Wall clock time and date at job start Mon Mar 30 2020 08:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46944 * 2 1 4 4 C 1.52999 * 109.46980 * 175.00310 * 3 2 1 5 5 C 1.53003 * 109.46980 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46861 * 299.99596 * 5 4 3 7 7 N 1.46499 * 109.46872 * 180.02562 * 6 5 4 8 8 C 1.46502 * 120.00240 * 306.26523 * 7 6 5 9 9 C 1.34779 * 120.00025 * 126.26938 * 7 6 5 10 10 O 1.21278 * 119.99960 * 184.03252 * 9 7 6 11 11 C 1.50694 * 119.99878 * 4.02866 * 9 7 6 12 12 H 1.09005 * 109.47394 * 41.82546 * 11 9 7 13 13 C 1.53001 * 109.47609 * 281.82204 * 11 9 7 14 14 C 1.50702 * 109.47135 * 161.82129 * 11 9 7 15 15 H 1.08003 * 119.99654 * 0.02562 * 14 11 9 16 16 C 1.37880 * 120.00177 * 180.02562 * 14 11 9 17 17 N 1.31510 * 119.99744 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99910 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47112 * 90.00068 * 18 16 14 20 20 H 1.48499 * 109.47026 * 209.99867 * 18 16 14 21 21 H 1.48496 * 109.47277 * 329.99908 * 18 16 14 22 22 C 1.52997 * 109.47177 * 60.00073 * 6 5 4 23 23 C 1.52993 * 109.47496 * 299.99870 * 22 6 5 24 24 H 1.08998 * 109.47119 * 300.00026 * 1 2 3 25 25 H 1.08998 * 109.47515 * 60.00269 * 1 2 3 26 26 H 1.09001 * 109.47146 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47119 * 239.99974 * 2 1 3 28 28 H 1.08996 * 109.47030 * 119.99917 * 2 1 3 29 29 H 1.08992 * 109.47167 * 54.99476 * 3 2 1 30 30 H 1.09000 * 109.47273 * 59.99411 * 4 3 2 31 31 H 1.09001 * 109.46881 * 299.99764 * 4 3 2 32 32 H 1.09002 * 109.46858 * 59.99655 * 5 4 3 33 33 H 1.08999 * 109.46811 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47539 * 300.00246 * 6 5 4 35 35 H 1.09004 * 109.46755 * 92.91224 * 8 7 6 36 36 H 1.08996 * 109.47569 * 212.91168 * 8 7 6 37 37 H 1.09001 * 109.47005 * 332.91615 * 8 7 6 38 38 H 1.09001 * 109.47040 * 301.49050 * 13 11 9 39 39 H 1.09005 * 109.46671 * 61.48763 * 13 11 9 40 40 H 1.08996 * 109.47522 * 181.48667 * 13 11 9 41 41 H 0.97000 * 119.99740 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.47064 * 179.97438 * 22 6 5 43 43 H 1.09000 * 109.46904 * 60.00217 * 22 6 5 44 44 H 1.09000 * 109.47327 * 300.00088 * 23 22 6 45 45 H 1.08995 * 109.47820 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1256 5 6 4.0748 2.8869 0.1250 6 6 3.6700 3.5703 -1.1827 7 7 4.1589 4.9513 -1.1835 8 6 3.8286 5.8461 -0.0715 9 6 4.9125 5.3988 -2.2075 10 8 5.3781 6.5181 -2.1738 11 6 5.1766 4.5082 -3.3940 12 1 4.2612 3.9816 -3.6641 13 6 6.2632 3.4919 -3.0372 14 6 5.6360 5.3466 -4.5590 15 1 5.7279 6.4172 -4.4508 16 6 5.9389 4.7468 -5.7630 17 7 5.8265 3.4432 -5.8949 18 14 6.5091 5.7860 -7.2068 19 1 7.9890 5.9051 -7.1772 20 1 6.0897 5.1411 -8.4770 21 1 5.9017 7.1380 -7.1140 22 6 2.1452 3.5684 -1.3084 23 6 1.6352 2.1260 -1.3077 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6053 1.9816 0.8417 30 1 3.9994 0.9053 -0.7161 31 1 3.8531 0.9571 1.0570 32 1 3.6401 3.4263 0.9666 33 1 5.1611 2.8882 0.2141 34 1 4.1046 3.0309 -2.0243 35 1 4.6221 5.8063 0.6748 36 1 3.7298 6.8661 -0.4428 37 1 2.8882 5.5314 0.3810 38 1 7.1706 4.0188 -2.7418 39 1 5.9202 2.8680 -2.2118 40 1 6.4730 2.8648 -3.9037 41 1 6.0400 3.0212 -6.7418 42 1 1.8569 4.0557 -2.2398 43 1 1.7106 4.1079 -0.4669 44 1 2.0697 1.5865 -2.1493 45 1 0.5489 2.1246 -1.3968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596761759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:03 Heat of formation + Delta-G solvation = -86.724980 kcal Electronic energy + Delta-G solvation = -21855.735105 eV Core-core repulsion = 18871.103842 eV Total energy + Delta-G solvation = -2984.631262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24044 -39.45143 -36.51725 -35.85036 -33.46411 -32.63114 -31.69439 -29.28691 -27.97329 -27.26600 -24.74511 -23.89148 -23.29393 -21.67844 -20.59223 -19.97895 -18.36522 -17.80056 -17.08344 -16.39342 -16.16529 -15.77538 -15.49709 -14.99870 -14.84194 -14.64928 -14.39405 -14.17224 -13.90064 -13.70628 -13.40790 -13.14399 -12.98291 -12.91415 -12.66560 -12.65735 -12.50824 -12.41946 -12.27206 -12.05321 -11.99668 -11.96504 -11.53272 -11.26688 -11.08567 -11.04924 -10.90721 -10.60059 -10.25004 -9.49086 -8.16570 -6.27384 1.39116 1.39961 1.51545 1.89086 2.21277 2.45424 3.12395 3.73623 3.80478 3.86388 4.06426 4.16186 4.26000 4.42207 4.47794 4.51083 4.58101 4.61820 4.65344 4.66728 4.69366 4.79736 4.85767 4.88841 4.90462 4.96338 5.00556 5.11127 5.16804 5.21960 5.28693 5.29669 5.34678 5.39010 5.41603 5.45529 5.60542 5.67022 5.70208 5.77204 5.94483 6.18508 6.59063 6.79590 7.37530 7.49437 8.89296 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021980 B = 0.005291 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.566985 B = 5290.573991 C = 5972.342938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.081 4.081 4 C -0.109 4.109 5 C -0.118 4.118 6 C 0.129 3.871 7 N -0.616 5.616 8 C 0.086 3.914 9 C 0.515 3.485 10 O -0.591 6.591 11 C 0.032 3.968 12 H 0.037 0.963 13 C -0.118 4.118 14 C -0.531 4.531 15 H 0.043 0.957 16 C 0.022 3.978 17 N -0.909 5.909 18 Si 0.955 3.045 19 H -0.275 1.275 20 H -0.272 1.272 21 H -0.278 1.278 22 C -0.123 4.123 23 C -0.109 4.109 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.017 0.983 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.266 0.734 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.517 -8.777 14.388 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.099 4.099 4 C -0.147 4.147 5 C -0.156 4.156 6 C 0.026 3.974 7 N -0.349 5.349 8 C -0.056 4.056 9 C 0.306 3.694 10 O -0.472 6.472 11 C 0.011 3.989 12 H 0.055 0.945 13 C -0.176 4.176 14 C -0.570 4.570 15 H 0.062 0.938 16 C -0.177 4.177 17 N -0.548 5.548 18 Si 0.781 3.219 19 H -0.200 1.200 20 H -0.196 1.196 21 H -0.204 1.204 22 C -0.162 4.162 23 C -0.146 4.146 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.036 0.964 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.259 -8.323 14.286 19.458 hybrid contribution 0.568 0.794 -1.128 1.491 sum -9.691 -7.530 13.159 17.994 Atomic orbital electron populations 1.21818 0.95515 1.01748 1.01983 1.21544 0.96218 0.95693 1.02093 1.21174 0.94864 0.96361 0.97522 1.21557 0.95653 0.94830 1.02610 1.21817 1.00681 0.96865 0.96252 1.21494 0.95111 0.80637 1.00165 1.48144 1.51931 1.13449 1.21360 1.21609 1.01501 0.93748 0.88750 1.21681 0.76132 0.87360 0.84191 1.90483 1.52481 1.23136 1.81081 1.18722 0.96736 0.93558 0.89891 0.94520 1.21591 0.96989 0.98296 1.00741 1.21259 1.45854 0.93636 0.96228 0.93850 1.25580 0.95247 0.96254 1.00635 1.69936 1.49155 1.09501 1.26167 0.85601 0.78668 0.78796 0.78866 1.20047 1.19637 1.20360 1.21859 0.94010 0.98469 1.01833 1.21584 1.01220 0.93745 0.98097 0.92275 0.92851 0.92541 0.92637 0.91173 0.90108 0.92614 0.89958 0.90100 0.92715 0.90090 0.92691 0.93311 0.88297 0.96379 0.93380 0.90707 0.92487 0.93776 0.90230 0.92951 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 71.98 0.70 -1.37 16 2 C -0.12 -1.76 5.40 30.59 0.17 -1.60 16 3 C -0.08 -1.37 2.19 -10.79 -0.02 -1.39 16 4 C -0.11 -2.06 5.20 30.60 0.16 -1.90 16 5 C -0.12 -2.73 5.10 30.59 0.16 -2.58 16 6 C 0.13 3.89 1.79 44.99 0.08 3.97 16 7 N -0.62 -22.74 2.76 -822.60 -2.27 -25.01 16 8 C 0.09 2.55 9.24 127.77 1.18 3.73 16 9 C 0.52 25.31 6.85 87.65 0.60 25.91 16 10 O -0.59 -33.38 15.32 -3.02 -0.05 -33.43 16 11 C 0.03 1.69 1.77 -12.29 -0.02 1.67 16 12 H 0.04 1.99 7.07 -2.38 -0.02 1.97 16 13 C -0.12 -5.75 8.64 71.98 0.62 -5.13 16 14 C -0.53 -31.84 8.35 25.60 0.21 -31.62 16 15 H 0.04 2.78 6.90 -2.91 -0.02 2.76 16 16 C 0.02 1.27 5.30 84.66 0.45 1.72 16 17 N -0.91 -51.62 11.31 21.45 0.24 -51.38 16 18 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 19 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 22 C -0.12 -3.15 5.28 30.59 0.16 -2.98 16 23 C -0.11 -2.27 4.96 30.59 0.15 -2.12 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.77 6.56 -2.39 -0.02 0.75 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.58 7.42 -2.39 -0.02 1.57 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 2.92 4.35 -2.39 -0.01 2.91 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.64 7.57 -2.39 -0.02 1.62 16 37 H 0.10 2.14 6.63 -2.39 -0.02 2.12 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 1.97 6.35 -2.38 -0.02 1.95 16 40 H 0.07 3.93 6.03 -2.39 -0.01 3.92 16 41 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.71 6.95 -2.39 -0.02 1.69 16 44 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.08 1.44 6.56 -2.39 -0.02 1.42 16 Total: -1.00 -68.49 338.42 5.48 -63.01 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.94 Total: 12.82 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 4.59 Total: -13.70 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -2.03 Total: -76.39 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.05 Total: -33.43 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -68.49 5.48 -63.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596761759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.714 kcal (2) G-P(sol) polarization free energy of solvation -68.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds