Wall clock time and date at job start Mon Mar 30 2020 07:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42906 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00168 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46947 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47206 * 65.00095 * 12 11 10 14 14 C 1.46851 * 111.00007 * 66.04438 * 13 12 11 15 15 C 1.53035 * 109.52282 * 174.15961 * 14 13 12 16 16 C 1.53127 * 109.27661 * 59.18029 * 15 14 13 17 17 C 1.53118 * 109.15763 * 302.34430 * 16 15 14 18 18 H 1.08999 * 109.50531 * 297.71448 * 17 16 15 19 19 C 1.53007 * 109.49757 * 177.63634 * 17 16 15 20 20 C 1.53785 * 113.61187 * 157.50082 * 19 17 16 21 21 C 1.53781 * 87.07842 * 220.01628 * 20 19 17 22 22 C 1.53780 * 113.61559 * 60.00262 * 19 17 16 23 23 C 1.46843 * 110.99819 * 301.83517 * 13 12 11 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 26 26 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 27 27 H 1.09003 * 109.46840 * 299.99743 * 11 10 9 28 28 H 1.08995 * 109.47099 * 60.00204 * 11 10 9 29 29 H 1.09002 * 109.46860 * 184.99748 * 12 11 10 30 30 H 1.09000 * 109.47184 * 304.99787 * 12 11 10 31 31 H 1.09000 * 109.46130 * 294.18047 * 14 13 12 32 32 H 1.09001 * 109.45956 * 54.14361 * 14 13 12 33 33 H 1.08998 * 109.50501 * 179.11570 * 15 14 13 34 34 H 1.08993 * 109.50575 * 299.19922 * 15 14 13 35 35 H 1.09000 * 109.52040 * 62.25178 * 16 15 14 36 36 H 1.09005 * 109.52149 * 182.43915 * 16 15 14 37 37 H 1.09002 * 112.84853 * 288.80280 * 19 17 16 38 38 H 1.08999 * 113.61168 * 334.56328 * 20 19 17 39 39 H 1.08996 * 113.61698 * 105.46775 * 20 19 17 40 40 H 1.08993 * 113.61741 * 270.88118 * 21 20 19 41 41 H 1.09004 * 113.69101 * 139.98547 * 21 20 19 42 42 H 1.09000 * 113.61058 * 254.52453 * 22 19 17 43 43 H 1.08998 * 113.61342 * 25.42859 * 22 19 17 44 44 H 1.08999 * 109.46216 * 305.85686 * 23 13 12 45 45 H 1.09002 * 109.46344 * 65.82716 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9879 -2.5414 -0.0001 11 6 5.4124 -2.6542 -0.0001 12 6 5.8069 -4.1325 -0.0009 13 7 5.3676 -4.7559 -1.2565 14 6 6.0963 -4.1993 -2.4035 15 6 5.7202 -4.9698 -3.6711 16 6 4.2101 -4.8603 -3.9000 17 6 3.4750 -5.4021 -2.6709 18 1 3.7150 -6.4571 -2.5390 19 6 1.9659 -5.2421 -2.8667 20 6 1.1279 -6.2026 -2.0064 21 6 0.2079 -6.3682 -3.2274 22 6 1.4211 -5.9915 -4.0941 23 6 3.9162 -4.6190 -1.4323 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 -0.8895 26 1 3.8746 -0.6808 0.8905 27 1 5.8151 -2.1707 -0.8901 28 1 5.8152 -2.1708 0.8899 29 1 6.8897 -4.2196 0.0886 30 1 5.3310 -4.6360 0.8407 31 1 5.8333 -3.1486 -2.5256 32 1 7.1687 -4.2872 -2.2298 33 1 6.2492 -4.5464 -4.5248 34 1 5.9962 -6.0178 -3.5553 35 1 3.9400 -3.8157 -4.0549 36 1 3.9314 -5.4435 -4.7776 37 1 1.6393 -4.2038 -2.8086 38 1 1.6560 -7.1154 -1.7306 39 1 0.6442 -5.7194 -1.1575 40 1 -0.6005 -5.6382 -3.2672 41 1 -0.1372 -7.3908 -3.3804 42 1 1.1741 -5.3378 -4.9306 43 1 2.0294 -6.8466 -4.3890 44 1 3.4052 -5.0118 -0.5532 45 1 3.6633 -3.5663 -1.5591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595833758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:07 Heat of formation + Delta-G solvation = -38.321941 kcal Electronic energy + Delta-G solvation = -21873.736429 eV Core-core repulsion = 18891.204079 eV Total energy + Delta-G solvation = -2982.532349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68098 -38.08561 -36.43481 -33.49153 -32.51927 -30.74785 -28.95134 -27.38910 -25.46529 -25.03631 -23.64623 -22.12268 -21.78831 -20.94093 -19.34058 -18.93324 -16.88286 -16.09268 -15.69963 -15.22391 -15.11411 -14.61481 -14.45580 -14.27987 -13.72736 -13.58346 -13.06053 -12.74019 -12.50214 -12.30226 -12.16987 -12.03764 -11.87219 -11.65327 -11.30685 -11.06288 -10.91658 -10.83859 -10.81319 -10.57354 -10.40954 -10.26178 -10.12158 -9.91428 -9.59350 -9.52364 -9.21513 -8.86583 -8.51461 -7.74602 -6.15147 -4.14098 3.20956 3.28408 3.29419 4.21644 4.31950 4.62902 4.82329 4.95206 4.98893 5.08854 5.16353 5.17001 5.20846 5.38535 5.49183 5.52597 5.66565 5.72993 5.75005 5.85190 5.88644 5.92170 5.94804 6.00167 6.07641 6.09857 6.11500 6.17491 6.24166 6.25996 6.33138 6.35862 6.47580 6.56362 6.62212 6.69702 6.83085 6.93919 7.01750 7.46074 7.50597 7.56809 7.95141 8.60805 8.95908 9.44423 10.97588 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014383 B = 0.006731 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.232550 B = 4159.101742 C = 5417.781897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.083 0.917 9 C 0.165 3.835 10 O -0.369 6.369 11 C 0.019 3.981 12 C 0.060 3.940 13 N -0.536 5.536 14 C 0.050 3.950 15 C -0.113 4.113 16 C -0.114 4.114 17 C -0.071 4.071 18 H 0.066 0.934 19 C -0.101 4.101 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.135 4.135 23 C 0.055 3.945 24 H 0.266 0.734 25 H -0.001 1.001 26 H -0.004 1.004 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.518 -10.747 -6.698 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.101 0.899 9 C 0.090 3.910 10 O -0.288 6.288 11 C -0.061 4.061 12 C -0.069 4.069 13 N -0.259 5.259 14 C -0.078 4.078 15 C -0.151 4.151 16 C -0.152 4.152 17 C -0.090 4.090 18 H 0.085 0.915 19 C -0.120 4.120 20 C -0.173 4.173 21 C -0.181 4.181 22 C -0.173 4.173 23 C -0.072 4.072 24 H 0.076 0.924 25 H 0.017 0.983 26 H 0.014 0.986 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.332 -11.286 -6.673 16.093 hybrid contribution 0.415 2.201 0.057 2.240 sum 9.747 -9.086 -6.615 14.877 Atomic orbital electron populations 1.69872 1.05990 1.27042 1.50275 1.24754 0.94767 0.98645 0.94664 0.86895 0.80336 0.84011 0.78763 1.19955 1.19274 1.20767 1.20853 0.88094 0.95257 1.51212 0.89871 1.20605 0.96278 0.79956 0.94150 1.88051 1.17257 1.29024 1.94482 1.23109 0.85380 0.98169 0.99393 1.22238 0.99774 0.91489 0.93349 1.62165 1.06453 1.55863 1.01405 1.22087 0.97666 0.96823 0.91199 1.21541 0.96432 1.00733 0.96371 1.21592 0.94566 1.01259 0.97781 1.21177 0.93388 0.99674 0.94711 0.91513 1.22538 0.93953 0.99741 0.95799 1.22909 0.97811 0.99403 0.97178 1.22804 0.96977 1.00971 0.97347 1.22905 0.97433 0.99989 0.96955 1.22405 0.85932 1.01662 0.97165 0.92384 0.98295 0.98602 0.94441 0.94168 0.90327 0.90061 0.94715 0.91666 0.92214 0.91633 0.92157 0.92334 0.88620 0.90605 0.91227 0.90273 0.92161 0.92007 0.90661 0.91032 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.98 9.99 -34.44 -0.34 -15.32 16 8 H 0.08 2.63 8.06 -52.49 -0.42 2.20 16 9 C 0.17 4.13 4.76 36.00 0.17 4.30 16 10 O -0.37 -8.19 6.77 -35.23 -0.24 -8.43 16 11 C 0.02 0.32 5.76 37.16 0.21 0.54 16 12 C 0.06 0.88 5.93 -3.82 -0.02 0.86 16 13 N -0.54 -8.12 4.86 -234.67 -1.14 -9.26 16 14 C 0.05 0.69 5.06 -3.83 -0.02 0.67 16 15 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 16 C -0.11 -1.52 5.04 -26.60 -0.13 -1.65 16 17 C -0.07 -1.02 2.10 -90.54 -0.19 -1.21 16 18 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 19 C -0.10 -1.50 3.13 -89.80 -0.28 -1.78 16 20 C -0.14 -1.91 7.63 -25.92 -0.20 -2.11 16 21 C -0.14 -1.82 8.08 -25.92 -0.21 -2.03 16 22 C -0.14 -1.69 6.73 -25.92 -0.17 -1.87 16 23 C 0.06 0.94 3.50 -3.84 -0.01 0.93 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 26 H 0.00 -0.09 7.57 -51.93 -0.39 -0.48 16 27 H 0.04 0.64 6.46 -51.93 -0.34 0.31 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.03 0.53 6.65 -51.93 -0.35 0.19 16 32 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.70 7.55 -51.93 -0.39 0.30 16 37 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 44 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 45 H 0.08 1.65 5.58 -51.93 -0.29 1.36 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -29.66 340.12 -10.06 -39.73 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.45 Total: 0.77 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -1.46 Total: -18.19 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.37 Total: -35.69 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.24 Total: -8.43 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.66 -10.06 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595833758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.403 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds