Wall clock time and date at job start Mon Mar 30 2020 08:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53002 * 109.47278 * 295.00291 * 3 2 1 5 5 C 1.52996 * 109.46901 * 299.99760 * 4 3 2 6 6 C 1.53002 * 109.47130 * 299.99728 * 5 4 3 7 7 C 1.53005 * 109.47169 * 179.97438 * 6 5 4 8 8 N 1.46495 * 109.47072 * 65.00463 * 7 6 5 9 9 C 1.34779 * 120.00257 * 180.02562 * 8 7 6 10 10 O 1.21277 * 119.99522 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99921 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.46856 * 299.99684 * 11 9 8 13 13 C 1.52996 * 109.47289 * 59.99826 * 11 9 8 14 14 C 1.50702 * 109.46734 * 179.97438 * 11 9 8 15 15 H 1.08003 * 119.99947 * 359.97438 * 14 11 9 16 16 C 1.37877 * 119.99988 * 179.97438 * 14 11 9 17 17 N 1.31514 * 120.00013 * 180.02562 * 16 14 11 18 18 Si 1.86803 * 119.99706 * 0.02562 * 16 14 11 19 19 H 1.48499 * 109.47216 * 89.99944 * 18 16 14 20 20 H 1.48499 * 109.46863 * 209.99688 * 18 16 14 21 21 H 1.48497 * 109.47421 * 329.99766 * 18 16 14 22 22 C 1.53002 * 109.47007 * 60.00336 * 6 5 4 23 23 C 1.52998 * 109.47705 * 174.99884 * 3 2 1 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 30 30 H 1.08998 * 109.46891 * 59.99794 * 4 3 2 31 31 H 1.09004 * 109.47334 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47456 * 180.02562 * 5 4 3 33 33 H 1.08996 * 109.47297 * 59.99609 * 5 4 3 34 34 H 1.08996 * 109.47843 * 300.00163 * 6 5 4 35 35 H 1.09004 * 109.47115 * 185.00399 * 7 6 5 36 36 H 1.09000 * 109.47087 * 305.00203 * 7 6 5 37 37 H 0.97007 * 119.99729 * 359.97438 * 8 7 6 38 38 H 1.09000 * 109.47313 * 299.99495 * 13 11 9 39 39 H 1.08999 * 109.47287 * 60.00122 * 13 11 9 40 40 H 1.09001 * 109.46904 * 179.97438 * 13 11 9 41 41 H 0.97005 * 119.99609 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.47485 * 180.02562 * 22 6 5 43 43 H 1.08996 * 109.47464 * 60.00092 * 22 6 5 44 44 H 1.09000 * 109.47812 * 179.97438 * 23 3 2 45 45 H 1.09001 * 109.46974 * 300.00556 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6353 2.1265 -1.3073 5 6 2.2453 1.3699 -2.4889 6 6 3.7701 1.3717 -2.3632 7 6 4.3802 0.6145 -3.5446 8 7 4.0930 1.3352 -4.7873 9 6 4.5349 0.8508 -5.9648 10 8 5.1707 -0.1815 -5.9955 11 6 4.2389 1.5919 -7.2432 12 1 3.1599 1.6675 -7.3778 13 6 4.8434 2.9955 -7.1706 14 6 4.8399 0.8462 -8.4067 15 1 5.3823 -0.0723 -8.2373 16 6 4.6973 1.3364 -9.6875 17 7 5.2213 0.6854 -10.7029 18 14 3.7598 2.9254 -9.9802 19 1 4.6986 4.0739 -9.9116 20 1 3.1243 2.8851 -11.3218 21 1 2.7112 3.0804 -8.9403 22 6 4.1749 0.6876 -1.0559 23 6 3.5648 1.4443 0.1257 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6055 1.9814 0.8419 30 1 0.5490 2.1253 -1.3968 31 1 1.9983 3.1543 -1.3071 32 1 1.9574 1.8575 -3.4203 33 1 1.8820 0.3423 -2.4889 34 1 4.1336 2.3993 -2.3632 35 1 5.4592 0.5389 -3.4095 36 1 3.9495 -0.3854 -3.5966 37 1 3.5841 2.1607 -4.7627 38 1 4.4091 3.5352 -6.3291 39 1 5.9224 2.9200 -7.0360 40 1 4.6296 3.5314 -8.0955 41 1 5.1212 1.0306 -11.6039 42 1 5.2612 0.6893 -0.9661 43 1 3.8116 -0.3400 -1.0559 44 1 3.9283 2.4719 0.1253 45 1 3.8532 0.9569 1.0571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596881726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:20 Heat of formation + Delta-G solvation = -74.891308 kcal Electronic energy + Delta-G solvation = -21081.104146 eV Core-core repulsion = 18096.986030 eV Total energy + Delta-G solvation = -2984.118116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.88315 -38.64853 -35.13065 -33.77299 -32.76046 -31.25063 -30.87846 -29.76844 -25.75357 -25.09942 -23.66478 -22.91803 -22.22449 -20.94801 -19.33561 -18.54018 -16.71593 -16.31440 -15.85917 -15.30285 -15.18670 -14.77363 -14.37800 -14.23852 -13.89699 -13.66444 -13.25856 -12.91985 -12.76482 -12.52517 -12.28462 -12.26823 -12.09861 -11.98090 -11.60898 -11.48214 -11.25397 -11.13563 -10.93948 -10.81129 -10.57883 -10.30739 -10.23244 -10.14781 -10.07148 -9.60845 -9.06365 -8.64349 -8.55162 -8.44712 -6.02079 -4.01952 3.25256 3.32690 3.38239 3.65850 3.86114 4.40406 4.41886 4.47914 4.56268 4.89024 4.92753 4.97399 5.13421 5.23255 5.23846 5.27534 5.37072 5.37403 5.46302 5.50839 5.66315 5.70110 5.75714 5.79084 5.81250 5.89308 5.92197 5.98479 6.05207 6.09123 6.14621 6.14940 6.21339 6.27539 6.37000 6.40562 6.49143 6.76134 7.05368 7.20089 7.58871 8.19494 8.59744 9.14689 9.20979 9.57302 11.11037 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.003828 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.482119 B = 7312.311544 C = 7530.305519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.087 4.087 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.096 4.096 7 C 0.125 3.875 8 N -0.747 5.747 9 C 0.526 3.474 10 O -0.533 6.533 11 C -0.006 4.006 12 H 0.051 0.949 13 C -0.143 4.143 14 C -0.504 4.504 15 H 0.093 0.907 16 C 0.069 3.931 17 N -0.897 5.897 18 Si 0.885 3.115 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.268 1.268 22 C -0.113 4.113 23 C -0.113 4.113 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.393 0.607 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.264 0.736 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.385 4.805 23.227 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.106 4.106 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.115 4.115 7 C 0.001 3.999 8 N -0.401 5.401 9 C 0.315 3.685 10 O -0.408 6.408 11 C -0.027 4.027 12 H 0.069 0.931 13 C -0.201 4.201 14 C -0.543 4.543 15 H 0.111 0.889 16 C -0.132 4.132 17 N -0.535 5.535 18 Si 0.715 3.285 19 H -0.206 1.206 20 H -0.224 1.224 21 H -0.193 1.193 22 C -0.151 4.151 23 C -0.150 4.150 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.227 0.773 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.876 4.012 22.988 24.629 hybrid contribution -0.703 1.337 -0.275 1.536 sum -8.579 5.349 22.714 24.862 Atomic orbital electron populations 1.21824 0.96150 1.01438 1.01724 1.21682 0.95682 0.96582 1.02232 1.21148 0.95482 0.96216 0.97733 1.21590 1.00317 0.99012 0.94331 1.21647 0.94556 1.01284 0.98011 1.21385 0.95785 1.00089 0.94258 1.21248 0.99846 0.95666 0.83184 1.46253 1.59225 1.28223 1.06441 1.21241 0.77406 0.85200 0.84692 1.90576 1.38942 1.24348 1.86892 1.19307 0.98356 0.93077 0.91992 0.93134 1.22105 1.01596 0.97085 0.99309 1.20961 1.34723 1.10238 0.88343 0.88911 1.24990 0.95246 0.96986 0.95984 1.69890 1.45126 1.39351 0.99166 0.86902 0.80444 0.84234 0.76874 1.20555 1.22352 1.19287 1.21532 1.00369 0.99738 0.93479 1.21549 0.94948 1.00529 0.97985 0.92412 0.93106 0.93003 0.92370 0.91065 0.91628 0.91851 0.92146 0.91788 0.91363 0.90760 0.92182 0.92177 0.77286 0.94900 0.92411 0.93361 0.92612 0.91816 0.91410 0.92048 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.77 16 2 C -0.12 -0.96 4.69 -26.74 -0.13 -1.08 16 3 C -0.09 -0.66 2.66 -90.62 -0.24 -0.90 16 4 C -0.12 -0.93 5.21 -26.73 -0.14 -1.07 16 5 C -0.12 -1.13 4.80 -26.73 -0.13 -1.26 16 6 C -0.10 -0.98 2.23 -90.61 -0.20 -1.18 16 7 C 0.12 1.75 5.06 -4.04 -0.02 1.73 16 8 N -0.75 -12.24 5.18 -60.29 -0.31 -12.55 16 9 C 0.53 11.72 7.15 -10.98 -0.08 11.65 16 10 O -0.53 -14.11 15.46 5.56 0.09 -14.03 16 11 C -0.01 -0.13 2.23 -92.92 -0.21 -0.34 16 12 H 0.05 1.16 7.20 -51.93 -0.37 0.79 16 13 C -0.14 -2.98 8.57 37.16 0.32 -2.66 16 14 C -0.50 -14.84 8.95 -34.44 -0.31 -15.15 16 15 H 0.09 3.11 7.00 -52.48 -0.37 2.74 16 16 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 17 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 18 Si 0.89 21.55 24.37 -169.99 -4.14 17.40 16 19 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 20 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.27 -6.05 6.53 56.52 0.37 -5.68 16 22 C -0.11 -1.01 4.93 -26.73 -0.13 -1.14 16 23 C -0.11 -0.86 5.45 -26.73 -0.15 -1.01 16 24 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.61 4.83 -51.93 -0.25 0.36 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.65 7.18 -51.93 -0.37 0.28 16 33 H 0.07 0.69 6.32 -51.93 -0.33 0.36 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.39 5.40 7.07 -40.82 -0.29 5.12 16 38 H 0.03 0.54 7.56 -51.93 -0.39 0.14 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.61 6.54 -51.93 -0.34 0.27 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -33.07 332.65 -7.55 -40.62 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.82 Total: 2.08 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -1.15 Total: -11.24 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.46 Total: -39.85 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.09 Total: -14.03 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.40 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.07 -7.55 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596881726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.269 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds