Wall clock time and date at job start Mon Mar 30 2020 08:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46944 * 2 1 4 4 C 1.52999 * 109.46980 * 175.00310 * 3 2 1 5 5 C 1.53003 * 109.46980 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46861 * 299.99596 * 5 4 3 7 7 N 1.46499 * 109.46872 * 180.02562 * 6 5 4 8 8 C 1.46502 * 120.00240 * 306.26523 * 7 6 5 9 9 C 1.34779 * 120.00025 * 126.26938 * 7 6 5 10 10 O 1.21278 * 119.99960 * 184.03252 * 9 7 6 11 11 C 1.50694 * 119.99878 * 4.02866 * 9 7 6 12 12 H 1.09005 * 109.47394 * 41.82546 * 11 9 7 13 13 C 1.53001 * 109.47609 * 281.82204 * 11 9 7 14 14 C 1.50702 * 109.47135 * 161.82129 * 11 9 7 15 15 H 1.08003 * 119.99654 * 0.02562 * 14 11 9 16 16 C 1.37880 * 120.00177 * 180.02562 * 14 11 9 17 17 N 1.31510 * 119.99744 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99910 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47112 * 90.00068 * 18 16 14 20 20 H 1.48499 * 109.47026 * 209.99867 * 18 16 14 21 21 H 1.48496 * 109.47277 * 329.99908 * 18 16 14 22 22 C 1.52997 * 109.47177 * 60.00073 * 6 5 4 23 23 C 1.52993 * 109.47496 * 299.99870 * 22 6 5 24 24 H 1.08998 * 109.47119 * 300.00026 * 1 2 3 25 25 H 1.08998 * 109.47515 * 60.00269 * 1 2 3 26 26 H 1.09001 * 109.47146 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47119 * 239.99974 * 2 1 3 28 28 H 1.08996 * 109.47030 * 119.99917 * 2 1 3 29 29 H 1.08992 * 109.47167 * 54.99476 * 3 2 1 30 30 H 1.09000 * 109.47273 * 59.99411 * 4 3 2 31 31 H 1.09001 * 109.46881 * 299.99764 * 4 3 2 32 32 H 1.09002 * 109.46858 * 59.99655 * 5 4 3 33 33 H 1.08999 * 109.46811 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47539 * 300.00246 * 6 5 4 35 35 H 1.09004 * 109.46755 * 92.91224 * 8 7 6 36 36 H 1.08996 * 109.47569 * 212.91168 * 8 7 6 37 37 H 1.09001 * 109.47005 * 332.91615 * 8 7 6 38 38 H 1.09001 * 109.47040 * 301.49050 * 13 11 9 39 39 H 1.09005 * 109.46671 * 61.48763 * 13 11 9 40 40 H 1.08996 * 109.47522 * 181.48667 * 13 11 9 41 41 H 0.97000 * 119.99740 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.47064 * 179.97438 * 22 6 5 43 43 H 1.09000 * 109.46904 * 60.00217 * 22 6 5 44 44 H 1.09000 * 109.47327 * 300.00088 * 23 22 6 45 45 H 1.08995 * 109.47820 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1256 5 6 4.0748 2.8869 0.1250 6 6 3.6700 3.5703 -1.1827 7 7 4.1589 4.9513 -1.1835 8 6 3.8286 5.8461 -0.0715 9 6 4.9125 5.3988 -2.2075 10 8 5.3781 6.5181 -2.1738 11 6 5.1766 4.5082 -3.3940 12 1 4.2612 3.9816 -3.6641 13 6 6.2632 3.4919 -3.0372 14 6 5.6360 5.3466 -4.5590 15 1 5.7279 6.4172 -4.4508 16 6 5.9389 4.7468 -5.7630 17 7 5.8265 3.4432 -5.8949 18 14 6.5091 5.7860 -7.2068 19 1 7.9890 5.9051 -7.1772 20 1 6.0897 5.1411 -8.4770 21 1 5.9017 7.1380 -7.1140 22 6 2.1452 3.5684 -1.3084 23 6 1.6352 2.1260 -1.3077 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6053 1.9816 0.8417 30 1 3.9994 0.9053 -0.7161 31 1 3.8531 0.9571 1.0570 32 1 3.6401 3.4263 0.9666 33 1 5.1611 2.8882 0.2141 34 1 4.1046 3.0309 -2.0243 35 1 4.6221 5.8063 0.6748 36 1 3.7298 6.8661 -0.4428 37 1 2.8882 5.5314 0.3810 38 1 7.1706 4.0188 -2.7418 39 1 5.9202 2.8680 -2.2118 40 1 6.4730 2.8648 -3.9037 41 1 6.0400 3.0212 -6.7418 42 1 1.8569 4.0557 -2.2398 43 1 1.7106 4.1079 -0.4669 44 1 2.0697 1.5865 -2.1493 45 1 0.5489 2.1246 -1.3968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596761759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:04 Heat of formation + Delta-G solvation = -70.040302 kcal Electronic energy + Delta-G solvation = -21855.011603 eV Core-core repulsion = 18871.103842 eV Total energy + Delta-G solvation = -2983.907761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.78079 -38.09652 -35.18102 -33.77044 -32.39912 -30.69934 -30.57853 -28.28165 -26.48893 -25.15056 -23.70256 -22.56705 -21.84230 -20.63415 -19.60304 -18.35841 -16.38726 -16.08899 -15.46412 -14.83771 -14.65787 -14.51711 -14.33002 -13.95438 -13.49784 -13.22773 -13.17230 -12.71595 -12.59563 -12.37944 -12.15065 -11.83302 -11.61563 -11.50534 -11.41756 -11.10673 -11.00731 -10.98875 -10.72991 -10.64439 -10.58149 -10.27816 -10.24295 -10.06186 -9.97273 -9.92756 -8.94730 -8.54534 -8.25740 -7.97800 -6.00710 -4.03464 3.35410 3.40902 3.47262 3.73045 3.75999 4.48721 4.68104 4.72554 4.84165 5.04972 5.22550 5.31297 5.33446 5.36020 5.44695 5.45867 5.57159 5.62577 5.67067 5.73561 5.83409 5.89374 5.90522 5.94772 6.04652 6.06656 6.11803 6.23204 6.24489 6.27607 6.32726 6.38289 6.53017 6.58399 6.68056 6.89138 7.00507 7.21136 7.48908 7.79661 8.02134 8.15199 8.43820 9.03648 9.28664 9.61514 11.06762 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021980 B = 0.005291 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.566985 B = 5290.573991 C = 5972.342938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.112 4.112 5 C -0.125 4.125 6 C 0.136 3.864 7 N -0.627 5.627 8 C 0.089 3.911 9 C 0.520 3.480 10 O -0.547 6.547 11 C 0.032 3.968 12 H 0.048 0.952 13 C -0.134 4.134 14 C -0.499 4.499 15 H 0.070 0.930 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.129 4.129 23 C -0.112 4.112 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.030 0.970 39 H 0.016 0.984 40 H 0.094 0.906 41 H 0.260 0.740 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 -7.618 12.777 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.106 4.106 4 C -0.150 4.150 5 C -0.164 4.164 6 C 0.032 3.968 7 N -0.361 5.361 8 C -0.054 4.054 9 C 0.312 3.688 10 O -0.423 6.423 11 C 0.011 3.989 12 H 0.065 0.935 13 C -0.192 4.192 14 C -0.537 4.537 15 H 0.089 0.911 16 C -0.141 4.141 17 N -0.536 5.536 18 Si 0.727 3.273 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.168 4.168 23 C -0.150 4.150 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.127 0.873 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.034 0.966 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.055 -7.114 12.645 17.103 hybrid contribution 0.251 0.475 -0.654 0.847 sum -8.803 -6.639 11.991 16.290 Atomic orbital electron populations 1.21822 0.96161 1.01239 1.01877 1.21571 0.95681 0.96599 1.01909 1.21211 0.95564 0.95584 0.98215 1.21557 0.95059 0.96372 1.01981 1.21868 1.01176 0.95660 0.97688 1.21279 0.93744 0.82524 0.99293 1.48188 1.53926 1.11858 1.22163 1.21394 0.99103 0.95161 0.89787 1.22022 0.75318 0.88235 0.83256 1.90517 1.50161 1.21686 1.79963 1.18850 0.97018 0.93462 0.89602 0.93454 1.21796 0.98007 0.98840 1.00534 1.21129 1.44104 0.94417 0.94086 0.91148 1.24928 0.95524 0.95049 0.98641 1.69863 1.49572 1.08719 1.25409 0.86472 0.79008 0.80489 0.81366 1.20650 1.21296 1.19808 1.21917 0.95772 0.96830 1.02268 1.21602 1.00508 0.95387 0.97546 0.93026 0.92350 0.93145 0.91815 0.92298 0.91493 0.91430 0.92063 0.92091 0.91589 0.87335 0.93992 0.91577 0.92268 0.95031 0.96558 0.88743 0.92993 0.91333 0.92252 0.91379 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 37.16 0.36 -0.90 16 2 C -0.12 -1.07 5.40 -26.73 -0.14 -1.22 16 3 C -0.09 -0.88 2.19 -90.61 -0.20 -1.07 16 4 C -0.11 -1.22 5.20 -26.73 -0.14 -1.36 16 5 C -0.13 -1.61 5.10 -26.73 -0.14 -1.75 16 6 C 0.14 2.11 1.79 -67.93 -0.12 1.99 16 7 N -0.63 -11.67 2.76 -173.94 -0.48 -12.15 16 8 C 0.09 1.39 9.24 59.85 0.55 1.95 16 9 C 0.52 12.41 6.85 -10.99 -0.08 12.34 16 10 O -0.55 -14.87 15.32 5.56 0.09 -14.79 16 11 C 0.03 0.81 1.77 -92.92 -0.16 0.64 16 12 H 0.05 1.23 7.07 -51.93 -0.37 0.86 16 13 C -0.13 -3.18 8.64 37.16 0.32 -2.86 16 14 C -0.50 -14.39 8.35 -34.44 -0.29 -14.68 16 15 H 0.07 2.15 6.90 -52.48 -0.36 1.79 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.90 -25.17 11.31 55.43 0.63 -24.54 16 18 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.13 -1.75 5.28 -26.74 -0.14 -1.89 16 23 C -0.11 -1.28 4.96 -26.73 -0.13 -1.41 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.72 7.42 -51.93 -0.39 0.34 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.11 1.94 4.35 -51.93 -0.23 1.71 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.13 7.57 -51.93 -0.39 0.73 16 37 H 0.06 0.75 6.63 -51.93 -0.34 0.40 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.02 0.32 6.35 -51.93 -0.33 -0.01 16 40 H 0.09 2.43 6.03 -51.93 -0.31 2.11 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.74 6.95 -51.93 -0.36 0.37 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -30.77 338.42 -8.06 -38.83 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.97 Total: -0.78 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -0.40 Total: -8.65 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.15 Total: -36.69 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.09 Total: -14.79 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.77 -8.06 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596761759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.212 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds