Wall clock time and date at job start Mon Mar 30 2020 07:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 110.05941 * 2 1 4 4 C 1.54270 * 110.02788 * 238.58264 * 2 1 3 5 5 C 1.54894 * 104.19420 * 217.10913 * 4 2 1 6 6 C 1.54888 * 102.75129 * 37.94037 * 5 4 2 7 7 C 1.53876 * 110.03598 * 121.41742 * 2 1 3 8 8 H 1.08995 * 110.03713 * 238.61722 * 7 2 1 9 9 C 1.53005 * 110.02657 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46784 * 184.99918 * 9 7 2 11 11 C 1.34777 * 120.00115 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99593 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99776 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99923 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46794 * 89.99626 * 20 18 16 22 22 H 1.48502 * 109.47140 * 209.99610 * 20 18 16 23 23 H 1.48501 * 109.46982 * 329.99723 * 20 18 16 24 24 H 1.09006 * 109.47017 * 298.58599 * 1 2 3 25 25 H 1.09001 * 109.47420 * 58.58175 * 1 2 3 26 26 H 1.08995 * 109.47334 * 178.58956 * 1 2 3 27 27 H 1.09003 * 109.47186 * 181.42382 * 3 2 1 28 28 H 1.09002 * 109.46691 * 301.41610 * 3 2 1 29 29 H 1.08993 * 109.47478 * 61.41455 * 3 2 1 30 30 H 1.09001 * 110.48859 * 335.78091 * 4 2 1 31 31 H 1.08997 * 110.48824 * 98.42746 * 4 2 1 32 32 H 1.09004 * 110.75853 * 156.25956 * 5 4 2 33 33 H 1.09007 * 110.74967 * 279.44080 * 5 4 2 34 34 H 1.08997 * 110.48405 * 203.38295 * 6 5 4 35 35 H 1.08999 * 110.48442 * 80.73889 * 6 5 4 36 36 H 1.09002 * 109.47193 * 65.00476 * 9 7 2 37 37 H 1.08992 * 109.47333 * 304.99474 * 9 7 2 38 38 H 0.97003 * 120.00244 * 359.97438 * 10 9 7 39 39 H 1.09002 * 109.47120 * 59.99760 * 13 11 10 40 40 H 1.08998 * 109.46862 * 300.00562 * 13 11 10 41 41 H 1.09002 * 109.47153 * 59.99773 * 14 13 11 42 42 H 1.09001 * 109.46832 * 299.99964 * 14 13 11 43 43 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 44 44 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 45 45 H 0.97000 * 119.99684 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0583 -0.7555 -1.2369 5 6 3.3135 -1.5009 -0.7192 6 6 2.8873 -1.9408 0.7035 7 6 2.0571 -0.7536 1.2337 8 1 2.6861 -0.0952 1.8329 9 6 0.8861 -1.2663 2.0744 10 7 1.3981 -1.8764 3.3041 11 6 0.5420 -2.3997 4.2039 12 8 -0.6524 -2.3659 3.9954 13 6 1.0685 -3.0267 5.4690 14 6 -0.1023 -3.5396 6.3097 15 6 0.4323 -4.1756 7.5945 16 6 -0.7210 -4.6802 8.4228 17 1 -1.7340 -4.5597 8.0682 18 6 -0.4830 -5.2966 9.6329 19 7 -1.4895 -5.7366 10.3561 20 14 1.2692 -5.5056 10.2460 21 1 1.6550 -4.3217 11.0550 22 1 1.3578 -6.7282 11.0842 23 1 2.1875 -5.6331 9.0860 24 1 -0.3633 0.4917 0.9024 25 1 -0.3634 0.5357 -0.8770 26 1 -0.3634 -1.0273 -0.0253 27 1 3.1444 1.4261 -0.0255 28 1 1.6761 1.9621 -0.8771 29 1 1.7175 1.9471 0.9023 30 1 1.3141 -1.4661 -1.5966 31 1 2.3295 -0.0537 -2.0255 32 1 3.5323 -2.3681 -1.3423 33 1 4.1717 -0.8300 -0.6784 34 1 3.7636 -2.1038 1.3308 35 1 2.2770 -2.8427 0.6571 36 1 0.3282 -2.0098 1.5051 37 1 0.2291 -0.4345 2.3279 38 1 2.3534 -1.9038 3.4707 39 1 1.6267 -2.2831 6.0380 40 1 1.7256 -3.8587 5.2159 41 1 -0.6601 -4.2832 5.7405 42 1 -0.7597 -2.7077 6.5628 43 1 1.0899 -5.0073 7.3417 44 1 0.9898 -3.4316 8.1635 45 1 -1.3220 -6.1705 11.2072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594039396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:48 Heat of formation + Delta-G solvation = -102.335641 kcal Electronic energy + Delta-G solvation = -20370.528865 eV Core-core repulsion = 17385.220674 eV Total energy + Delta-G solvation = -2985.308192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11494 -40.03616 -36.21467 -35.61206 -34.12539 -33.11983 -31.36186 -29.82379 -28.37394 -26.45003 -25.37784 -24.14987 -22.17303 -21.46381 -21.25336 -19.30784 -18.83562 -17.71732 -17.27015 -16.84789 -16.28389 -16.07539 -15.85661 -15.41374 -14.86248 -14.80721 -14.60621 -14.35207 -13.99737 -13.84561 -13.76480 -13.31186 -13.13339 -12.77042 -12.69315 -12.47664 -12.42690 -11.89857 -11.79081 -11.75381 -11.70574 -11.49078 -11.46683 -11.41664 -11.35950 -11.32109 -11.30105 -10.74664 -10.73889 -10.02117 -8.27358 -6.33106 1.38933 1.42713 1.54892 1.69399 2.27077 2.39739 3.07726 3.55102 3.62853 3.67896 3.95164 4.17736 4.23584 4.25952 4.33113 4.39826 4.45439 4.52277 4.53939 4.56398 4.76545 4.81897 4.88032 4.91607 4.93088 4.96928 4.99130 5.04689 5.05804 5.10464 5.12955 5.23200 5.26417 5.37059 5.43821 5.49674 5.53490 5.56914 5.60394 5.61095 5.68776 6.31331 6.61166 6.75739 7.30937 7.33314 8.90459 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040922 B = 0.002923 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.067248 B = 9575.584720 C = 9911.460315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 C -0.136 4.136 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.121 4.121 7 C -0.088 4.088 8 H 0.091 0.909 9 C 0.125 3.875 10 N -0.717 5.717 11 C 0.509 3.491 12 O -0.591 6.591 13 C -0.131 4.131 14 C -0.081 4.081 15 C -0.009 4.009 16 C -0.541 4.541 17 H 0.018 0.982 18 C -0.004 4.004 19 N -0.958 5.958 20 Si 0.963 3.037 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.235 1.235 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.416 0.584 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.034 0.966 42 H 0.035 0.965 43 H 0.031 0.969 44 H 0.030 0.970 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.072 13.503 -25.075 33.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.193 4.193 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.159 4.159 7 C -0.107 4.107 8 H 0.109 0.891 9 C 0.002 3.998 10 N -0.370 5.370 11 C 0.298 3.702 12 O -0.472 6.472 13 C -0.170 4.170 14 C -0.120 4.120 15 C -0.046 4.046 16 C -0.579 4.579 17 H 0.037 0.963 18 C -0.200 4.200 19 N -0.599 5.599 20 Si 0.785 3.215 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.158 1.158 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.253 0.747 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.180 13.462 -25.098 32.756 hybrid contribution -0.124 -0.385 0.765 0.865 sum 16.056 13.078 -24.334 31.953 Atomic orbital electron populations 1.22059 0.95235 1.01509 1.01794 1.21131 0.94852 0.95926 0.94185 1.21889 1.01342 0.94196 1.01881 1.22501 0.97358 0.98826 0.96602 1.22464 0.97699 1.00103 0.95565 1.22474 0.99478 0.96801 0.97143 1.22083 0.95201 0.97569 0.95818 0.89069 1.21667 0.96880 0.96749 0.84525 1.45962 1.10694 1.59951 1.20412 1.21186 0.86137 0.77290 0.85633 1.90683 1.18286 1.59393 1.78815 1.21719 0.99645 1.02800 0.92878 1.21043 0.96628 0.98774 0.95514 1.19546 0.95361 0.96244 0.93459 1.21574 0.93691 1.38049 1.04580 0.96348 1.26221 1.02911 0.94322 0.96556 1.70111 1.34094 1.41485 1.14170 0.85473 0.78816 0.77964 0.79228 1.18870 1.21218 1.15793 0.93063 0.91950 0.93229 0.91655 0.92127 0.92993 0.92142 0.90687 0.91294 0.90537 0.90240 0.92514 0.93028 0.92661 0.74736 0.86434 0.86513 0.94666 0.94654 0.95075 0.95203 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 7.20 71.98 0.52 -1.76 16 2 C -0.06 -0.75 0.94 -51.46 -0.05 -0.80 16 3 C -0.14 -1.41 8.15 71.98 0.59 -0.83 16 4 C -0.12 -1.27 5.90 31.67 0.19 -1.08 16 5 C -0.12 -1.19 6.91 31.89 0.22 -0.97 16 6 C -0.12 -1.41 6.08 31.67 0.19 -1.22 16 7 C -0.09 -1.16 2.61 -10.07 -0.03 -1.18 16 8 H 0.09 1.03 7.67 -2.39 -0.02 1.01 16 9 C 0.13 2.52 3.78 86.38 0.33 2.84 16 10 N -0.72 -14.96 5.40 -463.05 -2.50 -17.46 16 11 C 0.51 15.61 7.83 87.66 0.69 16.29 16 12 O -0.59 -24.51 15.98 -3.05 -0.05 -24.56 16 13 C -0.13 -3.80 5.70 29.85 0.17 -3.62 16 14 C -0.08 -3.46 4.44 30.59 0.14 -3.32 16 15 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 16 C -0.54 -32.95 9.66 25.60 0.25 -32.70 16 17 H 0.02 1.26 7.99 -2.91 -0.02 1.23 16 18 C 0.00 -0.26 5.47 84.65 0.46 0.20 16 19 N -0.96 -62.42 13.96 21.45 0.30 -62.12 16 20 Si 0.96 44.18 27.47 68.60 1.88 46.06 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 24 H 0.05 0.88 6.62 -2.38 -0.02 0.86 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.86 6.85 -2.39 -0.02 0.85 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.76 7.84 -2.39 -0.02 0.74 16 31 H 0.07 0.70 7.84 -2.39 -0.02 0.68 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.83 7.76 -2.39 -0.02 0.81 16 36 H 0.05 1.22 6.91 -2.39 -0.02 1.21 16 37 H 0.06 1.28 6.42 -2.39 -0.02 1.27 16 38 H 0.42 5.66 8.36 -92.71 -0.77 4.88 16 39 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.03 1.63 8.10 -2.39 -0.02 1.61 16 42 H 0.03 1.64 8.10 -2.39 -0.02 1.62 16 43 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 44 H 0.03 1.30 7.57 -2.39 -0.02 1.29 16 45 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -77.39 349.09 3.52 -73.87 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.11 Total: 12.66 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 3.78 Total: -28.45 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -2.20 Total: -79.58 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -77.39 3.52 -73.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594039396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.469 kcal (2) G-P(sol) polarization free energy of solvation -77.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds