Wall clock time and date at job start Mon Mar 30 2020 08:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47215 * 2 1 4 4 C 1.52999 * 109.47521 * 294.99909 * 3 2 1 5 5 C 1.53001 * 109.47431 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47054 * 59.99518 * 5 4 3 7 7 N 1.46499 * 109.46957 * 60.00253 * 6 5 4 8 8 C 1.46495 * 119.99984 * 238.68140 * 7 6 5 9 9 C 1.34782 * 119.99849 * 58.68749 * 7 6 5 10 10 O 1.21281 * 120.00123 * 359.97438 * 9 7 6 11 11 C 1.50698 * 119.99919 * 179.97438 * 9 7 6 12 12 H 1.09001 * 109.47326 * 300.00360 * 11 9 7 13 13 C 1.53007 * 109.46949 * 59.99692 * 11 9 7 14 14 C 1.50698 * 109.47473 * 179.97438 * 11 9 7 15 15 H 1.07998 * 119.99466 * 0.02562 * 14 11 9 16 16 C 1.37870 * 120.00583 * 179.97438 * 14 11 9 17 17 N 1.31525 * 119.99739 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00578 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47032 * 89.99837 * 18 16 14 20 20 H 1.48497 * 109.47212 * 210.00513 * 18 16 14 21 21 H 1.48506 * 109.46819 * 330.00252 * 18 16 14 22 22 C 1.53000 * 109.47215 * 300.00156 * 6 5 4 23 23 C 1.52993 * 109.47326 * 60.00161 * 22 6 5 24 24 H 1.09003 * 109.46816 * 60.00249 * 1 2 3 25 25 H 1.08999 * 109.47439 * 300.00450 * 1 2 3 26 26 H 1.08998 * 109.47415 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46816 * 119.99751 * 2 1 3 28 28 H 1.08999 * 109.47439 * 239.99550 * 2 1 3 29 29 H 1.09005 * 109.47197 * 55.00003 * 3 2 1 30 30 H 1.09002 * 109.46458 * 300.00212 * 4 3 2 31 31 H 1.09000 * 109.46660 * 59.99559 * 4 3 2 32 32 H 1.09005 * 109.46610 * 299.99704 * 5 4 3 33 33 H 1.08998 * 109.46841 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46793 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.46890 * 95.83383 * 8 7 6 36 36 H 1.09001 * 109.46933 * 215.83222 * 8 7 6 37 37 H 1.08997 * 109.47319 * 335.83706 * 8 7 6 38 38 H 1.08995 * 109.47049 * 299.99620 * 13 11 9 39 39 H 1.08993 * 109.47166 * 60.00111 * 13 11 9 40 40 H 1.09005 * 109.46642 * 180.02562 * 13 11 9 41 41 H 0.96993 * 120.00019 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.46832 * 299.99839 * 22 6 5 43 43 H 1.09000 * 109.46480 * 180.02562 * 22 6 5 44 44 H 1.08999 * 109.47380 * 179.97438 * 23 22 6 45 45 H 1.09005 * 109.47197 * 59.99567 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6353 2.1265 -1.3073 5 6 2.1459 3.5688 -1.3076 6 6 3.6707 3.5701 -1.1820 7 7 4.2544 2.8452 -2.3134 8 6 5.1045 1.6763 -2.0745 9 6 4.0094 3.2539 -3.5742 10 8 3.3053 4.2214 -3.7720 11 6 4.6103 2.5087 -4.7380 12 1 5.6973 2.5299 -4.6609 13 6 4.1260 1.0574 -4.7191 14 6 4.1848 3.1629 -6.0272 15 1 3.5437 4.0318 -6.0058 16 6 4.6147 2.6530 -7.2338 17 7 5.3958 1.5952 -7.2598 18 14 4.0879 3.4644 -8.8318 19 1 5.0744 4.5098 -9.2048 20 1 4.0192 2.4423 -9.9068 21 1 2.7511 4.0864 -8.6539 22 6 4.0754 2.8860 0.1254 23 6 3.5648 1.4438 0.1256 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.6053 1.9815 0.8418 30 1 2.0699 1.5874 -2.1491 31 1 0.5490 2.1252 -1.3969 32 1 1.7115 4.1081 -0.4657 33 1 1.8571 4.0563 -2.2388 34 1 4.0345 4.5976 -1.1826 35 1 4.5056 0.7691 -2.1546 36 1 5.9036 1.6507 -2.8153 37 1 5.5366 1.7394 -1.0758 38 1 4.4335 0.5839 -3.7868 39 1 3.0390 1.0361 -4.7962 40 1 4.5610 0.5183 -5.5607 41 1 5.6980 1.2362 -8.1087 42 1 3.6410 3.4254 0.9672 43 1 5.1617 2.8873 0.2149 44 1 3.8535 0.9563 1.0568 45 1 3.9991 0.9044 -0.7162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596761758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:01 Heat of formation + Delta-G solvation = -42.877354 kcal Electronic energy + Delta-G solvation = -22369.513716 eV Core-core repulsion = 19386.783829 eV Total energy + Delta-G solvation = -2982.729887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.26316 -37.75611 -34.96270 -33.90832 -32.44419 -30.97371 -30.23850 -28.51581 -26.27408 -25.01397 -23.69485 -22.53638 -22.18588 -20.39291 -19.70055 -18.02576 -16.27874 -16.13616 -15.45601 -15.11834 -14.69830 -14.58348 -14.20290 -13.76460 -13.57348 -13.20376 -13.02447 -12.92487 -12.42637 -12.13411 -12.03582 -11.90612 -11.74064 -11.48414 -11.19879 -11.06947 -10.95280 -10.83845 -10.72606 -10.63883 -10.35150 -10.21036 -10.08283 -9.92358 -9.90597 -9.73235 -8.89528 -8.45382 -8.18706 -7.87885 -5.98514 -4.00980 3.36152 3.41652 3.48660 3.74224 3.81508 4.50462 4.71321 4.80995 4.86887 5.10291 5.27461 5.31017 5.34764 5.42900 5.47565 5.54703 5.65603 5.71075 5.72711 5.75510 5.85733 5.90507 5.96510 6.02283 6.03232 6.09222 6.15353 6.22616 6.29283 6.37329 6.43955 6.52835 6.64293 6.71867 6.74325 6.91326 7.00900 7.31310 7.54411 7.80981 8.04055 8.19054 8.47457 9.07735 9.33490 9.64289 11.09049 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025382 B = 0.005401 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.878240 B = 5182.510832 C = 5365.456051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.083 4.083 4 C -0.109 4.109 5 C -0.136 4.136 6 C 0.152 3.848 7 N -0.622 5.622 8 C 0.077 3.923 9 C 0.522 3.478 10 O -0.544 6.544 11 C 0.032 3.968 12 H 0.049 0.951 13 C -0.142 4.142 14 C -0.497 4.497 15 H 0.073 0.927 16 C 0.058 3.942 17 N -0.897 5.897 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.273 1.273 22 C -0.123 4.123 23 C -0.141 4.141 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.027 0.973 40 H 0.090 0.910 41 H 0.259 0.741 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 -3.780 16.361 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.102 4.102 4 C -0.147 4.147 5 C -0.174 4.174 6 C 0.048 3.952 7 N -0.358 5.358 8 C -0.065 4.065 9 C 0.313 3.687 10 O -0.420 6.420 11 C 0.011 3.989 12 H 0.067 0.933 13 C -0.200 4.200 14 C -0.536 4.536 15 H 0.091 0.909 16 C -0.143 4.143 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.198 1.198 22 C -0.160 4.160 23 C -0.178 4.178 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.636 -3.364 16.115 16.859 hybrid contribution -0.201 0.328 -0.787 0.876 sum -3.837 -3.036 15.328 16.090 Atomic orbital electron populations 1.21811 0.96193 1.01186 1.01840 1.21555 0.95717 0.96697 1.01674 1.21151 0.95355 0.95465 0.98184 1.21528 0.99925 0.95939 0.97268 1.21940 0.95106 0.97139 1.03253 1.20820 0.93458 0.95252 0.85627 1.48100 1.51138 1.30702 1.05882 1.22163 0.94587 0.88226 1.01566 1.21913 0.79562 0.83978 0.83243 1.90478 1.38474 1.28281 1.84742 1.18824 0.96736 0.92949 0.90418 0.93296 1.21967 0.99379 0.97731 1.00920 1.21161 1.30168 1.13208 0.89061 0.90915 1.24937 0.95104 0.95069 0.99151 1.69877 1.35128 1.22834 1.25881 0.86483 0.79221 0.78956 0.82735 1.20726 1.21356 1.19807 1.21785 1.00697 0.96677 0.96884 1.22228 0.95913 0.96707 1.02964 0.92338 0.93119 0.93163 0.92478 0.91920 0.91968 0.91510 0.92500 0.92394 0.89389 0.91844 0.92249 0.91118 0.91448 0.95649 0.95360 0.89125 0.93082 0.91226 0.91508 0.92540 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.67 37.16 0.36 -1.17 16 2 C -0.12 -1.25 5.40 -26.74 -0.14 -1.40 16 3 C -0.08 -0.95 2.19 -90.62 -0.20 -1.15 16 4 C -0.11 -1.56 4.80 -26.73 -0.13 -1.68 16 5 C -0.14 -2.12 5.22 -26.73 -0.14 -2.26 16 6 C 0.15 2.34 2.96 -67.93 -0.20 2.13 16 7 N -0.62 -11.02 2.25 -173.94 -0.39 -11.41 16 8 C 0.08 1.13 6.70 59.84 0.40 1.53 16 9 C 0.52 11.98 6.78 -10.98 -0.07 11.90 16 10 O -0.54 -14.12 13.47 5.56 0.07 -14.05 16 11 C 0.03 0.79 1.85 -92.92 -0.17 0.62 16 12 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 13 C -0.14 -3.27 8.65 37.16 0.32 -2.95 16 14 C -0.50 -14.26 8.37 -34.44 -0.29 -14.55 16 15 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 17 N -0.90 -25.36 11.32 55.43 0.63 -24.73 16 18 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 22 C -0.12 -1.42 4.91 -26.73 -0.13 -1.55 16 23 C -0.14 -1.55 4.55 -26.73 -0.12 -1.67 16 24 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.12 7.60 -51.93 -0.39 0.73 16 31 H 0.06 0.78 6.56 -51.93 -0.34 0.44 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.70 6.07 -51.93 -0.32 1.38 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.84 5.08 -51.93 -0.26 0.58 16 36 H 0.07 1.12 6.45 -51.93 -0.34 0.79 16 37 H 0.07 0.79 4.99 -51.93 -0.26 0.53 16 38 H 0.02 0.48 4.43 -51.93 -0.23 0.25 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.72 6.87 -51.93 -0.36 0.36 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.09 1.07 3.69 -51.93 -0.19 0.88 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -30.35 323.54 -7.89 -38.24 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.45 Total: 0.67 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -0.61 Total: -10.65 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.24 Total: -36.14 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.07 Total: -14.05 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.35 -7.89 -38.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596761758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.636 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds