Wall clock time and date at job start Mon Mar 30 2020 07:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 110.05941 * 2 1 4 4 C 1.54270 * 110.02788 * 238.58264 * 2 1 3 5 5 C 1.54894 * 104.19420 * 217.10913 * 4 2 1 6 6 C 1.54888 * 102.75129 * 37.94037 * 5 4 2 7 7 C 1.53876 * 110.03598 * 121.41742 * 2 1 3 8 8 H 1.08995 * 110.03713 * 238.61722 * 7 2 1 9 9 C 1.53005 * 110.02657 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46784 * 184.99918 * 9 7 2 11 11 C 1.34777 * 120.00115 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99593 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99776 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99923 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46794 * 89.99626 * 20 18 16 22 22 H 1.48502 * 109.47140 * 209.99610 * 20 18 16 23 23 H 1.48501 * 109.46982 * 329.99723 * 20 18 16 24 24 H 1.09006 * 109.47017 * 298.58599 * 1 2 3 25 25 H 1.09001 * 109.47420 * 58.58175 * 1 2 3 26 26 H 1.08995 * 109.47334 * 178.58956 * 1 2 3 27 27 H 1.09003 * 109.47186 * 181.42382 * 3 2 1 28 28 H 1.09002 * 109.46691 * 301.41610 * 3 2 1 29 29 H 1.08993 * 109.47478 * 61.41455 * 3 2 1 30 30 H 1.09001 * 110.48859 * 335.78091 * 4 2 1 31 31 H 1.08997 * 110.48824 * 98.42746 * 4 2 1 32 32 H 1.09004 * 110.75853 * 156.25956 * 5 4 2 33 33 H 1.09007 * 110.74967 * 279.44080 * 5 4 2 34 34 H 1.08997 * 110.48405 * 203.38295 * 6 5 4 35 35 H 1.08999 * 110.48442 * 80.73889 * 6 5 4 36 36 H 1.09002 * 109.47193 * 65.00476 * 9 7 2 37 37 H 1.08992 * 109.47333 * 304.99474 * 9 7 2 38 38 H 0.97003 * 120.00244 * 359.97438 * 10 9 7 39 39 H 1.09002 * 109.47120 * 59.99760 * 13 11 10 40 40 H 1.08998 * 109.46862 * 300.00562 * 13 11 10 41 41 H 1.09002 * 109.47153 * 59.99773 * 14 13 11 42 42 H 1.09001 * 109.46832 * 299.99964 * 14 13 11 43 43 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 44 44 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 45 45 H 0.97000 * 119.99684 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0583 -0.7555 -1.2369 5 6 3.3135 -1.5009 -0.7192 6 6 2.8873 -1.9408 0.7035 7 6 2.0571 -0.7536 1.2337 8 1 2.6861 -0.0952 1.8329 9 6 0.8861 -1.2663 2.0744 10 7 1.3981 -1.8764 3.3041 11 6 0.5420 -2.3997 4.2039 12 8 -0.6524 -2.3659 3.9954 13 6 1.0685 -3.0267 5.4690 14 6 -0.1023 -3.5396 6.3097 15 6 0.4323 -4.1756 7.5945 16 6 -0.7210 -4.6802 8.4228 17 1 -1.7340 -4.5597 8.0682 18 6 -0.4830 -5.2966 9.6329 19 7 -1.4895 -5.7366 10.3561 20 14 1.2692 -5.5056 10.2460 21 1 1.6550 -4.3217 11.0550 22 1 1.3578 -6.7282 11.0842 23 1 2.1875 -5.6331 9.0860 24 1 -0.3633 0.4917 0.9024 25 1 -0.3634 0.5357 -0.8770 26 1 -0.3634 -1.0273 -0.0253 27 1 3.1444 1.4261 -0.0255 28 1 1.6761 1.9621 -0.8771 29 1 1.7175 1.9471 0.9023 30 1 1.3141 -1.4661 -1.5966 31 1 2.3295 -0.0537 -2.0255 32 1 3.5323 -2.3681 -1.3423 33 1 4.1717 -0.8300 -0.6784 34 1 3.7636 -2.1038 1.3308 35 1 2.2770 -2.8427 0.6571 36 1 0.3282 -2.0098 1.5051 37 1 0.2291 -0.4345 2.3279 38 1 2.3534 -1.9038 3.4707 39 1 1.6267 -2.2831 6.0380 40 1 1.7256 -3.8587 5.2159 41 1 -0.6601 -4.2832 5.7405 42 1 -0.7597 -2.7077 6.5628 43 1 1.0899 -5.0073 7.3417 44 1 0.9898 -3.4316 8.1635 45 1 -1.3220 -6.1705 11.2072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594039396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:48 Heat of formation + Delta-G solvation = -80.759140 kcal Electronic energy + Delta-G solvation = -20369.593238 eV Core-core repulsion = 17385.220674 eV Total energy + Delta-G solvation = -2984.372564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.25812 -39.01434 -34.72529 -34.18289 -32.58109 -32.06932 -30.33199 -28.25130 -27.81348 -25.49694 -24.18822 -23.02159 -21.01867 -20.41631 -19.84391 -18.54150 -16.86369 -16.42994 -16.35254 -15.69490 -15.22360 -15.19116 -14.47504 -14.17811 -13.84791 -13.68156 -13.45344 -13.31796 -12.98685 -12.63793 -12.46360 -12.19559 -11.93602 -11.85881 -11.57028 -11.39608 -11.07134 -10.94965 -10.91640 -10.84643 -10.76334 -10.75673 -10.71609 -9.96764 -9.80408 -9.66676 -9.36371 -9.09822 -8.95325 -8.48719 -5.98394 -3.95957 2.93721 3.31048 3.33299 3.40246 3.43399 4.13654 4.21323 4.28191 4.49225 4.82275 4.94165 4.94980 4.97570 5.08442 5.15851 5.17761 5.21939 5.34968 5.35754 5.45863 5.50570 5.55837 5.60497 5.62607 5.64735 5.67851 5.73571 5.77195 5.80479 5.94401 6.02913 6.04963 6.14093 6.16817 6.52898 6.60436 6.73514 6.96145 7.41401 7.49286 7.62326 7.85533 8.47230 8.62131 9.08604 9.63759 11.15387 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040922 B = 0.002923 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.067248 B = 9575.584720 C = 9911.460315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.061 4.061 3 C -0.138 4.138 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.121 4.121 7 C -0.096 4.096 8 H 0.079 0.921 9 C 0.124 3.876 10 N -0.741 5.741 11 C 0.511 3.489 12 O -0.537 6.537 13 C -0.142 4.142 14 C -0.087 4.087 15 C -0.015 4.015 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.397 0.603 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.015 0.985 44 H 0.011 0.989 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.753 12.690 -24.200 30.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.196 4.196 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.159 4.159 7 C -0.115 4.115 8 H 0.097 0.903 9 C 0.000 4.000 10 N -0.394 5.394 11 C 0.298 3.702 12 O -0.413 6.413 13 C -0.182 4.182 14 C -0.125 4.125 15 C -0.052 4.052 16 C -0.556 4.556 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.709 3.291 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.231 0.769 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.811 12.625 -24.182 29.726 hybrid contribution 1.370 -0.143 0.537 1.479 sum 13.181 12.483 -23.645 29.810 Atomic orbital electron populations 1.22070 0.94234 1.02336 1.01955 1.21116 0.95682 0.95215 0.94120 1.21910 1.00791 0.95028 1.01828 1.22504 0.97326 0.98797 0.96695 1.22469 0.97659 0.99819 0.96251 1.22472 0.99406 0.97791 0.96228 1.22114 0.96326 0.97093 0.95994 0.90265 1.21629 0.95752 0.97704 0.84896 1.46180 1.10172 1.61834 1.21206 1.21149 0.86610 0.77381 0.85016 1.90691 1.15919 1.56994 1.77658 1.21863 1.01758 1.01032 0.93518 1.21258 0.94940 1.00391 0.95936 1.19608 0.97178 0.95383 0.93024 1.21178 0.94010 1.37228 1.03203 0.90940 1.25057 0.96907 0.95124 0.96601 1.69926 1.30755 1.40333 1.13420 0.86754 0.85764 0.77625 0.78961 1.20363 1.21470 1.19042 0.92005 0.92733 0.92005 0.92615 0.92615 0.92545 0.91400 0.91639 0.91633 0.91601 0.91586 0.91145 0.91498 0.91379 0.76943 0.89477 0.89472 0.92113 0.92141 0.96685 0.97120 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 7.20 37.16 0.27 -0.88 16 2 C -0.06 -0.42 0.94 -153.39 -0.14 -0.57 16 3 C -0.14 -0.87 8.15 37.16 0.30 -0.57 16 4 C -0.12 -0.75 5.90 -25.07 -0.15 -0.89 16 5 C -0.12 -0.78 6.91 -24.74 -0.17 -0.95 16 6 C -0.12 -0.86 6.08 -25.07 -0.15 -1.01 16 7 C -0.10 -0.73 2.61 -89.50 -0.23 -0.96 16 8 H 0.08 0.58 7.67 -51.93 -0.40 0.18 16 9 C 0.12 1.29 3.78 -4.04 -0.02 1.27 16 10 N -0.74 -8.45 5.40 -60.29 -0.33 -8.77 16 11 C 0.51 8.08 7.83 -10.99 -0.09 7.99 16 12 O -0.54 -10.81 15.98 5.55 0.09 -10.73 16 13 C -0.14 -2.24 5.70 -27.89 -0.16 -2.40 16 14 C -0.09 -1.85 4.44 -26.73 -0.12 -1.97 16 15 C -0.01 -0.35 4.04 -27.88 -0.11 -0.47 16 16 C -0.52 -15.33 9.66 -34.44 -0.33 -15.67 16 17 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 20 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 24 H 0.06 0.52 6.62 -51.93 -0.34 0.18 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.52 6.85 -51.93 -0.36 0.16 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.46 7.84 -51.93 -0.41 0.05 16 31 H 0.06 0.38 7.84 -51.93 -0.41 -0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.57 7.76 -51.93 -0.40 0.17 16 36 H 0.07 0.78 6.91 -51.93 -0.36 0.42 16 37 H 0.07 0.79 6.42 -51.93 -0.33 0.45 16 38 H 0.40 3.41 8.36 -40.82 -0.34 3.07 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 42 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 43 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 44 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 45 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -33.77 349.09 -8.42 -42.19 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -8.35 Total: -2.10 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -1.20 Total: -15.26 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.45 Total: -36.65 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.77 -8.42 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594039396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.569 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds