Wall clock time and date at job start Mon Mar 30 2020 07:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34778 * 120.00074 * 2 1 4 4 O 1.21274 * 119.99823 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.99709 * 0.02562 * 3 2 1 6 6 C 1.52996 * 109.46718 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46929 * 180.02562 * 6 5 3 8 8 C 1.50706 * 109.47348 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99758 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00102 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 300.00068 * 12 10 8 15 15 H 1.48504 * 109.47102 * 60.00417 * 12 10 8 16 16 C 1.46496 * 119.99855 * 180.02562 * 2 1 3 17 17 H 1.09006 * 110.43481 * 182.53710 * 16 2 1 18 18 C 1.54885 * 110.48816 * 305.22333 * 16 2 1 19 19 C 1.54891 * 102.75113 * 156.62234 * 18 16 2 20 20 C 1.54258 * 104.19425 * 322.05923 * 19 18 16 21 21 C 1.53001 * 110.03248 * 264.32363 * 20 19 18 22 22 C 1.53005 * 110.03455 * 142.89464 * 20 19 18 23 23 C 1.53877 * 106.60161 * 23.60831 * 20 19 18 24 24 H 1.09000 * 109.46952 * 89.99909 * 1 2 3 25 25 H 1.08998 * 109.47161 * 209.99840 * 1 2 3 26 26 H 1.08995 * 109.47034 * 329.99819 * 1 2 3 27 27 H 1.09000 * 109.46918 * 59.99955 * 5 3 2 28 28 H 1.09002 * 109.47135 * 299.99692 * 5 3 2 29 29 H 1.09000 * 109.47441 * 60.00302 * 6 5 3 30 30 H 1.09002 * 109.47087 * 299.99748 * 6 5 3 31 31 H 1.09001 * 109.47671 * 60.00109 * 7 6 5 32 32 H 1.09006 * 109.47297 * 299.99829 * 7 6 5 33 33 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 34 34 H 1.09000 * 110.75775 * 274.93839 * 18 16 2 35 35 H 1.09004 * 110.75506 * 38.30440 * 18 16 2 36 36 H 1.09000 * 110.48279 * 203.38145 * 19 18 16 37 37 H 1.08997 * 110.59608 * 80.79117 * 19 18 16 38 38 H 1.09004 * 109.47465 * 177.16458 * 21 20 19 39 39 H 1.09001 * 109.47381 * 297.16518 * 21 20 19 40 40 H 1.09004 * 109.47474 * 57.17034 * 21 20 19 41 41 H 1.09000 * 109.46519 * 302.83224 * 22 20 19 42 42 H 1.09006 * 109.46755 * 62.83181 * 22 20 19 43 43 H 1.09000 * 109.47030 * 182.83262 * 22 20 19 44 44 H 1.08999 * 110.03474 * 240.71540 * 23 20 19 45 45 H 1.08997 * 110.07264 * 119.30619 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6147 4.9602 0.0023 8 6 2.5939 6.1057 0.0035 9 1 3.6558 5.9084 0.0038 10 6 2.1343 7.4056 0.0042 11 7 0.8413 7.6459 0.0044 12 14 3.3483 8.8254 0.0063 13 1 2.6058 10.1114 0.0062 14 1 4.2011 8.7457 1.2194 15 1 4.2029 8.7477 -1.2056 16 6 2.1975 -1.2687 -0.0006 17 1 3.2716 -1.0881 0.0447 18 6 1.7438 -2.1571 1.1843 19 6 2.1115 -3.5827 0.7030 20 6 1.7871 -3.5683 -0.8050 21 6 0.3874 -4.1375 -1.0454 22 6 2.8260 -4.3885 -1.5725 23 6 1.8417 -2.0970 -1.2524 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 0.7591 2.5298 0.8908 28 1 0.7584 2.5303 -0.8892 29 1 3.0063 3.5779 -0.8889 30 1 3.0063 3.5770 0.8911 31 1 0.9883 5.0174 0.8926 32 1 0.9877 5.0186 -0.8874 33 1 0.2110 6.9086 0.0036 34 1 2.2927 -1.9019 2.0908 35 1 0.6693 -2.0685 1.3442 36 1 1.5037 -4.3274 1.2169 37 1 3.1714 -3.7801 0.8633 38 1 0.1478 -4.0767 -2.1071 39 1 0.3589 -5.1792 -0.7257 40 1 -0.3418 -3.5622 -0.4749 41 1 3.8213 -3.9905 -1.3747 42 1 2.7793 -5.4283 -1.2488 43 1 2.6173 -4.3308 -2.6408 44 1 0.8712 -1.7885 -1.6408 45 1 2.6080 -1.9666 -2.0166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594014216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:10 Heat of formation + Delta-G solvation = -95.822645 kcal Electronic energy + Delta-G solvation = -20722.108709 eV Core-core repulsion = 17737.082942 eV Total energy + Delta-G solvation = -2985.025767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.40221 -39.67479 -36.54653 -36.30474 -34.14045 -32.41202 -30.01238 -29.02851 -28.17455 -27.70977 -25.92610 -24.92291 -22.86159 -21.49565 -20.03355 -19.65557 -19.00771 -18.14936 -17.16201 -16.98760 -16.10701 -15.65909 -15.49600 -15.38215 -15.06425 -14.75543 -14.52976 -14.29044 -13.97525 -13.82100 -13.57276 -13.31310 -13.18146 -12.92131 -12.77059 -12.55626 -12.53384 -12.33444 -12.31374 -11.99963 -11.78973 -11.73324 -11.69502 -11.44235 -11.39188 -11.35514 -10.94054 -10.60613 -10.54939 -9.65000 -8.70608 -6.40179 1.51244 1.54256 1.59651 1.79913 1.96262 2.55594 3.13964 3.47569 3.55920 3.71914 3.81596 4.04964 4.08319 4.20557 4.23285 4.32945 4.39686 4.44114 4.50188 4.53129 4.64587 4.66512 4.78969 4.82407 4.83519 4.88402 4.90894 4.94769 4.96426 5.00412 5.10926 5.12242 5.17789 5.25357 5.39075 5.41280 5.42028 5.49412 5.54702 5.63555 6.00715 6.17326 6.31908 6.58985 7.12641 7.39900 8.71306 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.047111 B = 0.003039 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.196072 B = 9212.289975 C = 9424.487646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.607 5.607 3 C 0.511 3.489 4 O -0.588 6.588 5 C -0.127 4.127 6 C -0.076 4.076 7 C 0.012 3.988 8 C -0.626 4.626 9 H 0.041 0.959 10 C -0.036 4.036 11 N -0.935 5.935 12 Si 1.116 2.884 13 H -0.278 1.278 14 H -0.271 1.271 15 H -0.271 1.271 16 C 0.127 3.873 17 H 0.070 0.930 18 C -0.128 4.128 19 C -0.109 4.109 20 C -0.065 4.065 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.121 4.121 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.037 0.963 30 H 0.038 0.962 31 H -0.001 1.001 32 H -0.002 1.002 33 H 0.258 0.742 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 -27.431 -0.481 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.338 5.338 3 C 0.301 3.699 4 O -0.469 6.469 5 C -0.166 4.166 6 C -0.114 4.114 7 C -0.025 4.025 8 C -0.664 4.664 9 H 0.059 0.941 10 C -0.234 4.234 11 N -0.572 5.572 12 Si 0.937 3.063 13 H -0.203 1.203 14 H -0.196 1.196 15 H -0.197 1.197 16 C 0.023 3.977 17 H 0.088 0.912 18 C -0.166 4.166 19 C -0.146 4.146 20 C -0.065 4.065 21 C -0.191 4.191 22 C -0.197 4.197 23 C -0.160 4.160 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.100 0.900 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.414 -25.814 -0.489 26.044 hybrid contribution 0.042 -1.381 -0.095 1.385 sum -3.372 -27.196 -0.583 27.410 Atomic orbital electron populations 1.22094 0.77296 1.04893 1.03310 1.47983 1.08354 1.04884 1.72618 1.21111 0.87591 0.86581 0.74661 1.90639 1.16295 1.88047 1.51915 1.21695 0.99117 0.90420 1.05386 1.21044 0.96999 0.93239 1.00130 1.19172 0.95390 0.93144 0.94827 1.22532 0.94276 0.94199 1.55420 0.94061 1.27404 1.00120 1.03216 0.92611 1.70917 1.02265 1.35397 1.48640 0.82958 0.72875 0.72572 0.77927 1.20265 1.19629 1.19664 1.22030 0.96476 0.82413 0.96743 0.91191 1.22820 1.02369 0.94913 0.96492 1.22429 1.01732 0.95886 0.94590 1.21116 0.96859 0.93337 0.95206 1.21883 0.94452 1.01083 1.01722 1.21925 0.97811 1.00072 0.99914 1.22612 1.02185 0.94727 0.96435 0.91227 0.88466 0.90008 0.87372 0.87578 0.94381 0.94306 0.98270 0.98327 0.93245 0.92177 0.89240 0.89493 0.91687 0.92649 0.91667 0.92055 0.93466 0.91461 0.92632 0.90305 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 9.17 127.77 1.17 2.22 16 2 N -0.61 -14.96 2.86 -816.59 -2.34 -17.30 16 3 C 0.51 17.46 7.67 87.66 0.67 18.13 16 4 O -0.59 -25.55 15.35 -3.01 -0.05 -25.59 16 5 C -0.13 -4.30 4.25 29.85 0.13 -4.18 16 6 C -0.08 -3.49 4.44 30.59 0.14 -3.36 16 7 C 0.01 0.63 4.28 29.85 0.13 0.76 16 8 C -0.63 -37.99 9.11 25.60 0.23 -37.76 16 9 H 0.04 2.51 7.74 -2.91 -0.02 2.48 16 10 C -0.04 -2.16 5.46 84.65 0.46 -1.70 16 11 N -0.93 -58.82 13.65 21.45 0.29 -58.53 16 12 Si 1.12 52.22 29.90 68.60 2.05 54.27 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 16 C 0.13 2.86 3.27 46.07 0.15 3.01 16 17 H 0.07 2.07 6.98 -2.38 -0.02 2.05 16 18 C -0.13 -2.12 6.42 31.88 0.20 -1.91 16 19 C -0.11 -1.43 5.90 31.67 0.19 -1.24 16 20 C -0.06 -0.86 0.94 -51.46 -0.05 -0.91 16 21 C -0.13 -1.34 8.14 71.98 0.59 -0.76 16 22 C -0.14 -1.81 8.16 71.98 0.59 -1.22 16 23 C -0.12 -2.18 5.74 31.32 0.18 -2.00 16 24 H 0.07 0.96 7.90 -2.39 -0.02 0.94 16 25 H 0.10 1.07 6.04 -2.39 -0.01 1.06 16 26 H 0.08 1.26 6.44 -2.39 -0.02 1.25 16 27 H 0.11 3.22 7.40 -2.39 -0.02 3.20 16 28 H 0.11 3.19 8.11 -2.39 -0.02 3.17 16 29 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 30 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 31 H 0.00 -0.05 8.01 -2.39 -0.02 -0.07 16 32 H 0.00 -0.09 8.01 -2.38 -0.02 -0.10 16 33 H 0.26 16.19 7.22 -92.71 -0.67 15.52 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.19 6.06 -2.38 -0.01 1.18 16 36 H 0.09 0.86 7.84 -2.39 -0.02 0.84 16 37 H 0.06 0.92 7.83 -2.39 -0.02 0.90 16 38 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.05 0.70 8.12 -2.39 -0.02 0.68 16 42 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.08 1.30 6.52 -2.39 -0.02 1.28 16 45 H 0.05 1.13 7.67 -2.39 -0.02 1.11 16 Total: -1.00 -74.93 349.00 5.77 -69.16 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.03 Total: 8.91 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 4.78 Total: -30.92 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -2.04 Total: -75.83 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 2.05 Total: 54.27 kcal Total: -74.93 5.77 -69.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594014216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.663 kcal (2) G-P(sol) polarization free energy of solvation -74.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds