Wall clock time and date at job start Mon Mar 30 2020 08:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46884 * 2 1 4 4 N 1.46495 * 109.47369 * 305.32666 * 3 2 1 5 5 C 1.34783 * 119.99811 * 303.31745 * 4 3 2 6 6 O 1.21280 * 119.99681 * 354.81877 * 5 4 3 7 7 C 1.50699 * 119.99769 * 174.82141 * 5 4 3 8 8 C 1.53000 * 109.46870 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47229 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.47182 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99800 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00235 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99885 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47004 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47060 * 120.00582 * 14 12 10 17 17 H 1.48496 * 109.47194 * 240.00397 * 14 12 10 18 18 C 1.53002 * 109.47093 * 65.32483 * 3 2 1 19 19 C 1.52997 * 109.47409 * 180.02562 * 18 3 2 20 20 C 1.53000 * 109.46972 * 300.00011 * 19 18 3 21 21 C 1.53008 * 109.47214 * 60.00046 * 20 19 18 22 22 C 1.53000 * 109.47134 * 185.32400 * 3 2 1 23 23 H 1.09001 * 109.47492 * 294.86660 * 1 2 3 24 24 H 1.08996 * 109.47629 * 54.86894 * 1 2 3 25 25 H 1.09004 * 109.46736 * 174.86986 * 1 2 3 26 26 H 1.09001 * 109.47347 * 240.00091 * 2 1 3 27 27 H 1.09002 * 109.47412 * 119.99735 * 2 1 3 28 28 H 0.97002 * 120.00541 * 123.58978 * 4 3 2 29 29 H 1.08992 * 109.47222 * 299.99914 * 7 5 4 30 30 H 1.09001 * 109.46985 * 60.00105 * 7 5 4 31 31 H 1.09000 * 109.47345 * 300.00514 * 8 7 5 32 32 H 1.09003 * 109.46919 * 59.99901 * 8 7 5 33 33 H 1.09000 * 109.46604 * 299.99826 * 9 8 7 34 34 H 1.08996 * 109.46702 * 59.99919 * 9 8 7 35 35 H 0.97001 * 119.99961 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47207 * 300.00030 * 18 3 2 37 37 H 1.09004 * 109.46692 * 60.00034 * 18 3 2 38 38 H 1.08995 * 109.47414 * 180.02562 * 19 18 3 39 39 H 1.08996 * 109.47263 * 60.00020 * 19 18 3 40 40 H 1.09004 * 109.47483 * 299.99601 * 20 19 18 41 41 H 1.09002 * 109.47455 * 179.97438 * 20 19 18 42 42 H 1.09001 * 109.46898 * 179.97438 * 21 20 19 43 43 H 1.08996 * 109.47036 * 59.99982 * 21 20 19 44 44 H 1.08996 * 109.47190 * 299.99822 * 22 3 2 45 45 H 1.09001 * 109.47119 * 60.00531 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4497 2.1692 -1.1268 5 6 1.6105 1.7095 -2.3836 6 8 2.3210 0.7487 -2.5915 7 6 0.9076 2.3893 -3.5303 8 6 1.2575 1.6759 -4.8378 9 6 0.5444 2.3664 -6.0021 10 6 0.8885 1.6634 -7.2899 11 1 1.5493 0.8093 -7.2789 12 6 0.3588 2.1101 -8.4819 13 7 -0.4463 3.1499 -8.4952 14 14 0.7859 1.2390 -10.0783 15 1 1.7044 0.1073 -9.7943 16 1 -0.4559 0.7222 -10.7078 17 1 1.4481 2.1948 -11.0019 18 6 1.6421 2.1241 1.3108 19 6 2.1514 3.5668 1.3106 20 6 3.6756 3.5695 1.1765 21 6 4.0734 2.8880 -0.1344 22 6 3.5640 1.4447 -0.1338 23 1 -0.3634 0.4321 0.9324 24 1 -0.3634 0.5913 -0.8404 25 1 -0.3633 -1.0236 -0.0919 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.9465 2.9833 -0.9689 29 1 -0.1698 2.3491 -3.3711 30 1 1.2280 3.4296 -3.5874 31 1 2.3351 1.7164 -4.9967 32 1 0.9375 0.6355 -4.7809 33 1 -0.5332 2.3262 -5.8433 34 1 0.8648 3.4067 -6.0587 35 1 -0.8192 3.4638 -9.3338 36 1 0.5563 2.1226 1.4062 37 1 2.0813 1.5834 2.1492 38 1 1.8685 4.0522 2.2446 39 1 1.7120 4.1072 0.4722 40 1 4.1151 3.0292 2.0149 41 1 4.0385 4.5973 1.1759 42 1 5.1592 2.8903 -0.2302 43 1 3.6339 3.4284 -0.9728 44 1 4.0032 0.9041 0.7046 45 1 3.8474 0.9592 -1.0677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594039905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:06:02 Heat of formation + Delta-G solvation = -83.336520 kcal Electronic energy + Delta-G solvation = -21311.488843 eV Core-core repulsion = 18327.004515 eV Total energy + Delta-G solvation = -2984.484328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.64941 -37.95904 -34.49937 -34.05246 -32.46692 -31.76191 -30.95778 -29.03980 -27.57065 -24.09956 -23.79252 -22.72881 -21.16770 -20.58385 -19.71618 -18.97180 -17.03009 -16.08434 -15.85898 -15.38595 -15.25893 -14.42538 -14.36107 -14.09267 -14.01659 -13.44188 -13.41195 -12.93293 -12.68529 -12.39426 -12.25523 -12.22401 -11.72883 -11.65661 -11.36747 -11.34914 -11.25770 -10.97724 -10.79315 -10.73048 -10.55566 -10.49408 -10.23833 -10.21793 -9.63507 -9.42964 -9.15398 -8.91448 -8.79069 -8.30032 -5.95531 -3.96664 3.03724 3.35096 3.39758 3.42485 3.48483 4.46032 4.51347 4.55105 4.59516 4.94266 4.97844 5.10602 5.21879 5.28910 5.32241 5.34966 5.40666 5.48620 5.52747 5.59090 5.62803 5.76290 5.77313 5.84086 5.85504 5.92695 5.94324 6.05179 6.12953 6.20030 6.25555 6.32520 6.33808 6.38974 6.76583 6.77967 6.98361 7.20872 7.73353 7.78447 7.87284 8.05711 8.49838 8.60624 9.10826 9.67283 11.16036 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030805 B = 0.003660 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.726938 B = 7648.311931 C = 7867.487204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.183 3.817 4 N -0.728 5.728 5 C 0.516 3.484 6 O -0.533 6.533 7 C -0.141 4.141 8 C -0.093 4.093 9 C 0.020 3.980 10 C -0.516 4.516 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.130 4.130 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.396 0.604 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 0.525 23.285 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.097 3.903 4 N -0.382 5.382 5 C 0.304 3.696 6 O -0.409 6.409 7 C -0.180 4.180 8 C -0.131 4.131 9 C -0.017 4.017 10 C -0.554 4.554 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.159 4.159 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.169 4.169 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.230 0.770 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.347 -0.088 23.014 23.421 hybrid contribution -0.137 0.079 -0.807 0.822 sum 4.210 -0.009 22.207 22.602 Atomic orbital electron populations 1.21734 0.95767 1.01503 1.01487 1.21926 0.96246 0.95953 1.03321 1.20236 0.92860 0.91655 0.85558 1.46242 1.56824 1.29063 1.06043 1.21111 0.80835 0.84054 0.83628 1.90601 1.38136 1.27807 1.84388 1.21851 1.00759 1.00974 0.94466 1.21413 1.00843 0.99034 0.91799 1.19138 0.95405 0.95644 0.91551 1.21317 1.28129 1.14101 0.91890 0.92551 1.25020 0.95211 0.95131 0.99170 1.69974 1.32413 1.24967 1.26431 0.86550 0.78203 0.79719 0.83653 1.19681 1.21060 1.21053 1.21853 1.01315 0.96109 0.96656 1.21542 0.96139 0.96422 1.01683 1.21545 0.95667 1.00367 0.98033 1.21484 1.00258 0.96134 0.97548 1.21967 0.94380 0.97009 1.03505 0.93176 0.92433 0.93059 0.89523 0.91869 0.76971 0.89618 0.89717 0.92797 0.92790 0.96684 0.96682 0.93160 0.91168 0.90747 0.91953 0.91887 0.92224 0.92253 0.92325 0.91806 0.91924 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.41 37.16 0.35 -1.23 16 2 C -0.14 -1.55 4.62 -26.73 -0.12 -1.68 16 3 C 0.18 1.92 0.35 -131.82 -0.05 1.87 16 4 N -0.73 -8.35 3.12 -47.61 -0.15 -8.50 16 5 C 0.52 7.99 6.83 -10.98 -0.07 7.91 16 6 O -0.53 -10.03 12.28 5.56 0.07 -9.96 16 7 C -0.14 -2.33 5.70 -27.88 -0.16 -2.49 16 8 C -0.09 -2.02 4.44 -26.73 -0.12 -2.14 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 14 Si 0.89 22.18 29.54 -169.99 -5.02 17.15 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 C -0.12 -0.97 4.56 -26.73 -0.12 -1.09 16 19 C -0.12 -0.90 5.75 -26.73 -0.15 -1.05 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.12 16 21 C -0.12 -1.20 5.77 -26.70 -0.15 -1.35 16 22 C -0.13 -1.48 4.57 -26.70 -0.12 -1.60 16 23 H 0.05 0.45 6.83 -51.93 -0.35 0.09 16 24 H 0.06 0.69 6.96 -51.93 -0.36 0.33 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 1.27 6.28 -51.93 -0.33 0.94 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.40 3.70 7.21 -40.82 -0.29 3.41 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 0.53 6.69 -51.93 -0.35 0.18 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.48 6.79 -51.93 -0.35 0.12 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.74 7.60 -51.93 -0.39 0.35 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.26 6.24 -51.93 -0.32 0.93 16 LS Contribution 341.56 15.07 5.15 5.15 Total: -1.00 -31.90 341.56 -8.86 -40.77 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.21 Total: -0.59 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.43 Total: -17.45 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.59 Total: -35.06 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.90 -8.86 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594039905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.571 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds