Wall clock time and date at job start Mon Mar 30 2020 07:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48496 * 109.46988 * 269.99774 * 3 2 1 5 5 H 1.48499 * 109.47128 * 29.99747 * 3 2 1 6 6 H 1.48497 * 109.47350 * 149.99653 * 3 2 1 7 7 C 1.37878 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00170 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47098 * 180.02562 * 9 7 2 11 11 C 1.42896 * 113.99876 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47247 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46843 * 64.99704 * 12 11 10 14 14 C 1.46843 * 110.99871 * 66.05309 * 13 12 11 15 15 C 1.53043 * 109.52364 * 185.83917 * 14 13 12 16 16 C 1.53119 * 109.27383 * 300.81673 * 15 14 13 17 17 C 1.53118 * 109.16491 * 57.65488 * 16 15 14 18 18 H 1.09006 * 109.50236 * 62.31982 * 17 16 15 19 19 C 1.52991 * 109.50635 * 182.40195 * 17 16 15 20 20 C 1.53781 * 113.61529 * 300.00076 * 19 17 16 21 21 C 1.53786 * 87.17350 * 219.97788 * 20 19 17 22 22 C 1.53781 * 113.61611 * 202.50270 * 19 17 16 23 23 C 1.46854 * 110.99797 * 190.25786 * 13 12 11 24 24 H 0.96994 * 120.00170 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47098 * 59.99878 * 9 7 2 26 26 H 1.09000 * 109.47087 * 299.99731 * 9 7 2 27 27 H 1.09000 * 109.47348 * 60.00020 * 11 10 9 28 28 H 1.08994 * 109.47442 * 299.99577 * 11 10 9 29 29 H 1.09005 * 109.46971 * 305.00072 * 12 11 10 30 30 H 1.08994 * 109.47636 * 184.99835 * 12 11 10 31 31 H 1.09002 * 109.46891 * 65.81744 * 14 13 12 32 32 H 1.09005 * 109.45946 * 305.84791 * 14 13 12 33 33 H 1.09005 * 109.50190 * 180.87590 * 15 14 13 34 34 H 1.08996 * 109.53545 * 60.77932 * 15 14 13 35 35 H 1.09002 * 109.52526 * 297.74495 * 16 15 14 36 36 H 1.09007 * 109.57068 * 177.59185 * 16 15 14 37 37 H 1.09003 * 112.84801 * 71.19665 * 19 17 16 38 38 H 1.09002 * 113.61445 * 334.56787 * 20 19 17 39 39 H 1.09002 * 113.61408 * 105.38518 * 20 19 17 40 40 H 1.08992 * 113.61675 * 140.02412 * 21 20 19 41 41 H 1.09000 * 113.60973 * 270.92699 * 21 20 19 42 42 H 1.09005 * 113.61471 * 254.53285 * 22 19 17 43 43 H 1.08996 * 113.61178 * 25.34627 * 22 19 17 44 44 H 1.08996 * 109.46317 * 54.14625 * 23 13 12 45 45 H 1.08998 * 109.45991 * 294.17754 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0017 11 6 1.5651 -4.8754 0.0013 12 6 2.6480 -5.9562 0.0020 13 7 3.4072 -5.8878 1.2578 14 6 2.5605 -6.2409 2.4044 15 6 3.3395 -6.0190 3.7029 16 6 4.6012 -6.8864 3.6900 17 6 5.4418 -6.5328 2.4600 18 1 5.7565 -5.4910 2.5215 19 6 6.6750 -7.4367 2.4069 20 6 7.5872 -7.3071 3.6381 21 6 8.7787 -7.3985 2.6702 22 6 7.8341 -6.8497 1.5842 23 6 4.6018 -6.7398 1.1975 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 0.9459 -4.9826 -0.8894 28 1 0.9440 -4.9824 0.8905 29 1 3.3222 -5.7957 -0.8394 30 1 2.1821 -6.9375 -0.0879 31 1 2.2678 -7.2883 2.3310 32 1 1.6689 -5.6139 2.4042 33 1 2.7161 -6.2959 4.5531 34 1 3.6205 -4.9690 3.7845 35 1 4.3195 -7.9386 3.6485 36 1 5.1817 -6.7002 4.5937 37 1 6.4332 -8.4678 2.1492 38 1 7.5067 -6.3438 4.1418 39 1 7.5165 -8.1508 4.3246 40 1 9.5973 -6.7238 2.9205 41 1 9.1122 -8.4193 2.4835 42 1 7.9638 -7.3248 0.6117 43 1 7.8202 -5.7614 1.5250 44 1 5.1927 -6.4752 0.3207 45 1 4.2995 -7.7848 1.1297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595833759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:09 Heat of formation + Delta-G solvation = -44.127735 kcal Electronic energy + Delta-G solvation = -20900.854491 eV Core-core repulsion = 17918.070384 eV Total energy + Delta-G solvation = -2982.784107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85669 -38.03985 -36.36701 -33.53993 -32.51286 -31.01646 -28.89849 -26.73135 -25.82797 -25.34853 -23.56441 -22.31317 -22.20959 -20.69551 -19.69562 -19.31999 -16.36489 -16.17456 -15.67057 -15.54838 -14.93199 -14.79950 -14.29905 -14.21035 -14.00862 -13.73733 -13.31139 -12.96732 -12.66068 -12.53801 -12.40815 -12.01276 -11.93002 -11.62612 -11.25224 -11.06663 -10.92109 -10.78615 -10.71806 -10.65468 -10.58775 -10.51548 -10.39493 -10.03643 -9.90424 -9.69995 -9.01334 -8.72175 -8.07015 -7.94882 -6.04456 -4.05069 3.34659 3.39307 3.45549 4.04363 4.40874 4.43219 4.54886 4.63649 4.71195 4.92116 4.98969 5.08401 5.11888 5.32019 5.32201 5.43219 5.47196 5.57403 5.59225 5.62494 5.66565 5.68798 5.71159 5.76438 5.81946 5.85957 5.90724 5.94815 6.04756 6.09324 6.17553 6.18604 6.24168 6.35247 6.38046 6.41808 6.57619 7.18332 7.38246 7.40263 7.51555 7.87743 8.24529 8.70393 9.10195 9.59592 11.07342 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.003942 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.475912 B = 7101.156897 C = 7742.865784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.066 3.934 12 C 0.062 3.938 13 N -0.523 5.523 14 C 0.055 3.945 15 C -0.118 4.118 16 C -0.111 4.111 17 C -0.074 4.074 18 H 0.082 0.918 19 C -0.104 4.104 20 C -0.134 4.134 21 C -0.145 4.145 22 C -0.137 4.137 23 C 0.066 3.934 24 H 0.263 0.737 25 H 0.001 0.999 26 H 0.002 0.998 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.024 0.976 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.316 -17.823 6.127 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.298 6.298 11 C -0.012 4.012 12 C -0.065 4.065 13 N -0.248 5.248 14 C -0.073 4.073 15 C -0.155 4.155 16 C -0.148 4.148 17 C -0.093 4.093 18 H 0.100 0.900 19 C -0.122 4.122 20 C -0.171 4.171 21 C -0.182 4.182 22 C -0.174 4.174 23 C -0.062 4.062 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 11.508 -17.181 6.186 21.585 hybrid contribution -0.362 -0.004 -0.174 0.402 sum 11.146 -17.185 6.013 21.347 Atomic orbital electron populations 1.69968 1.06099 1.27006 1.50998 1.24947 0.94951 0.99381 0.95317 0.86353 0.79715 0.82358 0.78170 1.20534 1.21157 1.19609 1.21072 0.94085 0.89369 1.50187 0.91538 1.20162 0.88866 0.83973 0.95020 1.87948 1.34589 1.12313 1.94994 1.22264 0.93886 0.86322 0.98698 1.22111 0.96233 0.95890 0.92312 1.61748 1.07025 1.53504 1.02491 1.22123 0.96531 0.97890 0.90773 1.21578 0.96274 1.01329 0.96351 1.21573 0.96372 0.99103 0.97800 1.21192 0.93716 1.00064 0.94324 0.89970 1.22540 0.93506 0.99289 0.96914 1.22899 0.95945 1.02006 0.96300 1.22863 0.96874 1.01028 0.97480 1.23009 0.95790 1.01155 0.97449 1.22050 0.91959 0.93846 0.98360 0.92778 0.98094 0.97996 0.94460 0.94608 0.90219 0.94638 0.95820 0.90306 0.91941 0.90655 0.92795 0.92008 0.89768 0.90012 0.91940 0.91670 0.90596 0.91806 0.89753 0.90934 0.95819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -15.40 9.43 -34.44 -0.32 -15.72 16 8 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 9 C 0.19 5.50 5.69 36.01 0.20 5.70 16 10 O -0.38 -9.51 10.27 -35.23 -0.36 -9.87 16 11 C 0.07 1.28 6.00 37.16 0.22 1.51 16 12 C 0.06 0.99 5.34 -3.82 -0.02 0.97 16 13 N -0.52 -8.22 4.60 -234.66 -1.08 -9.30 16 14 C 0.05 0.78 5.30 -3.83 -0.02 0.76 16 15 C -0.12 -1.49 6.09 -26.65 -0.16 -1.65 16 16 C -0.11 -1.21 5.04 -26.61 -0.13 -1.34 16 17 C -0.07 -0.85 2.10 -90.54 -0.19 -1.04 16 18 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 19 C -0.10 -0.98 3.13 -89.81 -0.28 -1.26 16 20 C -0.13 -1.15 6.72 -25.92 -0.17 -1.33 16 21 C -0.15 -1.19 8.10 -25.77 -0.21 -1.40 16 22 C -0.14 -1.27 7.64 -25.78 -0.20 -1.47 16 23 C 0.07 0.85 4.74 -3.83 -0.02 0.83 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 26 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.68 6.23 -51.93 -0.32 0.35 16 29 H 0.08 1.26 7.98 -51.93 -0.41 0.85 16 30 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 1.24 6.13 -51.93 -0.32 0.92 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.62 7.55 -51.93 -0.39 0.23 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.86 7.96 -51.93 -0.41 0.44 16 44 H 0.07 0.95 8.01 -51.93 -0.42 0.53 16 45 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 349.81 15.07 5.27 5.27 Total: -1.00 -31.57 349.81 -10.43 -42.00 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -8.57 Total: -4.68 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -1.40 Total: -13.94 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.34 Total: -36.07 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.36 Total: -9.87 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.57 -10.43 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595833759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.132 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds