Wall clock time and date at job start Mon Mar 30 2020 07:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42906 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00168 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46947 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47206 * 65.00095 * 12 11 10 14 14 C 1.46851 * 111.00007 * 66.04438 * 13 12 11 15 15 C 1.53035 * 109.52282 * 174.15961 * 14 13 12 16 16 C 1.53127 * 109.27661 * 59.18029 * 15 14 13 17 17 C 1.53118 * 109.15763 * 302.34430 * 16 15 14 18 18 H 1.08999 * 109.50531 * 297.71448 * 17 16 15 19 19 C 1.53007 * 109.49757 * 177.63634 * 17 16 15 20 20 C 1.53785 * 113.61187 * 157.50082 * 19 17 16 21 21 C 1.53781 * 87.07842 * 220.01628 * 20 19 17 22 22 C 1.53780 * 113.61559 * 60.00262 * 19 17 16 23 23 C 1.46843 * 110.99819 * 301.83517 * 13 12 11 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 26 26 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 27 27 H 1.09003 * 109.46840 * 299.99743 * 11 10 9 28 28 H 1.08995 * 109.47099 * 60.00204 * 11 10 9 29 29 H 1.09002 * 109.46860 * 184.99748 * 12 11 10 30 30 H 1.09000 * 109.47184 * 304.99787 * 12 11 10 31 31 H 1.09000 * 109.46130 * 294.18047 * 14 13 12 32 32 H 1.09001 * 109.45956 * 54.14361 * 14 13 12 33 33 H 1.08998 * 109.50501 * 179.11570 * 15 14 13 34 34 H 1.08993 * 109.50575 * 299.19922 * 15 14 13 35 35 H 1.09000 * 109.52040 * 62.25178 * 16 15 14 36 36 H 1.09005 * 109.52149 * 182.43915 * 16 15 14 37 37 H 1.09002 * 112.84853 * 288.80280 * 19 17 16 38 38 H 1.08999 * 113.61168 * 334.56328 * 20 19 17 39 39 H 1.08996 * 113.61698 * 105.46775 * 20 19 17 40 40 H 1.08993 * 113.61741 * 270.88118 * 21 20 19 41 41 H 1.09004 * 113.69101 * 139.98547 * 21 20 19 42 42 H 1.09000 * 113.61058 * 254.52453 * 22 19 17 43 43 H 1.08998 * 113.61342 * 25.42859 * 22 19 17 44 44 H 1.08999 * 109.46216 * 305.85686 * 23 13 12 45 45 H 1.09002 * 109.46344 * 65.82716 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9879 -2.5414 -0.0001 11 6 5.4124 -2.6542 -0.0001 12 6 5.8069 -4.1325 -0.0009 13 7 5.3676 -4.7559 -1.2565 14 6 6.0963 -4.1993 -2.4035 15 6 5.7202 -4.9698 -3.6711 16 6 4.2101 -4.8603 -3.9000 17 6 3.4750 -5.4021 -2.6709 18 1 3.7150 -6.4571 -2.5390 19 6 1.9659 -5.2421 -2.8667 20 6 1.1279 -6.2026 -2.0064 21 6 0.2079 -6.3682 -3.2274 22 6 1.4211 -5.9915 -4.0941 23 6 3.9162 -4.6190 -1.4323 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 -0.8895 26 1 3.8746 -0.6808 0.8905 27 1 5.8151 -2.1707 -0.8901 28 1 5.8152 -2.1708 0.8899 29 1 6.8897 -4.2196 0.0886 30 1 5.3310 -4.6360 0.8407 31 1 5.8333 -3.1486 -2.5256 32 1 7.1687 -4.2872 -2.2298 33 1 6.2492 -4.5464 -4.5248 34 1 5.9962 -6.0178 -3.5553 35 1 3.9400 -3.8157 -4.0549 36 1 3.9314 -5.4435 -4.7776 37 1 1.6393 -4.2038 -2.8086 38 1 1.6560 -7.1154 -1.7306 39 1 0.6442 -5.7194 -1.1575 40 1 -0.6005 -5.6382 -3.2672 41 1 -0.1372 -7.3908 -3.3804 42 1 1.1741 -5.3378 -4.9306 43 1 2.0294 -6.8466 -4.3890 44 1 3.4052 -5.0118 -0.5532 45 1 3.6633 -3.5663 -1.5591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595833758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:06 Heat of formation + Delta-G solvation = -56.390598 kcal Electronic energy + Delta-G solvation = -21874.519944 eV Core-core repulsion = 18891.204079 eV Total energy + Delta-G solvation = -2983.315865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90170 -39.40062 -37.95847 -35.08572 -34.38461 -31.90110 -30.68598 -29.10102 -26.60169 -26.19489 -24.99576 -23.98932 -23.13781 -22.16514 -20.57353 -20.10323 -19.04706 -17.55696 -17.32591 -16.69904 -16.40259 -16.17403 -15.75488 -15.54190 -15.22862 -14.89966 -14.70316 -14.32560 -13.89277 -13.55195 -13.38429 -13.28073 -13.25735 -13.15353 -12.83128 -12.72204 -12.53548 -12.21681 -11.98919 -11.89413 -11.85350 -11.54755 -11.43603 -11.38925 -11.28387 -10.95735 -10.76491 -10.66002 -10.31158 -9.08146 -8.40856 -6.48041 1.27065 1.29542 1.39986 2.23826 2.90688 2.91422 3.17440 3.68701 3.80040 3.85522 3.97342 4.04591 4.12890 4.14820 4.25734 4.30772 4.42863 4.46440 4.53724 4.59805 4.61490 4.74002 4.75419 4.87303 4.88816 4.90806 4.94456 4.97117 5.00920 5.06510 5.10030 5.14036 5.16246 5.19147 5.33044 5.38243 5.43664 5.47469 5.60436 5.73558 5.88817 6.18801 6.28210 6.55352 6.68386 7.15892 8.75917 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014383 B = 0.006731 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.232550 B = 4159.101742 C = 5417.781897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.259 1.259 5 H -0.251 1.251 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.031 0.969 9 C 0.178 3.822 10 O -0.387 6.387 11 C 0.011 3.989 12 C 0.062 3.938 13 N -0.531 5.531 14 C 0.047 3.953 15 C -0.108 4.108 16 C -0.112 4.112 17 C -0.062 4.062 18 H 0.080 0.920 19 C -0.112 4.112 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.119 4.119 23 C 0.066 3.934 24 H 0.272 0.728 25 H 0.002 0.998 26 H 0.006 0.994 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.014 0.986 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.044 0.956 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.416 -11.215 -7.853 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.182 4.182 3 Si 0.772 3.228 4 H -0.183 1.183 5 H -0.175 1.175 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.050 0.950 9 C 0.103 3.897 10 O -0.307 6.307 11 C -0.067 4.067 12 C -0.066 4.066 13 N -0.254 5.254 14 C -0.081 4.081 15 C -0.145 4.145 16 C -0.150 4.150 17 C -0.081 4.081 18 H 0.098 0.902 19 C -0.131 4.131 20 C -0.177 4.177 21 C -0.176 4.176 22 C -0.156 4.156 23 C -0.062 4.062 24 H 0.081 0.919 25 H 0.019 0.981 26 H 0.024 0.976 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.135 0.865 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.062 0.938 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.247 -11.773 -7.827 18.704 hybrid contribution -0.524 2.261 0.458 2.366 sum 11.722 -9.512 -7.369 16.798 Atomic orbital electron populations 1.70028 1.08084 1.28633 1.51080 1.25770 0.95740 1.03109 0.93621 0.85689 0.79316 0.78078 0.79760 1.18349 1.17521 1.19704 1.21069 0.90623 0.93739 1.52053 0.95028 1.20261 0.93519 0.81624 0.94343 1.88074 1.20646 1.27289 1.94657 1.23433 0.82565 1.00495 1.00234 1.22364 1.01863 0.89329 0.93027 1.62216 1.05039 1.55818 1.02357 1.22230 0.98840 0.95777 0.91219 1.21547 0.95285 1.01403 0.96303 1.21583 0.95640 1.00041 0.97715 1.21111 0.92970 0.99818 0.94204 0.90166 1.22485 0.94717 0.97718 0.98211 1.22956 0.98352 0.99607 0.96746 1.22777 0.96606 1.02075 0.96179 1.22856 0.96929 1.00144 0.95694 1.22139 0.87407 0.99264 0.97344 0.91857 0.98080 0.97645 0.93931 0.92746 0.86456 0.90807 0.96810 0.88987 0.90087 0.90330 0.94523 0.90167 0.93051 0.88831 0.94254 0.91545 0.89667 0.91714 0.88211 0.93778 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.49 13.96 21.45 0.30 -59.19 16 2 C 0.02 0.95 5.47 84.66 0.46 1.41 16 3 Si 0.95 44.17 27.47 68.60 1.88 46.05 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.54 -32.95 9.99 25.60 0.26 -32.69 16 8 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 9 C 0.18 9.11 4.76 71.23 0.34 9.45 16 10 O -0.39 -17.88 6.77 -148.98 -1.01 -18.88 16 11 C 0.01 0.38 5.76 71.98 0.41 0.79 16 12 C 0.06 1.75 5.93 86.30 0.51 2.26 16 13 N -0.53 -15.57 4.86 -896.35 -4.35 -19.92 16 14 C 0.05 1.18 5.06 86.32 0.44 1.62 16 15 C -0.11 -2.32 6.09 30.65 0.19 -2.13 16 16 C -0.11 -2.85 5.04 30.68 0.15 -2.70 16 17 C -0.06 -1.82 2.10 -10.74 -0.02 -1.84 16 18 H 0.08 2.16 7.94 -2.39 -0.02 2.14 16 19 C -0.11 -3.51 3.13 -10.26 -0.03 -3.55 16 20 C -0.14 -4.13 7.63 31.12 0.24 -3.89 16 21 C -0.14 -3.51 8.08 31.12 0.25 -3.26 16 22 C -0.12 -2.87 6.73 31.12 0.21 -2.66 16 23 C 0.07 2.36 3.50 86.33 0.30 2.66 16 24 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 25 H 0.00 0.08 7.20 -2.38 -0.02 0.06 16 26 H 0.01 0.29 7.57 -2.39 -0.02 0.27 16 27 H 0.04 1.42 6.46 -2.39 -0.02 1.40 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.12 2.43 8.06 -2.39 -0.02 2.41 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.01 0.41 6.65 -2.39 -0.02 0.39 16 32 H 0.09 1.85 8.06 -2.39 -0.02 1.83 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.70 7.55 -2.38 -0.02 1.68 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.09 2.42 7.96 -2.39 -0.02 2.40 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.10 1.97 8.10 -2.39 -0.02 1.95 16 44 H 0.04 1.76 8.12 -2.39 -0.02 1.74 16 45 H 0.04 1.72 5.58 -2.39 -0.01 1.71 16 Total: -1.00 -68.80 340.12 1.39 -67.41 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.86 Total: 19.07 kcal Atomic # 6 Polarization: -38.24 SS G_CDS: 3.71 Total: -34.53 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -4.06 Total: -79.11 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -1.01 Total: -18.88 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -68.80 1.39 -67.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595833758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.015 kcal (2) G-P(sol) polarization free energy of solvation -68.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds