Wall clock time and date at job start Mon Mar 30 2020 08:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47215 * 2 1 4 4 C 1.52999 * 109.47521 * 294.99909 * 3 2 1 5 5 C 1.53001 * 109.47431 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47054 * 59.99518 * 5 4 3 7 7 N 1.46499 * 109.46957 * 60.00253 * 6 5 4 8 8 C 1.46495 * 119.99984 * 238.68140 * 7 6 5 9 9 C 1.34782 * 119.99849 * 58.68749 * 7 6 5 10 10 O 1.21281 * 120.00123 * 359.97438 * 9 7 6 11 11 C 1.50698 * 119.99919 * 179.97438 * 9 7 6 12 12 H 1.09001 * 109.47326 * 300.00360 * 11 9 7 13 13 C 1.53007 * 109.46949 * 59.99692 * 11 9 7 14 14 C 1.50698 * 109.47473 * 179.97438 * 11 9 7 15 15 H 1.07998 * 119.99466 * 0.02562 * 14 11 9 16 16 C 1.37870 * 120.00583 * 179.97438 * 14 11 9 17 17 N 1.31525 * 119.99739 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00578 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47032 * 89.99837 * 18 16 14 20 20 H 1.48497 * 109.47212 * 210.00513 * 18 16 14 21 21 H 1.48506 * 109.46819 * 330.00252 * 18 16 14 22 22 C 1.53000 * 109.47215 * 300.00156 * 6 5 4 23 23 C 1.52993 * 109.47326 * 60.00161 * 22 6 5 24 24 H 1.09003 * 109.46816 * 60.00249 * 1 2 3 25 25 H 1.08999 * 109.47439 * 300.00450 * 1 2 3 26 26 H 1.08998 * 109.47415 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46816 * 119.99751 * 2 1 3 28 28 H 1.08999 * 109.47439 * 239.99550 * 2 1 3 29 29 H 1.09005 * 109.47197 * 55.00003 * 3 2 1 30 30 H 1.09002 * 109.46458 * 300.00212 * 4 3 2 31 31 H 1.09000 * 109.46660 * 59.99559 * 4 3 2 32 32 H 1.09005 * 109.46610 * 299.99704 * 5 4 3 33 33 H 1.08998 * 109.46841 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.46793 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.46890 * 95.83383 * 8 7 6 36 36 H 1.09001 * 109.46933 * 215.83222 * 8 7 6 37 37 H 1.08997 * 109.47319 * 335.83706 * 8 7 6 38 38 H 1.08995 * 109.47049 * 299.99620 * 13 11 9 39 39 H 1.08993 * 109.47166 * 60.00111 * 13 11 9 40 40 H 1.09005 * 109.46642 * 180.02562 * 13 11 9 41 41 H 0.96993 * 120.00019 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.46832 * 299.99839 * 22 6 5 43 43 H 1.09000 * 109.46480 * 180.02562 * 22 6 5 44 44 H 1.08999 * 109.47380 * 179.97438 * 23 22 6 45 45 H 1.09005 * 109.47197 * 59.99567 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6353 2.1265 -1.3073 5 6 2.1459 3.5688 -1.3076 6 6 3.6707 3.5701 -1.1820 7 7 4.2544 2.8452 -2.3134 8 6 5.1045 1.6763 -2.0745 9 6 4.0094 3.2539 -3.5742 10 8 3.3053 4.2214 -3.7720 11 6 4.6103 2.5087 -4.7380 12 1 5.6973 2.5299 -4.6609 13 6 4.1260 1.0574 -4.7191 14 6 4.1848 3.1629 -6.0272 15 1 3.5437 4.0318 -6.0058 16 6 4.6147 2.6530 -7.2338 17 7 5.3958 1.5952 -7.2598 18 14 4.0879 3.4644 -8.8318 19 1 5.0744 4.5098 -9.2048 20 1 4.0192 2.4423 -9.9068 21 1 2.7511 4.0864 -8.6539 22 6 4.0754 2.8860 0.1254 23 6 3.5648 1.4438 0.1256 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.6053 1.9815 0.8418 30 1 2.0699 1.5874 -2.1491 31 1 0.5490 2.1252 -1.3969 32 1 1.7115 4.1081 -0.4657 33 1 1.8571 4.0563 -2.2388 34 1 4.0345 4.5976 -1.1826 35 1 4.5056 0.7691 -2.1546 36 1 5.9036 1.6507 -2.8153 37 1 5.5366 1.7394 -1.0758 38 1 4.4335 0.5839 -3.7868 39 1 3.0390 1.0361 -4.7962 40 1 4.5610 0.5183 -5.5607 41 1 5.6980 1.2362 -8.1087 42 1 3.6410 3.4254 0.9672 43 1 5.1617 2.8873 0.2149 44 1 3.8535 0.9563 1.0568 45 1 3.9991 0.9044 -0.7162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596761758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:00 Heat of formation + Delta-G solvation = -59.542541 kcal Electronic energy + Delta-G solvation = -22370.236372 eV Core-core repulsion = 19386.783829 eV Total energy + Delta-G solvation = -2983.452543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.63561 -39.21758 -36.27555 -35.86542 -33.86565 -32.06984 -32.02961 -29.64244 -27.65908 -27.03660 -25.01366 -23.83270 -23.43338 -21.60091 -20.86215 -19.56195 -18.31678 -17.59352 -17.01586 -16.76380 -16.13114 -15.92037 -15.53896 -14.95426 -14.68974 -14.62220 -14.53324 -14.16171 -14.01925 -13.41826 -13.34300 -13.15856 -13.01734 -12.93679 -12.73261 -12.65978 -12.42009 -12.19196 -12.13924 -12.08993 -12.00907 -11.82225 -11.62713 -11.10435 -10.97275 -10.91725 -10.86185 -10.53202 -10.03259 -9.36897 -8.14869 -6.24827 1.38447 1.38736 1.50967 1.99294 2.26897 2.47278 3.14112 3.72016 3.82543 3.87312 4.12037 4.24321 4.30619 4.35267 4.43567 4.48641 4.56220 4.61587 4.64800 4.72024 4.73874 4.78892 4.82279 4.90139 4.96664 5.01605 5.09987 5.10467 5.16649 5.19617 5.27113 5.30010 5.37314 5.40571 5.42753 5.50157 5.57285 5.68230 5.74407 5.88839 6.01561 6.23696 6.67061 6.84615 7.41390 7.59388 8.90791 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025382 B = 0.005401 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.878240 B = 5182.510832 C = 5365.456051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.076 4.076 4 C -0.104 4.104 5 C -0.134 4.134 6 C 0.145 3.855 7 N -0.609 5.609 8 C 0.070 3.930 9 C 0.518 3.482 10 O -0.585 6.585 11 C 0.029 3.971 12 H 0.036 0.964 13 C -0.125 4.125 14 C -0.528 4.528 15 H 0.044 0.956 16 C 0.020 3.980 17 N -0.910 5.910 18 Si 0.953 3.047 19 H -0.274 1.274 20 H -0.273 1.273 21 H -0.281 1.281 22 C -0.113 4.113 23 C -0.140 4.140 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.013 0.987 40 H 0.067 0.933 41 H 0.264 0.736 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.906 -4.988 18.876 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.095 4.095 4 C -0.142 4.142 5 C -0.173 4.173 6 C 0.042 3.958 7 N -0.343 5.343 8 C -0.071 4.071 9 C 0.308 3.692 10 O -0.465 6.465 11 C 0.008 3.992 12 H 0.054 0.946 13 C -0.183 4.183 14 C -0.566 4.566 15 H 0.062 0.938 16 C -0.179 4.179 17 N -0.550 5.550 18 Si 0.779 3.221 19 H -0.199 1.199 20 H -0.198 1.198 21 H -0.206 1.206 22 C -0.151 4.151 23 C -0.177 4.177 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.032 0.968 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.173 -4.607 18.668 19.488 hybrid contribution -0.347 0.713 -1.530 1.724 sum -3.521 -3.894 17.137 17.923 Atomic orbital electron populations 1.21813 0.96071 1.01661 1.01548 1.21539 0.95859 0.95997 1.02016 1.21114 0.96118 0.95827 0.96412 1.21468 0.99606 0.94908 0.98175 1.21874 0.95649 0.97963 1.01781 1.21068 0.93105 0.94957 0.86672 1.47986 1.50356 1.31074 1.04835 1.22420 0.93964 0.87190 1.03542 1.21513 0.79402 0.83497 0.84752 1.90458 1.40365 1.29975 1.85741 1.18727 0.95913 0.94125 0.90452 0.94626 1.21768 0.98029 0.96483 1.02030 1.21293 1.30699 1.13180 0.91450 0.93764 1.25573 0.95027 0.95590 1.01715 1.69950 1.35089 1.23128 1.26785 0.85632 0.78444 0.78506 0.79514 1.19945 1.19786 1.20626 1.21780 1.01873 0.96841 0.94565 1.22235 0.95131 0.96229 1.04110 0.93969 0.92061 0.92378 0.90423 0.93204 0.90514 0.94612 0.92688 0.89984 0.94096 0.93293 0.91218 0.92391 0.87367 0.91682 0.96812 0.91375 0.92640 0.88953 0.89901 0.89531 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.67 71.98 0.70 -2.04 16 2 C -0.12 -2.11 5.40 30.59 0.17 -1.94 16 3 C -0.08 -1.51 2.19 -10.79 -0.02 -1.53 16 4 C -0.10 -2.91 4.80 30.59 0.15 -2.76 16 5 C -0.13 -4.18 5.22 30.60 0.16 -4.02 16 6 C 0.14 4.29 2.96 44.99 0.13 4.43 16 7 N -0.61 -21.45 2.25 -822.60 -1.85 -23.30 16 8 C 0.07 1.92 6.70 127.77 0.86 2.77 16 9 C 0.52 24.72 6.78 87.66 0.59 25.32 16 10 O -0.59 -32.28 13.47 -3.03 -0.04 -32.32 16 11 C 0.03 1.50 1.85 -12.29 -0.02 1.48 16 12 H 0.04 1.93 7.42 -2.39 -0.02 1.92 16 13 C -0.13 -5.88 8.65 71.98 0.62 -5.26 16 14 C -0.53 -31.60 8.37 25.60 0.21 -31.39 16 15 H 0.04 2.85 6.75 -2.91 -0.02 2.83 16 16 C 0.02 1.14 5.30 84.65 0.45 1.59 16 17 N -0.91 -52.00 11.32 21.45 0.24 -51.76 16 18 Si 0.95 46.09 29.54 68.60 2.03 48.12 16 19 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 22 C -0.11 -2.15 4.91 30.59 0.15 -2.00 16 23 C -0.14 -2.46 4.55 30.59 0.14 -2.32 16 24 H 0.04 0.88 6.57 -2.39 -0.02 0.86 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.35 8.14 -2.38 -0.02 1.34 16 30 H 0.04 1.21 7.60 -2.39 -0.02 1.19 16 31 H 0.05 1.52 6.56 -2.39 -0.02 1.51 16 32 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.04 1.67 6.07 -2.39 -0.01 1.65 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.81 5.08 -2.39 -0.01 1.80 16 36 H 0.06 1.77 6.45 -2.39 -0.02 1.75 16 37 H 0.11 2.11 4.99 -2.39 -0.01 2.10 16 38 H 0.06 2.46 4.43 -2.39 -0.01 2.45 16 39 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 3.51 6.07 -2.38 -0.01 3.50 16 41 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.37 6.87 -2.39 -0.02 1.35 16 44 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.08 1.61 3.69 -2.38 -0.01 1.60 16 Total: -1.00 -69.54 323.54 5.62 -63.92 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.96 Total: 13.03 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.28 Total: -17.68 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -1.61 Total: -75.06 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.04 Total: -32.32 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -69.54 5.62 -63.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596761758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.375 kcal (2) G-P(sol) polarization free energy of solvation -69.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds