 177.16458 * 21 20 19 39 39 H 1.09001 * 109.47381 * 297.16518 * 21 20 19 40 40 H 1.09004 * 109.47474 * 57.17034 * 21 20 19 41 41 H 1.09000 * 109.46519 * 302.83224 * 22 20 19 42 42 H 1.09006 * 109.46755 * 62.83181 * 22 20 19 43 43 H 1.09000 * 109.47030 * 182.83262 * 22 20 19 44 44 H 1.08999 * 110.03474 * 240.71540 * 23 20 19 45 45 H 1.08997 * 110.07264 * 119.30619 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6147 4.9602 0.0023 8 6 2.5939 6.1057 0.0035 9 1 3.6558 5.9084 0.0038 10 6 2.1343 7.4056 0.0042 11 7 0.8413 7.6459 0.0044 12 14 3.3483 8.8254 0.0063 13 1 2.6058 10.1114 0.0062 14 1 4.2011 8.7457 1.2194 15 1 4.2029 8.7477 -1.2056 16 6 2.1975 -1.2687 -0.0006 17 1 3.2716 -1.0881 0.0447 18 6 1.7438 -2.1571 1.1843 19 6 2.1115 -3.5827 0.7030 20 6 1.7871 -3.5683 -0.8050 21 6 0.3874 -4.1375 -1.0454 22 6 2.8260 -4.3885 -1.5725 23 6 1.8417 -2.0970 -1.2524 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 0.7591 2.5298 0.8908 28 1 0.7584 2.5303 -0.8892 29 1 3.0063 3.5779 -0.8889 30 1 3.0063 3.5770 0.8911 31 1 0.9883 5.0174 0.8926 32 1 0.9877 5.0186 -0.8874 33 1 0.2110 6.9086 0.0036 34 1 2.2927 -1.9019 2.0908 35 1 0.6693 -2.0685 1.3442 36 1 1.5037 -4.3274 1.2169 37 1 3.1714 -3.7801 0.8633 38 1 0.1478 -4.0767 -2.1071 39 1 0.3589 -5.1792 -0.7257 40 1 -0.3418 -3.5622 -0.4749 41 1 3.8213 -3.9905 -1.3747 42 1 2.7793 -5.4283 -1.2488 43 1 2.6173 -4.3308 -2.6408 44 1 0.8712 -1.7885 -1.6408 45 1 2.6080 -1.9666 -2.0166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594014216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:11 Heat of formation + Delta-G solvation = -76.560613 kcal Electronic energy + Delta-G solvation = -20721.273444 eV Core-core repulsion = 17737.082942 eV Total energy + Delta-G solvation = -2984.190502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33987 -38.66903 -35.30869 -34.45936 -32.29168 -31.45554 -29.00247 -27.67676 -27.40434 -26.79297 -24.63250 -23.37742 -21.26636 -20.19682 -19.08848 -18.78944 -17.18189 -16.63219 -16.01914 -15.64902 -15.29242 -14.54768 -14.15125 -13.91589 -13.67724 -13.56874 -13.44249 -13.20738 -12.93220 -12.78777 -12.42937 -12.33316 -12.01820 -11.75327 -11.64022 -11.43325 -11.36143 -11.06226 -10.82954 -10.81409 -10.73644 -10.68704 -10.61844 -10.07603 -9.78232 -9.77585 -9.42959 -8.60063 -8.47326 -8.26805 -6.30827 -3.98655 2.86535 3.03504 3.48884 3.51140 3.69613 4.24130 4.31150 4.48095 4.60157 4.78928 4.96890 4.99285 5.02735 5.08736 5.15543 5.24224 5.30371 5.32804 5.36475 5.46468 5.47533 5.54493 5.59647 5.62693 5.66994 5.67332 5.68511 5.75817 5.83069 5.94850 6.01714 6.10390 6.13642 6.18680 6.59061 6.62374 6.80448 7.02490 7.43942 7.50991 7.59749 8.29970 8.40007 8.54006 8.95329 9.73016 11.10087 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.047111 B = 0.003039 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.196072 B = 9212.289975 C = 9424.487646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.618 5.618 3 C 0.514 3.486 4 O -0.538 6.538 5 C -0.138 4.138 6 C -0.088 4.088 7 C 0.008 3.992 8 C -0.599 4.599 9 H 0.049 0.951 10 C 0.013 3.987 11 N -0.916 5.916 12 Si 1.069 2.931 13 H -0.283 1.283 14 H -0.288 1.288 15 H -0.288 1.288 16 C 0.135 3.865 17 H 0.104 0.896 18 C -0.135 4.135 19 C -0.113 4.113 20 C -0.069 4.069 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.127 4.127 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.267 0.733 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 -25.927 -0.600 26.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.352 5.352 3 C 0.304 3.696 4 O -0.414 6.414 5 C -0.177 4.177 6 C -0.126 4.126 7 C -0.029 4.029 8 C -0.637 4.637 9 H 0.068 0.932 10 C -0.190 4.190 11 N -0.553 5.553 12 Si 0.897 3.103 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.214 1.214 16 C 0.031 3.969 17 H 0.122 0.878 18 C -0.173 4.173 19 C -0.151 4.151 20 C -0.069 4.069 21 C -0.194 4.194 22 C -0.197 4.197 23 C -0.165 4.165 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.174 -24.248 -0.607 24.353 hybrid contribution -0.297 -1.789 -0.049 1.814 sum -2.471 -26.038 -0.656 26.163 Atomic orbital electron populations 1.21771 0.79915 1.03255 1.01793 1.47959 1.06756 1.05700 1.74783 1.21222 0.88256 0.85516 0.74591 1.90657 1.14305 1.87319 1.49085 1.21876 1.00298 0.92155 1.03397 1.21314 0.96653 0.92778 1.01876 1.19254 0.95916 0.91977 0.95768 1.22088 0.93934 0.92548 1.55177 0.93241 1.25859 0.99205 1.00101 0.93846 1.70792 1.01598 1.35719 1.47166 0.83549 0.74546 0.75621 0.76578 1.20811 1.21433 1.21440 1.21905 0.98195 0.82528 0.94235 0.87840 1.22853 1.01643 0.94708 0.98117 1.22431 1.01547 0.96555 0.94554 1.21132 0.95715 0.94776 0.95298 1.21900 0.95567 1.00447 1.01486 1.21927 0.98471 0.99467 0.99845 1.22651 1.02443 0.93562 0.97864 0.92732 0.91103 0.90522 0.89498 0.89524 0.92576 0.92577 0.97562 0.97555 0.92228 0.91203 0.90894 0.91383 0.91251 0.92706 0.92745 0.92627 0.92439 0.92737 0.92697 0.91064 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 9.17 59.85 0.55 1.26 16 2 N -0.62 -7.95 2.86 -172.04 -0.49 -8.45 16 3 C 0.51 8.76 7.67 -10.98 -0.08 8.67 16 4 O -0.54 -11.21 15.35 5.56 0.09 -11.12 16 5 C -0.14 -2.37 4.25 -27.88 -0.12 -2.49 16 6 C -0.09 -1.98 4.44 -26.73 -0.12 -2.10 16 7 C 0.01 0.21 4.28 -27.88 -0.12 0.09 16 8 C -0.60 -17.88 9.11 -34.44 -0.31 -18.19 16 9 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 10 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 11 N -0.92 -28.67 13.65 55.43 0.76 -27.91 16 12 Si 1.07 26.16 29.90 -169.99 -5.08 21.07 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 C 0.14 1.56 3.27 -66.28 -0.22 1.34 16 17 H 0.10 1.45 6.98 -51.93 -0.36 1.09 16 18 C -0.13 -1.24 6.42 -24.74 -0.16 -1.39 16 19 C -0.11 -0.86 5.90 -25.08 -0.15 -1.01 16 20 C -0.07 -0.53 0.94 -153.39 -0.14 -0.67 16 21 C -0.14 -0.91 8.14 37.16 0.30 -0.60 16 22 C -0.14 -1.00 8.16 37.16 0.30 -0.70 16 23 C -0.13 -1.22 5.74 -25.61 -0.15 -1.36 16 24 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 25 H 0.07 0.53 6.04 -51.93 -0.31 0.22 16 26 H 0.08 0.71 6.44 -51.93 -0.33 0.37 16 27 H 0.09 1.36 7.40 -51.93 -0.38 0.97 16 28 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 29 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 30 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 31 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 32 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 33 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.61 6.06 -51.93 -0.31 0.29 16 36 H 0.07 0.45 7.84 -51.93 -0.41 0.05 16 37 H 0.07 0.53 7.83 -51.93 -0.41 0.13 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.44 8.12 -51.93 -0.42 0.01 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.67 6.52 -51.93 -0.34 0.33 16 45 H 0.07 0.72 7.67 -51.93 -0.40 0.32 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -33.89 349.00 -8.20 -42.10 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -8.22 Total: -4.08 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -0.51 Total: -16.87 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.26 Total: -36.36 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.08 Total: 21.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.89 -8.20 -42.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594014216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.462 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds