Wall clock time and date at job start Mon Mar 30 2020 08:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47046 * 2 1 4 4 C 1.53005 * 109.46913 * 294.99923 * 3 2 1 5 5 C 1.53002 * 109.47213 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46963 * 60.00144 * 5 4 3 7 7 C 1.52998 * 109.47445 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.46977 * 295.00254 * 7 6 5 9 9 C 1.34777 * 119.99775 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00213 * 359.97438 * 9 8 7 11 11 C 1.50707 * 119.99876 * 179.97438 * 9 8 7 12 12 H 1.08998 * 109.47014 * 59.99988 * 11 9 8 13 13 C 1.53001 * 109.47018 * 300.00112 * 11 9 8 14 14 C 1.50692 * 109.47136 * 180.02562 * 11 9 8 15 15 H 1.08004 * 120.00136 * 35.10560 * 14 11 9 16 16 C 1.37879 * 120.00153 * 215.10813 * 14 11 9 17 17 N 1.31514 * 119.99955 * 184.90949 * 16 14 11 18 18 Si 1.86794 * 119.99705 * 4.90315 * 16 14 11 19 19 H 1.48500 * 109.46992 * 84.82725 * 18 16 14 20 20 H 1.48502 * 109.47156 * 204.82347 * 18 16 14 21 21 H 1.48495 * 109.47568 * 324.82688 * 18 16 14 22 22 C 1.53005 * 109.47038 * 299.99963 * 6 5 4 23 23 C 1.53002 * 109.47213 * 60.00190 * 22 6 5 24 24 H 1.09002 * 109.47360 * 299.99901 * 1 2 3 25 25 H 1.09002 * 109.47127 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47349 * 60.00682 * 1 2 3 27 27 H 1.09005 * 109.47662 * 119.99329 * 2 1 3 28 28 H 1.08993 * 109.47836 * 239.99826 * 2 1 3 29 29 H 1.09003 * 109.47427 * 54.99882 * 3 2 1 30 30 H 1.09003 * 109.47040 * 300.00196 * 4 3 2 31 31 H 1.08995 * 109.46877 * 60.00135 * 4 3 2 32 32 H 1.08993 * 109.47459 * 300.00107 * 5 4 3 33 33 H 1.08999 * 109.47192 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.47006 * 59.99740 * 6 5 4 35 35 H 1.09000 * 109.46776 * 54.99895 * 7 6 5 36 36 H 1.08998 * 109.47500 * 175.00019 * 7 6 5 37 37 H 0.97005 * 120.00223 * 359.97438 * 8 7 6 38 38 H 1.09000 * 109.46985 * 55.07063 * 13 11 9 39 39 H 1.08994 * 109.46957 * 175.07224 * 13 11 9 40 40 H 1.09002 * 109.47038 * 295.07477 * 13 11 9 41 41 H 0.97004 * 120.00026 * 179.97438 * 17 16 14 42 42 H 1.08993 * 109.46996 * 299.99799 * 22 6 5 43 43 H 1.09004 * 109.47138 * 179.97438 * 22 6 5 44 44 H 1.08999 * 109.47192 * 180.02562 * 23 22 6 45 45 H 1.09003 * 109.47471 * 59.99831 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 2.1446 3.5693 -1.3072 6 6 3.6694 3.5717 -1.1812 7 6 4.1790 5.0143 -1.1817 8 7 3.8963 5.6316 -2.4798 9 6 4.2578 6.9092 -2.7115 10 8 4.8166 7.5479 -1.8451 11 6 3.9676 7.5440 -4.0471 12 1 2.8924 7.5379 -4.2263 13 6 4.6732 6.7542 -5.1513 14 6 4.4693 8.9650 -4.0475 15 1 5.3723 9.2190 -3.5121 16 6 3.7758 9.9408 -4.7314 17 7 4.2635 11.1595 -4.8128 18 14 2.1435 9.5319 -5.5423 19 1 1.0511 9.6507 -4.5435 20 1 1.8961 10.4767 -6.6610 21 1 2.1855 8.1434 -6.0672 22 6 4.0742 2.8877 0.1262 23 6 3.5648 1.4449 0.1260 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6053 1.9816 0.8418 30 1 2.0698 1.5874 -2.1492 31 1 0.5489 2.1252 -1.3969 32 1 1.7096 4.1081 -0.4655 33 1 1.8566 4.0564 -2.2388 34 1 4.1044 3.0328 -2.0230 35 1 3.6769 5.5771 -0.3947 36 1 5.2542 5.0200 -1.0030 37 1 3.4490 5.1209 -3.1727 38 1 4.3763 5.7069 -5.0953 39 1 4.3934 7.1597 -6.1235 40 1 5.7526 6.8333 -5.0215 41 1 3.7758 11.8460 -5.2943 42 1 3.6392 3.4265 0.9679 43 1 5.1605 2.8890 0.2157 44 1 3.8528 0.9578 1.0576 45 1 3.9997 0.9061 -0.7158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596881727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:22 Heat of formation + Delta-G solvation = -87.175089 kcal Electronic energy + Delta-G solvation = -20813.115375 eV Core-core repulsion = 17828.464594 eV Total energy + Delta-G solvation = -2984.650781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.60368 -38.50765 -35.35194 -33.59749 -33.06190 -31.27116 -30.89493 -29.59577 -25.80470 -25.21390 -23.33064 -22.81372 -21.67566 -20.49363 -20.01824 -19.10346 -17.00650 -16.19282 -15.64547 -15.18521 -15.02552 -14.66354 -14.17119 -14.14819 -13.94518 -13.66440 -13.36333 -12.94381 -12.76853 -12.55106 -12.33678 -12.18098 -12.01781 -11.78668 -11.42678 -11.29526 -11.21834 -11.18517 -11.06549 -10.88067 -10.73296 -10.57349 -10.26984 -10.16566 -10.05236 -9.78115 -9.13595 -8.63811 -8.49762 -8.39943 -6.03624 -4.02470 3.26432 3.32675 3.35389 3.71933 3.90107 4.38684 4.40922 4.48158 4.55078 4.79882 4.91366 4.96888 5.13558 5.23066 5.26990 5.30054 5.33761 5.37041 5.39728 5.48634 5.66899 5.70302 5.73064 5.79629 5.84869 5.87527 5.94156 6.01005 6.04425 6.06129 6.14124 6.18716 6.21455 6.27452 6.38238 6.44273 6.56897 6.86982 7.10286 7.21776 7.59927 8.23599 8.59179 9.12367 9.24331 9.56347 11.09868 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030257 B = 0.003756 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.195722 B = 7452.649715 C = 7986.841627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.097 4.097 7 C 0.124 3.876 8 N -0.748 5.748 9 C 0.517 3.483 10 O -0.532 6.532 11 C -0.005 4.005 12 H 0.053 0.947 13 C -0.133 4.133 14 C -0.494 4.494 15 H 0.085 0.915 16 C 0.070 3.930 17 N -0.896 5.896 18 Si 0.872 3.128 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.112 4.112 23 C -0.112 4.112 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.393 0.607 38 H 0.025 0.975 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.264 0.736 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 -23.766 7.259 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.107 4.107 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.116 4.116 7 C 0.000 4.000 8 N -0.403 5.403 9 C 0.305 3.695 10 O -0.406 6.406 11 C -0.027 4.027 12 H 0.071 0.929 13 C -0.191 4.191 14 C -0.532 4.532 15 H 0.103 0.897 16 C -0.131 4.131 17 N -0.534 5.534 18 Si 0.699 3.301 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.150 4.150 23 C -0.150 4.150 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.226 0.774 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.183 -23.066 7.829 25.131 hybrid contribution -1.149 -0.326 -0.761 1.416 sum -7.332 -23.391 7.069 25.513 Atomic orbital electron populations 1.21827 0.96022 1.01340 1.02001 1.21570 0.95827 0.96570 1.01750 1.21217 0.95571 0.95582 0.98367 1.21634 1.00567 0.95709 0.97250 1.21613 0.94884 0.96483 1.02394 1.21395 0.96081 0.95380 0.98713 1.21243 1.00148 0.91809 0.86826 1.46351 1.63871 1.14491 1.15625 1.21730 0.76822 0.79711 0.91198 1.90577 1.40864 1.62146 1.47016 1.19339 0.97559 0.97337 0.88468 0.92913 1.21942 1.01144 0.96404 0.99606 1.20762 1.11924 0.88855 1.31637 0.89664 1.25037 0.97377 0.94931 0.95791 1.69890 1.38723 1.02311 1.42499 0.86949 0.85056 0.78508 0.79550 1.20154 1.21289 1.18964 1.21500 1.00795 0.95480 0.97184 1.21569 0.95132 0.96629 1.01633 0.92844 0.93070 0.92401 0.92238 0.92121 0.91263 0.92070 0.91872 0.91770 0.91692 0.90735 0.92218 0.92238 0.77375 0.95552 0.92782 0.92948 0.92591 0.91701 0.91699 0.92120 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16 2 C -0.12 -0.82 5.40 -26.73 -0.14 -0.97 16 3 C -0.09 -0.69 2.19 -90.62 -0.20 -0.88 16 4 C -0.11 -0.95 4.96 -26.73 -0.13 -1.08 16 5 C -0.12 -1.15 5.08 -26.73 -0.14 -1.29 16 6 C -0.10 -1.01 2.22 -90.62 -0.20 -1.21 16 7 C 0.12 1.78 5.07 -4.04 -0.02 1.76 16 8 N -0.75 -12.51 5.14 -60.29 -0.31 -12.82 16 9 C 0.52 11.66 7.15 -10.98 -0.08 11.58 16 10 O -0.53 -14.28 15.77 5.56 0.09 -14.19 16 11 C -0.01 -0.12 2.30 -92.92 -0.21 -0.34 16 12 H 0.05 1.21 5.29 -51.93 -0.27 0.93 16 13 C -0.13 -2.68 9.12 37.16 0.34 -2.34 16 14 C -0.49 -14.42 8.36 -34.44 -0.29 -14.71 16 15 H 0.09 2.83 7.61 -52.48 -0.40 2.43 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 18 Si 0.87 21.16 26.99 -169.99 -4.59 16.57 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.26 -5.91 6.82 56.52 0.39 -5.52 16 22 C -0.11 -1.02 5.21 -26.73 -0.14 -1.16 16 23 C -0.11 -0.88 5.21 -26.73 -0.14 -1.02 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.68 7.18 -51.93 -0.37 0.30 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.39 5.50 7.02 -40.82 -0.29 5.21 16 38 H 0.03 0.42 7.43 -51.93 -0.39 0.04 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -33.02 346.52 -8.22 -41.24 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.32 Total: 1.51 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -1.09 Total: -10.35 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.46 Total: -40.00 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.59 Total: 16.57 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.02 -8.22 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596881727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.936 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds