Wall clock time and date at job start Mon Mar 30 2020 08:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53002 * 109.47278 * 295.00291 * 3 2 1 5 5 C 1.52996 * 109.46901 * 299.99760 * 4 3 2 6 6 C 1.53002 * 109.47130 * 299.99728 * 5 4 3 7 7 C 1.53005 * 109.47169 * 179.97438 * 6 5 4 8 8 N 1.46495 * 109.47072 * 65.00463 * 7 6 5 9 9 C 1.34779 * 120.00257 * 180.02562 * 8 7 6 10 10 O 1.21277 * 119.99522 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99921 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.46856 * 299.99684 * 11 9 8 13 13 C 1.52996 * 109.47289 * 59.99826 * 11 9 8 14 14 C 1.50702 * 109.46734 * 179.97438 * 11 9 8 15 15 H 1.08003 * 119.99947 * 359.97438 * 14 11 9 16 16 C 1.37877 * 119.99988 * 179.97438 * 14 11 9 17 17 N 1.31514 * 120.00013 * 180.02562 * 16 14 11 18 18 Si 1.86803 * 119.99706 * 0.02562 * 16 14 11 19 19 H 1.48499 * 109.47216 * 89.99944 * 18 16 14 20 20 H 1.48499 * 109.46863 * 209.99688 * 18 16 14 21 21 H 1.48497 * 109.47421 * 329.99766 * 18 16 14 22 22 C 1.53002 * 109.47007 * 60.00336 * 6 5 4 23 23 C 1.52998 * 109.47705 * 174.99884 * 3 2 1 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 30 30 H 1.08998 * 109.46891 * 59.99794 * 4 3 2 31 31 H 1.09004 * 109.47334 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47456 * 180.02562 * 5 4 3 33 33 H 1.08996 * 109.47297 * 59.99609 * 5 4 3 34 34 H 1.08996 * 109.47843 * 300.00163 * 6 5 4 35 35 H 1.09004 * 109.47115 * 185.00399 * 7 6 5 36 36 H 1.09000 * 109.47087 * 305.00203 * 7 6 5 37 37 H 0.97007 * 119.99729 * 359.97438 * 8 7 6 38 38 H 1.09000 * 109.47313 * 299.99495 * 13 11 9 39 39 H 1.08999 * 109.47287 * 60.00122 * 13 11 9 40 40 H 1.09001 * 109.46904 * 179.97438 * 13 11 9 41 41 H 0.97005 * 119.99609 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.47485 * 180.02562 * 22 6 5 43 43 H 1.08996 * 109.47464 * 60.00092 * 22 6 5 44 44 H 1.09000 * 109.47812 * 179.97438 * 23 3 2 45 45 H 1.09001 * 109.46974 * 300.00556 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6353 2.1265 -1.3073 5 6 2.2453 1.3699 -2.4889 6 6 3.7701 1.3717 -2.3632 7 6 4.3802 0.6145 -3.5446 8 7 4.0930 1.3352 -4.7873 9 6 4.5349 0.8508 -5.9648 10 8 5.1707 -0.1815 -5.9955 11 6 4.2389 1.5919 -7.2432 12 1 3.1599 1.6675 -7.3778 13 6 4.8434 2.9955 -7.1706 14 6 4.8399 0.8462 -8.4067 15 1 5.3823 -0.0723 -8.2373 16 6 4.6973 1.3364 -9.6875 17 7 5.2213 0.6854 -10.7029 18 14 3.7598 2.9254 -9.9802 19 1 4.6986 4.0739 -9.9116 20 1 3.1243 2.8851 -11.3218 21 1 2.7112 3.0804 -8.9403 22 6 4.1749 0.6876 -1.0559 23 6 3.5648 1.4443 0.1257 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6055 1.9814 0.8419 30 1 0.5490 2.1253 -1.3968 31 1 1.9983 3.1543 -1.3071 32 1 1.9574 1.8575 -3.4203 33 1 1.8820 0.3423 -2.4889 34 1 4.1336 2.3993 -2.3632 35 1 5.4592 0.5389 -3.4095 36 1 3.9495 -0.3854 -3.5966 37 1 3.5841 2.1607 -4.7627 38 1 4.4091 3.5352 -6.3291 39 1 5.9224 2.9200 -7.0360 40 1 4.6296 3.5314 -8.0955 41 1 5.1212 1.0306 -11.6039 42 1 5.2612 0.6893 -0.9661 43 1 3.8116 -0.3400 -1.0559 44 1 3.9283 2.4719 0.1253 45 1 3.8532 0.9569 1.0571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596881726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:19 Heat of formation + Delta-G solvation = -97.010299 kcal Electronic energy + Delta-G solvation = -21082.063297 eV Core-core repulsion = 18096.986030 eV Total energy + Delta-G solvation = -2985.077267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95307 -40.03615 -36.32728 -35.77983 -33.95734 -33.09517 -31.62380 -30.63407 -27.14485 -26.84711 -24.51158 -24.14262 -23.20331 -21.91430 -20.97858 -19.24150 -18.79880 -17.82886 -17.03810 -16.68454 -16.33643 -16.15392 -15.71621 -15.14552 -14.94191 -14.87694 -14.61699 -14.31876 -14.02871 -13.88646 -13.47903 -13.19807 -13.14979 -12.91793 -12.78101 -12.69473 -12.52538 -12.29665 -12.13201 -11.97903 -11.81532 -11.47783 -11.46121 -11.21831 -10.98009 -10.85462 -10.77387 -10.75280 -10.42245 -9.96103 -8.26677 -6.34734 1.33835 1.40741 1.52111 1.88340 2.34963 2.41818 3.06989 3.66636 3.79113 3.86009 4.12569 4.17347 4.21774 4.26565 4.43430 4.46979 4.51691 4.57306 4.61104 4.64610 4.69655 4.72201 4.77503 4.83350 4.89222 4.95072 5.02588 5.04721 5.12000 5.19974 5.22162 5.29528 5.32156 5.39016 5.45288 5.46847 5.53701 5.55156 5.58254 5.64026 5.71819 6.27508 6.69705 6.87157 7.26968 7.52860 8.91314 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.003828 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.482119 B = 7312.311544 C = 7530.305519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.085 4.085 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.083 4.083 7 C 0.124 3.876 8 N -0.719 5.719 9 C 0.524 3.476 10 O -0.589 6.589 11 C -0.009 4.009 12 H 0.069 0.931 13 C -0.138 4.138 14 C -0.523 4.523 15 H 0.027 0.973 16 C 0.005 3.995 17 N -0.954 5.954 18 Si 0.963 3.037 19 H -0.260 1.260 20 H -0.300 1.300 21 H -0.230 1.230 22 C -0.113 4.113 23 C -0.108 4.108 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.412 0.588 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.267 0.733 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.403 8.165 25.516 28.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.104 4.104 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.102 4.102 7 C 0.000 4.000 8 N -0.373 5.373 9 C 0.312 3.688 10 O -0.468 6.468 11 C -0.031 4.031 12 H 0.087 0.913 13 C -0.196 4.196 14 C -0.561 4.561 15 H 0.045 0.955 16 C -0.192 4.192 17 N -0.594 5.594 18 Si 0.787 3.213 19 H -0.185 1.185 20 H -0.228 1.228 21 H -0.153 1.153 22 C -0.151 4.151 23 C -0.146 4.146 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.249 0.751 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.922 7.410 25.350 28.213 hybrid contribution -0.025 0.143 -0.942 0.953 sum -9.948 7.552 24.408 27.418 Atomic orbital electron populations 1.21817 0.95864 1.01437 1.01954 1.21672 0.95945 0.96805 1.01775 1.21146 0.95384 0.95966 0.97858 1.21561 1.00500 0.99106 0.93641 1.21641 0.93923 1.01116 0.98812 1.21312 0.96046 1.00048 0.92790 1.21406 0.99526 0.95610 0.83442 1.45938 1.57475 1.28402 1.05486 1.21088 0.77192 0.84451 0.86041 1.90564 1.41776 1.26746 1.87755 1.19265 0.98906 0.94386 0.90529 0.91305 1.22008 1.01048 0.95047 1.01453 1.21126 1.34737 1.08984 0.91297 0.95474 1.26075 0.96261 1.01738 0.95087 1.70089 1.47295 1.42107 0.99953 0.85665 0.79768 0.78447 0.77417 1.18547 1.22762 1.15253 1.21529 1.00495 0.99652 0.93407 1.21526 0.94894 1.00688 0.97463 0.92680 0.92316 0.93206 0.92076 0.92318 0.90594 0.91411 0.91328 0.92008 0.92282 0.89511 0.93275 0.93570 0.75085 0.89508 0.93648 0.93572 0.92401 0.91867 0.91935 0.91370 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 71.98 0.70 -1.26 16 2 C -0.12 -1.68 4.69 30.59 0.14 -1.53 16 3 C -0.09 -1.04 2.66 -10.80 -0.03 -1.07 16 4 C -0.11 -1.44 5.21 30.59 0.16 -1.28 16 5 C -0.12 -1.96 4.80 30.59 0.15 -1.82 16 6 C -0.08 -1.50 2.23 -10.79 -0.02 -1.52 16 7 C 0.12 3.38 5.06 86.38 0.44 3.81 16 8 N -0.72 -22.32 5.18 -463.06 -2.40 -24.71 16 9 C 0.52 23.38 7.15 87.66 0.63 24.01 16 10 O -0.59 -32.72 15.46 -3.02 -0.05 -32.76 16 11 C -0.01 -0.43 2.23 -12.29 -0.03 -0.46 16 12 H 0.07 2.96 7.20 -2.39 -0.02 2.94 16 13 C -0.14 -5.28 8.57 71.98 0.62 -4.66 16 14 C -0.52 -31.92 8.95 25.60 0.23 -31.69 16 15 H 0.03 1.96 7.00 -2.91 -0.02 1.94 16 16 C 0.00 0.27 5.45 84.65 0.46 0.73 16 17 N -0.95 -62.14 13.96 21.45 0.30 -61.84 16 18 Si 0.96 43.38 24.37 68.60 1.67 45.06 16 19 H -0.26 -10.91 6.87 99.48 0.68 -10.23 16 20 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.23 -8.89 6.53 99.48 0.65 -8.24 16 22 C -0.11 -1.79 4.93 30.60 0.15 -1.64 16 23 C -0.11 -1.35 5.45 30.60 0.17 -1.18 16 24 H 0.05 0.72 6.57 -2.39 -0.02 0.71 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.94 4.83 -2.39 -0.01 0.93 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.85 6.56 -2.39 -0.02 0.84 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.06 1.06 7.18 -2.39 -0.02 1.04 16 33 H 0.06 1.11 6.32 -2.39 -0.02 1.10 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.41 9.76 7.07 -92.70 -0.66 9.11 16 38 H 0.09 2.37 7.56 -2.39 -0.02 2.35 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.05 1.79 3.27 -2.39 -0.01 1.78 16 41 H 0.27 16.07 8.31 -92.70 -0.77 15.30 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.07 6.54 -2.39 -0.02 1.05 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -77.46 332.65 3.51 -73.96 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.23 Total: 19.87 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 3.75 Total: -19.56 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -2.10 Total: -86.56 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.05 Total: -32.76 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.67 Total: 45.06 kcal Total: -77.46 3.51 -73.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596881726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.055 kcal (2) G-P(sol) polarization free energy of solvation -77.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds