Wall clock time and date at job start Mon Mar 30 2020 08:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47046 * 2 1 4 4 C 1.53005 * 109.46913 * 294.99923 * 3 2 1 5 5 C 1.53002 * 109.47213 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46963 * 60.00144 * 5 4 3 7 7 C 1.52998 * 109.47445 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.46977 * 295.00254 * 7 6 5 9 9 C 1.34777 * 119.99775 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00213 * 359.97438 * 9 8 7 11 11 C 1.50707 * 119.99876 * 179.97438 * 9 8 7 12 12 H 1.08998 * 109.47014 * 59.99988 * 11 9 8 13 13 C 1.53001 * 109.47018 * 300.00112 * 11 9 8 14 14 C 1.50692 * 109.47136 * 180.02562 * 11 9 8 15 15 H 1.08004 * 120.00136 * 35.10560 * 14 11 9 16 16 C 1.37879 * 120.00153 * 215.10813 * 14 11 9 17 17 N 1.31514 * 119.99955 * 184.90949 * 16 14 11 18 18 Si 1.86794 * 119.99705 * 4.90315 * 16 14 11 19 19 H 1.48500 * 109.46992 * 84.82725 * 18 16 14 20 20 H 1.48502 * 109.47156 * 204.82347 * 18 16 14 21 21 H 1.48495 * 109.47568 * 324.82688 * 18 16 14 22 22 C 1.53005 * 109.47038 * 299.99963 * 6 5 4 23 23 C 1.53002 * 109.47213 * 60.00190 * 22 6 5 24 24 H 1.09002 * 109.47360 * 299.99901 * 1 2 3 25 25 H 1.09002 * 109.47127 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47349 * 60.00682 * 1 2 3 27 27 H 1.09005 * 109.47662 * 119.99329 * 2 1 3 28 28 H 1.08993 * 109.47836 * 239.99826 * 2 1 3 29 29 H 1.09003 * 109.47427 * 54.99882 * 3 2 1 30 30 H 1.09003 * 109.47040 * 300.00196 * 4 3 2 31 31 H 1.08995 * 109.46877 * 60.00135 * 4 3 2 32 32 H 1.08993 * 109.47459 * 300.00107 * 5 4 3 33 33 H 1.08999 * 109.47192 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.47006 * 59.99740 * 6 5 4 35 35 H 1.09000 * 109.46776 * 54.99895 * 7 6 5 36 36 H 1.08998 * 109.47500 * 175.00019 * 7 6 5 37 37 H 0.97005 * 120.00223 * 359.97438 * 8 7 6 38 38 H 1.09000 * 109.46985 * 55.07063 * 13 11 9 39 39 H 1.08994 * 109.46957 * 175.07224 * 13 11 9 40 40 H 1.09002 * 109.47038 * 295.07477 * 13 11 9 41 41 H 0.97004 * 120.00026 * 179.97438 * 17 16 14 42 42 H 1.08993 * 109.46996 * 299.99799 * 22 6 5 43 43 H 1.09004 * 109.47138 * 179.97438 * 22 6 5 44 44 H 1.08999 * 109.47192 * 180.02562 * 23 22 6 45 45 H 1.09003 * 109.47471 * 59.99831 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 2.1446 3.5693 -1.3072 6 6 3.6694 3.5717 -1.1812 7 6 4.1790 5.0143 -1.1817 8 7 3.8963 5.6316 -2.4798 9 6 4.2578 6.9092 -2.7115 10 8 4.8166 7.5479 -1.8451 11 6 3.9676 7.5440 -4.0471 12 1 2.8924 7.5379 -4.2263 13 6 4.6732 6.7542 -5.1513 14 6 4.4693 8.9650 -4.0475 15 1 5.3723 9.2190 -3.5121 16 6 3.7758 9.9408 -4.7314 17 7 4.2635 11.1595 -4.8128 18 14 2.1435 9.5319 -5.5423 19 1 1.0511 9.6507 -4.5435 20 1 1.8961 10.4767 -6.6610 21 1 2.1855 8.1434 -6.0672 22 6 4.0742 2.8877 0.1262 23 6 3.5648 1.4449 0.1260 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6053 1.9816 0.8418 30 1 2.0698 1.5874 -2.1492 31 1 0.5489 2.1252 -1.3969 32 1 1.7096 4.1081 -0.4655 33 1 1.8566 4.0564 -2.2388 34 1 4.1044 3.0328 -2.0230 35 1 3.6769 5.5771 -0.3947 36 1 5.2542 5.0200 -1.0030 37 1 3.4490 5.1209 -3.1727 38 1 4.3763 5.7069 -5.0953 39 1 4.3934 7.1597 -6.1235 40 1 5.7526 6.8333 -5.0215 41 1 3.7758 11.8460 -5.2943 42 1 3.6392 3.4265 0.9679 43 1 5.1605 2.8890 0.2157 44 1 3.8528 0.9578 1.0576 45 1 3.9997 0.9061 -0.7158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596881727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:22 Heat of formation + Delta-G solvation = -108.264598 kcal Electronic energy + Delta-G solvation = -20814.029885 eV Core-core repulsion = 17828.464594 eV Total energy + Delta-G solvation = -2985.565290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.82796 -39.78036 -36.43324 -35.62376 -34.27346 -33.18137 -31.62045 -30.49930 -27.26427 -26.80032 -24.33498 -23.90348 -22.80567 -21.37398 -20.92652 -20.50002 -19.12768 -17.80104 -16.93659 -16.47545 -16.09671 -15.99618 -15.52231 -15.07046 -14.95791 -14.75391 -14.51714 -14.36681 -14.03659 -13.84404 -13.57899 -13.27198 -13.05790 -12.93817 -12.88814 -12.59726 -12.39405 -12.18496 -12.06314 -11.91616 -11.87773 -11.74642 -11.56166 -11.27292 -11.24694 -10.91707 -10.75907 -10.74507 -10.39542 -9.94037 -8.27148 -6.33765 1.35662 1.39441 1.49559 1.92108 2.35907 2.42830 3.10137 3.65849 3.78769 3.83526 4.06654 4.20541 4.21979 4.30865 4.41684 4.47332 4.55503 4.60089 4.66512 4.68224 4.68828 4.74207 4.74902 4.84206 4.91827 4.94099 5.04476 5.12808 5.15283 5.21307 5.22318 5.31161 5.31595 5.36567 5.41463 5.46763 5.51441 5.59396 5.60101 5.63791 5.70175 6.26519 6.67863 6.87784 7.27815 7.55632 8.91153 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030257 B = 0.003756 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.195722 B = 7452.649715 C = 7986.841627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.088 4.088 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.084 4.084 7 C 0.123 3.877 8 N -0.722 5.722 9 C 0.515 3.485 10 O -0.589 6.589 11 C -0.009 4.009 12 H 0.072 0.928 13 C -0.127 4.127 14 C -0.508 4.508 15 H 0.020 0.980 16 C 0.003 3.997 17 N -0.954 5.954 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.222 1.222 22 C -0.111 4.111 23 C -0.107 4.107 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.411 0.589 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.267 0.733 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.824 -27.378 6.140 29.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.106 4.106 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.103 4.103 7 C -0.001 4.001 8 N -0.376 5.376 9 C 0.304 3.696 10 O -0.468 6.468 11 C -0.031 4.031 12 H 0.090 0.910 13 C -0.185 4.185 14 C -0.547 4.547 15 H 0.038 0.962 16 C -0.193 4.193 17 N -0.593 5.593 18 Si 0.770 3.230 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.144 1.144 22 C -0.149 4.149 23 C -0.145 4.145 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.248 0.752 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.440 -26.767 6.701 28.855 hybrid contribution -0.353 0.808 -0.309 0.934 sum -8.793 -25.959 6.392 28.143 Atomic orbital electron populations 1.21832 0.95913 1.01693 1.01821 1.21540 0.95896 0.95855 1.02127 1.21200 0.95456 0.96111 0.97854 1.21597 1.00846 0.94445 0.97765 1.21615 0.94183 0.97701 1.01906 1.21324 0.96534 0.92405 1.00012 1.21399 0.99635 0.94056 0.84981 1.46018 1.61989 1.12562 1.17009 1.21536 0.76563 0.81259 0.90285 1.90563 1.43734 1.64029 1.48451 1.19332 0.98674 0.94669 0.90409 0.91032 1.21826 0.99824 0.98801 0.98001 1.20911 1.10211 0.92579 1.30954 0.96169 1.26124 1.02259 0.94334 0.96573 1.70083 1.41085 1.03999 1.44174 0.85732 0.78305 0.80571 0.78349 1.19485 1.21037 1.14398 1.21499 1.00912 0.96358 0.96158 1.21537 0.95132 0.95437 1.02366 0.93118 0.92496 0.92498 0.91870 0.91742 0.91956 0.91336 0.91438 0.92735 0.91830 0.89449 0.93631 0.93277 0.75153 0.90523 0.92402 0.94515 0.92408 0.92250 0.91641 0.91325 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.67 71.98 0.70 -0.99 16 2 C -0.12 -1.28 5.40 30.59 0.17 -1.11 16 3 C -0.09 -1.12 2.19 -10.79 -0.02 -1.14 16 4 C -0.11 -1.48 4.96 30.60 0.15 -1.33 16 5 C -0.12 -2.01 5.08 30.60 0.16 -1.85 16 6 C -0.08 -1.55 2.22 -10.79 -0.02 -1.57 16 7 C 0.12 3.41 5.07 86.38 0.44 3.85 16 8 N -0.72 -22.74 5.14 -463.06 -2.38 -25.13 16 9 C 0.52 23.16 7.15 87.66 0.63 23.79 16 10 O -0.59 -32.94 15.77 -3.04 -0.05 -32.99 16 11 C -0.01 -0.42 2.30 -12.29 -0.03 -0.45 16 12 H 0.07 3.03 5.29 -2.39 -0.01 3.02 16 13 C -0.13 -4.77 9.12 71.98 0.66 -4.12 16 14 C -0.51 -30.77 8.36 25.60 0.21 -30.56 16 15 H 0.02 1.43 7.61 -2.91 -0.02 1.41 16 16 C 0.00 0.19 5.47 84.66 0.46 0.66 16 17 N -0.95 -61.90 13.96 21.45 0.30 -61.60 16 18 Si 0.95 42.77 26.99 68.60 1.85 44.62 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.22 -8.42 6.82 99.48 0.68 -7.74 16 22 C -0.11 -1.81 5.21 30.60 0.16 -1.65 16 23 C -0.11 -1.38 5.21 30.60 0.16 -1.22 16 24 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.62 6.57 -2.39 -0.02 0.61 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.88 6.56 -2.39 -0.02 0.87 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.11 7.18 -2.39 -0.02 1.10 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.41 9.93 7.02 -92.70 -0.65 9.28 16 38 H 0.08 2.11 7.43 -2.39 -0.02 2.09 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 42 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -77.14 346.52 3.79 -73.35 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.26 Total: 19.42 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 3.81 Total: -17.69 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.08 Total: -86.72 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.05 Total: -32.99 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.85 Total: 44.62 kcal Total: -77.14 3.79 -73.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596881727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.910 kcal (2) G-P(sol) polarization free energy of solvation -77.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds