Wall clock time and date at job start Mon Mar 30 2020 07:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48496 * 109.46988 * 269.99774 * 3 2 1 5 5 H 1.48499 * 109.47128 * 29.99747 * 3 2 1 6 6 H 1.48497 * 109.47350 * 149.99653 * 3 2 1 7 7 C 1.37878 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00170 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47098 * 180.02562 * 9 7 2 11 11 C 1.42896 * 113.99876 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47247 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46843 * 64.99704 * 12 11 10 14 14 C 1.46843 * 110.99871 * 66.05309 * 13 12 11 15 15 C 1.53043 * 109.52364 * 185.83917 * 14 13 12 16 16 C 1.53119 * 109.27383 * 300.81673 * 15 14 13 17 17 C 1.53118 * 109.16491 * 57.65488 * 16 15 14 18 18 H 1.09006 * 109.50236 * 62.31982 * 17 16 15 19 19 C 1.52991 * 109.50635 * 182.40195 * 17 16 15 20 20 C 1.53781 * 113.61529 * 300.00076 * 19 17 16 21 21 C 1.53786 * 87.17350 * 219.97788 * 20 19 17 22 22 C 1.53781 * 113.61611 * 202.50270 * 19 17 16 23 23 C 1.46854 * 110.99797 * 190.25786 * 13 12 11 24 24 H 0.96994 * 120.00170 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47098 * 59.99878 * 9 7 2 26 26 H 1.09000 * 109.47087 * 299.99731 * 9 7 2 27 27 H 1.09000 * 109.47348 * 60.00020 * 11 10 9 28 28 H 1.08994 * 109.47442 * 299.99577 * 11 10 9 29 29 H 1.09005 * 109.46971 * 305.00072 * 12 11 10 30 30 H 1.08994 * 109.47636 * 184.99835 * 12 11 10 31 31 H 1.09002 * 109.46891 * 65.81744 * 14 13 12 32 32 H 1.09005 * 109.45946 * 305.84791 * 14 13 12 33 33 H 1.09005 * 109.50190 * 180.87590 * 15 14 13 34 34 H 1.08996 * 109.53545 * 60.77932 * 15 14 13 35 35 H 1.09002 * 109.52526 * 297.74495 * 16 15 14 36 36 H 1.09007 * 109.57068 * 177.59185 * 16 15 14 37 37 H 1.09003 * 112.84801 * 71.19665 * 19 17 16 38 38 H 1.09002 * 113.61445 * 334.56787 * 20 19 17 39 39 H 1.09002 * 113.61408 * 105.38518 * 20 19 17 40 40 H 1.08992 * 113.61675 * 140.02412 * 21 20 19 41 41 H 1.09000 * 113.60973 * 270.92699 * 21 20 19 42 42 H 1.09005 * 113.61471 * 254.53285 * 22 19 17 43 43 H 1.08996 * 113.61178 * 25.34627 * 22 19 17 44 44 H 1.08996 * 109.46317 * 54.14625 * 23 13 12 45 45 H 1.08998 * 109.45991 * 294.17754 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0017 11 6 1.5651 -4.8754 0.0013 12 6 2.6480 -5.9562 0.0020 13 7 3.4072 -5.8878 1.2578 14 6 2.5605 -6.2409 2.4044 15 6 3.3395 -6.0190 3.7029 16 6 4.6012 -6.8864 3.6900 17 6 5.4418 -6.5328 2.4600 18 1 5.7565 -5.4910 2.5215 19 6 6.6750 -7.4367 2.4069 20 6 7.5872 -7.3071 3.6381 21 6 8.7787 -7.3985 2.6702 22 6 7.8341 -6.8497 1.5842 23 6 4.6018 -6.7398 1.1975 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 0.9459 -4.9826 -0.8894 28 1 0.9440 -4.9824 0.8905 29 1 3.3222 -5.7957 -0.8394 30 1 2.1821 -6.9375 -0.0879 31 1 2.2678 -7.2883 2.3310 32 1 1.6689 -5.6139 2.4042 33 1 2.7161 -6.2959 4.5531 34 1 3.6205 -4.9690 3.7845 35 1 4.3195 -7.9386 3.6485 36 1 5.1817 -6.7002 4.5937 37 1 6.4332 -8.4678 2.1492 38 1 7.5067 -6.3438 4.1418 39 1 7.5165 -8.1508 4.3246 40 1 9.5973 -6.7238 2.9205 41 1 9.1122 -8.4193 2.4835 42 1 7.9638 -7.3248 0.6117 43 1 7.8202 -5.7614 1.5250 44 1 5.1927 -6.4752 0.3207 45 1 4.2995 -7.7848 1.1297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595833759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:09 Heat of formation + Delta-G solvation = -62.955760 kcal Electronic energy + Delta-G solvation = -20901.670936 eV Core-core repulsion = 17918.070384 eV Total energy + Delta-G solvation = -2983.600552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77444 -39.16364 -38.06955 -35.10245 -34.37761 -32.00966 -30.49398 -28.74094 -26.62469 -26.19570 -24.79665 -24.39257 -23.32461 -21.91079 -20.64259 -20.12702 -18.61426 -17.49589 -17.35454 -16.61984 -16.33417 -15.97851 -15.84019 -15.52672 -15.26377 -14.88879 -14.72409 -14.40372 -13.69604 -13.61038 -13.54899 -13.27721 -13.19378 -12.96730 -12.76678 -12.70154 -12.55691 -12.23816 -12.02826 -11.93943 -11.78049 -11.55126 -11.43754 -11.27968 -11.24100 -10.85099 -10.77399 -10.65586 -10.17160 -9.10420 -8.31733 -6.43750 1.39165 1.42452 1.54703 2.35315 2.92650 3.01722 3.24629 3.63170 3.80509 3.84892 3.97770 4.00832 4.09374 4.18900 4.24509 4.29511 4.41794 4.43785 4.57449 4.58424 4.61782 4.68504 4.81045 4.82137 4.88977 4.91270 4.93785 4.95577 4.99592 5.04891 5.08804 5.14500 5.16165 5.19029 5.24407 5.37584 5.44309 5.53550 5.55817 5.74357 5.97784 6.20559 6.30109 6.57485 6.86804 7.28554 8.80825 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.003942 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.475912 B = 7101.156897 C = 7742.865784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.210 3.790 10 O -0.395 6.395 11 C 0.057 3.943 12 C 0.071 3.929 13 N -0.553 5.553 14 C 0.055 3.945 15 C -0.117 4.117 16 C -0.104 4.104 17 C -0.070 4.070 18 H 0.054 0.946 19 C -0.098 4.098 20 C -0.132 4.132 21 C -0.139 4.139 22 C -0.143 4.143 23 C 0.068 3.932 24 H 0.271 0.729 25 H -0.017 1.017 26 H -0.020 1.020 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.562 -18.874 6.603 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.135 3.865 10 O -0.315 6.315 11 C -0.020 4.020 12 C -0.057 4.057 13 N -0.279 5.279 14 C -0.073 4.073 15 C -0.154 4.154 16 C -0.141 4.141 17 C -0.089 4.089 18 H 0.073 0.927 19 C -0.117 4.117 20 C -0.169 4.169 21 C -0.176 4.176 22 C -0.180 4.180 23 C -0.059 4.059 24 H 0.080 0.920 25 H 0.001 0.999 26 H -0.002 1.002 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.756 -18.260 6.663 23.249 hybrid contribution -0.804 0.264 -0.329 0.908 sum 11.951 -17.996 6.333 22.512 Atomic orbital electron populations 1.70072 1.07749 1.28614 1.50668 1.25966 0.95972 1.03367 0.93913 0.85184 0.78329 0.76997 0.78907 1.19130 1.19759 1.19041 1.21374 0.93978 0.90931 1.52042 0.92305 1.19772 0.88651 0.85046 0.93020 1.87904 1.34678 1.13861 1.95028 1.22617 0.95569 0.84678 0.99174 1.22016 0.95350 0.95709 0.92630 1.61702 1.08129 1.55359 1.02665 1.22110 0.95732 0.98406 0.91006 1.21574 0.97455 1.00139 0.96275 1.21529 0.95297 0.99398 0.97878 1.21133 0.94560 0.99095 0.94131 0.92711 1.22518 0.92393 0.99227 0.97562 1.22880 0.95711 1.02121 0.96215 1.22861 0.96596 1.01704 0.96475 1.23015 0.96549 1.00299 0.98169 1.22073 0.90840 0.94149 0.98828 0.92048 0.99886 1.00191 0.93578 0.94450 0.90443 0.91408 0.93805 0.92693 0.90205 0.93468 0.91202 0.90929 0.88543 0.90815 0.90656 0.91531 0.89263 0.91407 0.91358 0.91548 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.98 45.69 29.54 68.60 2.03 47.72 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.55 -33.90 9.43 25.60 0.24 -33.66 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.21 12.41 5.69 71.24 0.41 12.81 16 10 O -0.40 -20.54 10.27 -148.98 -1.53 -22.07 16 11 C 0.06 2.24 6.00 71.98 0.43 2.67 16 12 C 0.07 2.19 5.34 86.30 0.46 2.65 16 13 N -0.55 -17.23 4.60 -896.33 -4.13 -21.35 16 14 C 0.06 1.54 5.30 86.33 0.46 2.00 16 15 C -0.12 -2.89 6.09 30.65 0.19 -2.71 16 16 C -0.10 -2.07 5.04 30.67 0.15 -1.92 16 17 C -0.07 -1.55 2.10 -10.74 -0.02 -1.57 16 18 H 0.05 1.51 7.94 -2.38 -0.02 1.49 16 19 C -0.10 -1.67 3.13 -10.27 -0.03 -1.70 16 20 C -0.13 -2.00 6.72 31.12 0.21 -1.79 16 21 C -0.14 -2.01 8.10 31.21 0.25 -1.76 16 22 C -0.14 -2.51 7.64 31.21 0.24 -2.27 16 23 C 0.07 1.68 4.74 86.32 0.41 2.09 16 24 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 25 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 26 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.46 6.23 -2.39 -0.01 1.44 16 29 H 0.08 2.42 7.98 -2.38 -0.02 2.40 16 30 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.77 6.13 -2.38 -0.01 1.75 16 33 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.31 7.55 -2.38 -0.02 1.29 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.07 1.41 7.96 -2.39 -0.02 1.39 16 44 H 0.07 1.69 8.01 -2.39 -0.02 1.67 16 45 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -68.76 349.81 1.42 -67.34 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.91 Total: 9.87 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 3.86 Total: -24.35 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -3.84 Total: -78.52 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -1.53 Total: -22.07 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -68.76 1.42 -67.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595833759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.381 kcal (2) G-P(sol) polarization free energy of solvation -68.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds