Wall clock time and date at job start Mon Mar 30 2020 08:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46884 * 2 1 4 4 N 1.46495 * 109.47369 * 305.32666 * 3 2 1 5 5 C 1.34783 * 119.99811 * 303.31745 * 4 3 2 6 6 O 1.21280 * 119.99681 * 354.81877 * 5 4 3 7 7 C 1.50699 * 119.99769 * 174.82141 * 5 4 3 8 8 C 1.53000 * 109.46870 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47229 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.47182 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99800 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00235 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99885 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47004 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47060 * 120.00582 * 14 12 10 17 17 H 1.48496 * 109.47194 * 240.00397 * 14 12 10 18 18 C 1.53002 * 109.47093 * 65.32483 * 3 2 1 19 19 C 1.52997 * 109.47409 * 180.02562 * 18 3 2 20 20 C 1.53000 * 109.46972 * 300.00011 * 19 18 3 21 21 C 1.53008 * 109.47214 * 60.00046 * 20 19 18 22 22 C 1.53000 * 109.47134 * 185.32400 * 3 2 1 23 23 H 1.09001 * 109.47492 * 294.86660 * 1 2 3 24 24 H 1.08996 * 109.47629 * 54.86894 * 1 2 3 25 25 H 1.09004 * 109.46736 * 174.86986 * 1 2 3 26 26 H 1.09001 * 109.47347 * 240.00091 * 2 1 3 27 27 H 1.09002 * 109.47412 * 119.99735 * 2 1 3 28 28 H 0.97002 * 120.00541 * 123.58978 * 4 3 2 29 29 H 1.08992 * 109.47222 * 299.99914 * 7 5 4 30 30 H 1.09001 * 109.46985 * 60.00105 * 7 5 4 31 31 H 1.09000 * 109.47345 * 300.00514 * 8 7 5 32 32 H 1.09003 * 109.46919 * 59.99901 * 8 7 5 33 33 H 1.09000 * 109.46604 * 299.99826 * 9 8 7 34 34 H 1.08996 * 109.46702 * 59.99919 * 9 8 7 35 35 H 0.97001 * 119.99961 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47207 * 300.00030 * 18 3 2 37 37 H 1.09004 * 109.46692 * 60.00034 * 18 3 2 38 38 H 1.08995 * 109.47414 * 180.02562 * 19 18 3 39 39 H 1.08996 * 109.47263 * 60.00020 * 19 18 3 40 40 H 1.09004 * 109.47483 * 299.99601 * 20 19 18 41 41 H 1.09002 * 109.47455 * 179.97438 * 20 19 18 42 42 H 1.09001 * 109.46898 * 179.97438 * 21 20 19 43 43 H 1.08996 * 109.47036 * 59.99982 * 21 20 19 44 44 H 1.08996 * 109.47190 * 299.99822 * 22 3 2 45 45 H 1.09001 * 109.47119 * 60.00531 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4497 2.1692 -1.1268 5 6 1.6105 1.7095 -2.3836 6 8 2.3210 0.7487 -2.5915 7 6 0.9076 2.3893 -3.5303 8 6 1.2575 1.6759 -4.8378 9 6 0.5444 2.3664 -6.0021 10 6 0.8885 1.6634 -7.2899 11 1 1.5493 0.8093 -7.2789 12 6 0.3588 2.1101 -8.4819 13 7 -0.4463 3.1499 -8.4952 14 14 0.7859 1.2390 -10.0783 15 1 1.7044 0.1073 -9.7943 16 1 -0.4559 0.7222 -10.7078 17 1 1.4481 2.1948 -11.0019 18 6 1.6421 2.1241 1.3108 19 6 2.1514 3.5668 1.3106 20 6 3.6756 3.5695 1.1765 21 6 4.0734 2.8880 -0.1344 22 6 3.5640 1.4447 -0.1338 23 1 -0.3634 0.4321 0.9324 24 1 -0.3634 0.5913 -0.8404 25 1 -0.3633 -1.0236 -0.0919 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.9465 2.9833 -0.9689 29 1 -0.1698 2.3491 -3.3711 30 1 1.2280 3.4296 -3.5874 31 1 2.3351 1.7164 -4.9967 32 1 0.9375 0.6355 -4.7809 33 1 -0.5332 2.3262 -5.8433 34 1 0.8648 3.4067 -6.0587 35 1 -0.8192 3.4638 -9.3338 36 1 0.5563 2.1226 1.4062 37 1 2.0813 1.5834 2.1492 38 1 1.8685 4.0522 2.2446 39 1 1.7120 4.1072 0.4722 40 1 4.1151 3.0292 2.0149 41 1 4.0385 4.5973 1.1759 42 1 5.1592 2.8903 -0.2302 43 1 3.6339 3.4284 -0.9728 44 1 4.0032 0.9041 0.7046 45 1 3.8474 0.9592 -1.0677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594039905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:06:01 Heat of formation + Delta-G solvation = -101.199429 kcal Electronic energy + Delta-G solvation = -21312.263437 eV Core-core repulsion = 18327.004515 eV Total energy + Delta-G solvation = -2985.258922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66389 -39.06124 -36.12135 -35.25859 -34.09681 -33.21654 -31.71731 -30.10970 -29.19111 -25.85076 -24.75799 -23.54430 -22.63438 -21.51100 -21.18267 -19.94915 -18.64418 -17.85685 -16.92566 -16.52323 -16.42207 -16.23784 -15.46124 -15.17255 -14.93614 -14.58142 -14.32793 -14.22676 -14.16672 -13.79978 -13.43970 -13.21473 -13.05053 -12.98988 -12.64149 -12.51331 -12.41866 -12.36294 -12.22506 -12.01667 -11.85496 -11.55050 -11.46126 -11.43783 -11.24945 -11.03260 -11.00421 -10.55334 -10.30564 -9.84469 -8.20905 -6.30911 1.38712 1.38867 1.52902 1.79021 2.32411 2.42495 3.11974 3.66471 3.80329 3.86570 4.02069 4.18256 4.23901 4.26910 4.28130 4.39651 4.44275 4.51351 4.62265 4.70124 4.75128 4.85243 4.86078 4.87564 4.97980 5.06124 5.11855 5.13602 5.18789 5.20995 5.23674 5.25314 5.34365 5.35885 5.45321 5.50845 5.52829 5.53976 5.75191 5.79438 5.86905 6.27203 6.73273 6.84737 7.37670 7.44227 8.90871 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030805 B = 0.003660 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.726938 B = 7648.311931 C = 7867.487204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.181 3.819 4 N -0.708 5.708 5 C 0.519 3.481 6 O -0.571 6.571 7 C -0.134 4.134 8 C -0.078 4.078 9 C 0.026 3.974 10 C -0.547 4.547 11 H 0.050 0.950 12 C 0.003 3.997 13 N -0.929 5.929 14 Si 0.962 3.038 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.275 1.275 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.129 4.129 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.410 0.590 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.000 1.000 34 H 0.000 1.000 35 H 0.265 0.735 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 1.049 25.123 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.095 3.905 4 N -0.361 5.361 5 C 0.306 3.694 6 O -0.450 6.450 7 C -0.174 4.174 8 C -0.117 4.117 9 C -0.011 4.011 10 C -0.585 4.585 11 H 0.068 0.932 12 C -0.194 4.194 13 N -0.570 5.570 14 Si 0.786 3.214 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.200 1.200 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.168 4.168 23 H 0.094 0.906 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.247 0.753 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.026 0.463 24.890 25.218 hybrid contribution -0.025 -0.085 -1.361 1.364 sum 4.001 0.378 23.530 23.870 Atomic orbital electron populations 1.21715 0.95024 1.01325 1.02113 1.21895 0.96852 0.96325 1.02326 1.20389 0.92188 0.91487 0.86387 1.46041 1.55880 1.29163 1.05023 1.20814 0.80419 0.83504 0.84631 1.90611 1.39852 1.29500 1.85078 1.21687 1.02012 1.01201 0.92457 1.21111 0.99134 0.98279 0.93141 1.19022 0.94708 0.94887 0.92506 1.21712 1.28586 1.14490 0.93671 0.93172 1.25904 0.94851 0.95817 1.02873 1.70074 1.33042 1.26105 1.27739 0.85449 0.78301 0.78654 0.78966 1.19278 1.19996 1.19997 1.21835 1.02216 0.96254 0.94859 1.21563 0.95342 0.96090 1.02697 1.21522 0.96460 1.00520 0.96667 1.21468 0.99974 0.95401 0.98511 1.21918 0.95250 0.97568 1.02025 0.90599 0.93992 0.93380 0.93376 0.90032 0.75333 0.87948 0.88041 0.94310 0.94276 0.98199 0.98210 0.92654 0.89916 0.89303 0.89948 0.92050 0.91211 0.91595 0.92660 0.93498 0.90523 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.41 71.98 0.68 -2.19 16 2 C -0.14 -2.98 4.62 30.59 0.14 -2.84 16 3 C 0.18 3.54 0.35 3.61 0.00 3.54 16 4 N -0.71 -15.53 3.12 -422.92 -1.32 -16.85 16 5 C 0.52 16.25 6.83 87.66 0.60 16.85 16 6 O -0.57 -22.46 12.28 -3.03 -0.04 -22.49 16 7 C -0.13 -4.45 5.70 29.85 0.17 -4.28 16 8 C -0.08 -3.54 4.44 30.60 0.14 -3.40 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.55 -32.71 9.11 25.60 0.23 -32.47 16 11 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 12 C 0.00 0.20 5.46 84.65 0.46 0.67 16 13 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 14 Si 0.96 45.73 29.54 68.60 2.03 47.76 16 15 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 18 C -0.11 -1.41 4.56 30.59 0.14 -1.27 16 19 C -0.12 -1.36 5.75 30.59 0.18 -1.18 16 20 C -0.11 -1.55 5.92 30.60 0.18 -1.37 16 21 C -0.12 -2.28 5.77 30.62 0.18 -2.10 16 22 C -0.13 -2.88 4.57 30.61 0.14 -2.74 16 23 H 0.08 1.11 6.83 -2.39 -0.02 1.09 16 24 H 0.04 0.95 6.96 -2.39 -0.02 0.94 16 25 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.05 1.45 6.28 -2.39 -0.01 1.44 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.41 6.81 7.21 -92.71 -0.67 6.14 16 29 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 32 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 33 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.08 0.87 6.69 -2.39 -0.02 0.86 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 0.73 6.79 -2.39 -0.02 0.71 16 40 H 0.07 0.83 8.14 -2.38 -0.02 0.82 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.05 1.07 7.60 -2.39 -0.02 1.05 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.05 1.45 6.24 -2.39 -0.01 1.43 16 Total: -1.00 -70.93 341.56 4.61 -66.32 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.27 Total: 13.20 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 3.38 Total: -31.25 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -1.03 Total: -73.54 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.04 Total: -22.49 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -70.93 4.61 -66.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594039905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.878 kcal (2) G-P(sol) polarization free energy of solvation -70.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds