Wall clock time and date at job start Mon Mar 30 2020 07:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46804 * 2 1 4 4 C 1.53004 * 109.47222 * 240.00345 * 2 1 3 5 5 C 1.50703 * 109.46935 * 59.99473 * 4 2 1 6 6 H 1.07996 * 120.00189 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99549 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00518 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99667 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47167 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46984 * 120.00233 * 9 7 5 12 12 H 1.48498 * 109.46969 * 239.99780 * 9 7 5 13 13 C 1.53000 * 109.47461 * 120.00023 * 2 1 3 14 14 N 1.46893 * 109.47120 * 289.55255 * 13 2 1 15 15 C 1.48508 * 111.00290 * 57.86209 * 14 13 2 16 16 C 1.54268 * 104.74248 * 159.33334 * 15 14 13 17 17 H 1.08998 * 113.16793 * 99.35421 * 16 15 14 18 18 C 1.54389 * 108.77412 * 225.41000 * 16 15 14 19 19 O 1.44383 * 104.91926 * 87.14233 * 18 16 15 20 20 C 1.44388 * 105.25571 * 40.75433 * 19 18 16 21 21 C 1.54387 * 104.91951 * 319.24459 * 20 19 18 22 22 C 1.53001 * 112.68261 * 147.19904 * 21 20 19 23 23 C 1.48512 * 111.00120 * 173.25512 * 14 13 2 24 24 H 1.09001 * 109.47483 * 331.54799 * 1 2 3 25 25 H 1.08999 * 109.47368 * 91.55721 * 1 2 3 26 26 H 1.09005 * 109.46915 * 211.55395 * 1 2 3 27 27 H 1.09000 * 109.47105 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47289 * 300.00191 * 3 2 1 29 29 H 1.09000 * 109.47243 * 60.00363 * 3 2 1 30 30 H 1.09000 * 109.47309 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.46797 * 299.99685 * 4 2 1 32 32 H 0.97000 * 120.00679 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.46986 * 169.54503 * 13 2 1 34 34 H 1.09004 * 109.46883 * 49.55309 * 13 2 1 35 35 H 1.09006 * 110.37812 * 278.14664 * 15 14 13 36 36 H 1.08992 * 110.38353 * 40.51829 * 15 14 13 37 37 H 1.08998 * 110.34854 * 328.27665 * 18 16 15 38 38 H 1.09008 * 110.34877 * 205.99995 * 18 16 15 39 39 H 1.08997 * 110.34567 * 200.38483 * 20 19 18 40 40 H 1.08997 * 110.34584 * 78.10235 * 20 19 18 41 41 H 1.08996 * 109.47022 * 182.51961 * 22 21 20 42 42 H 1.09001 * 109.46651 * 302.52233 * 22 21 20 43 43 H 1.09003 * 109.46693 * 62.51909 * 22 21 20 44 44 H 1.08999 * 110.37976 * 319.48149 * 23 14 13 45 45 H 1.08997 * 110.38135 * 81.84940 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5375 -0.0107 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6255 -1.5518 -3.8528 9 14 1.2480 0.3990 -5.2572 10 1 0.4234 1.5658 -4.8530 11 1 2.4033 0.8648 -6.0656 12 1 0.4223 -0.5339 -6.0654 13 6 2.0400 -0.7212 1.2492 14 7 1.7663 0.1009 2.4354 15 6 0.3148 0.3888 2.5600 16 6 0.1144 0.7616 4.0435 17 1 0.0696 1.8373 4.2131 18 6 -1.1311 0.0221 4.5778 19 8 -0.6395 -1.2607 5.0224 20 6 0.6170 -0.9803 5.6760 21 6 1.2987 0.0825 4.7875 22 6 2.1533 1.0640 5.5920 23 6 2.1001 -0.6349 3.6815 24 1 -0.3634 0.9035 0.4896 25 1 -0.3634 -0.0279 -1.0273 26 1 -0.3633 -0.8758 0.5378 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7208 -1.2496 31 1 1.6767 -1.7489 -1.2493 32 1 2.8599 -1.8832 -4.7337 33 1 3.1139 -0.8855 1.1608 34 1 1.5326 -1.6810 1.3473 35 1 0.0371 1.2246 1.9177 36 1 -0.2706 -0.4954 2.3083 37 1 -1.8649 -0.1081 3.7824 38 1 -1.5685 0.5703 5.4122 39 1 1.2280 -1.8816 5.7253 40 1 0.4437 -0.5834 6.6762 41 1 2.5721 1.8149 4.9220 42 1 1.5341 1.5529 6.3441 43 1 2.9625 0.5233 6.0830 44 1 1.7890 -1.6765 3.6021 45 1 3.1689 -0.5713 3.8851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597212592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:40 Heat of formation + Delta-G solvation = -43.557076 kcal Electronic energy + Delta-G solvation = -22020.421451 eV Core-core repulsion = 19037.662090 eV Total energy + Delta-G solvation = -2982.759362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83249 -37.92856 -35.47484 -32.93815 -31.81032 -31.12744 -27.36587 -27.07911 -26.42844 -25.98403 -25.47824 -23.39035 -21.83172 -20.87712 -19.42557 -17.86511 -16.38922 -16.12791 -15.71076 -15.43134 -15.25165 -14.64334 -14.39356 -13.96288 -13.43855 -13.23865 -13.08614 -12.94674 -12.63170 -12.37325 -12.03779 -12.00305 -11.69994 -11.33280 -11.20729 -10.95266 -10.87719 -10.78440 -10.75459 -10.69931 -10.59292 -10.33448 -10.05352 -9.89330 -9.81325 -9.62096 -8.96174 -8.79153 -8.30563 -8.09894 -5.94973 -3.94904 3.33219 3.41104 3.44511 3.83007 4.20913 4.29066 4.47255 4.51852 4.85284 4.91668 5.03541 5.12717 5.31197 5.39754 5.40850 5.46945 5.51148 5.60488 5.62075 5.69494 5.73112 5.83697 5.88292 5.91256 5.96080 6.08384 6.13098 6.18069 6.30461 6.39624 6.55985 6.64764 6.67615 6.75283 6.90121 7.08783 7.26101 7.27911 7.34971 7.48035 7.73232 7.88283 8.05222 8.49733 9.10694 9.67691 11.16730 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037817 B = 0.004318 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.232771 B = 6482.616829 C = 6606.059323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.114 4.114 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.055 3.945 14 N -0.500 5.500 15 C 0.033 3.967 16 C -0.123 4.123 17 H 0.097 0.903 18 C 0.048 3.952 19 O -0.373 6.373 20 C 0.052 3.948 21 C -0.095 4.095 22 C -0.124 4.124 23 C 0.042 3.958 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.258 0.742 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 4.249 19.274 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.057 4.057 3 C -0.172 4.172 4 C -0.003 4.003 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.073 4.073 14 N -0.223 5.223 15 C -0.094 4.094 16 C -0.143 4.143 17 H 0.115 0.885 18 C -0.029 4.029 19 O -0.292 6.292 20 C -0.025 4.025 21 C -0.096 4.096 22 C -0.181 4.181 23 C -0.086 4.086 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.529 4.397 19.034 19.851 hybrid contribution -0.574 -0.308 -0.888 1.102 sum -4.103 4.089 18.146 19.048 Atomic orbital electron populations 1.22370 0.96182 0.98988 1.02657 1.20604 0.94607 0.96197 0.94320 1.21632 0.99995 0.95614 0.99911 1.19139 0.96088 0.95022 0.90059 1.21264 1.30708 1.11846 0.90590 0.92224 1.25013 0.95423 0.95099 0.99040 1.69975 1.37362 1.23207 1.23167 0.86617 0.78614 0.79734 0.83531 1.19770 1.21153 1.21201 1.22502 1.00843 0.93815 0.90123 1.65474 1.15327 1.40157 1.01338 1.23689 0.90305 1.01506 0.93909 1.23432 0.93804 1.00391 0.96635 0.88522 1.23483 0.96258 0.84429 0.98711 1.89129 1.36080 1.27939 1.76015 1.23519 0.85349 0.98549 0.95100 1.22626 0.95858 0.95566 0.95539 1.21565 0.98883 0.98535 0.99163 1.23183 0.99819 0.95709 0.89921 0.93658 0.91085 0.94522 0.94069 0.92789 0.93918 0.96679 0.96925 0.93225 0.91132 0.95310 0.88748 0.92806 0.88876 0.92528 0.89168 0.92408 0.91319 0.92734 0.92393 0.93674 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 7.19 37.16 0.27 -2.47 16 2 C -0.06 -1.15 0.53 -154.51 -0.08 -1.23 16 3 C -0.11 -2.22 7.70 37.16 0.29 -1.94 16 4 C 0.03 0.88 4.01 -27.88 -0.11 0.76 16 5 C -0.51 -13.88 7.22 -34.44 -0.25 -14.13 16 6 H 0.06 1.60 6.07 -52.49 -0.32 1.28 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.05 0.99 4.16 -3.83 -0.02 0.97 16 14 N -0.50 -7.57 4.45 -230.21 -1.02 -8.60 16 15 C 0.03 0.46 3.74 -2.27 -0.01 0.45 16 16 C -0.12 -1.38 3.86 -87.91 -0.34 -1.72 16 17 H 0.10 0.98 7.98 -51.93 -0.41 0.57 16 18 C 0.05 0.52 6.86 37.89 0.26 0.78 16 19 O -0.37 -4.82 11.65 -35.23 -0.41 -5.23 16 20 C 0.05 0.54 6.45 37.88 0.24 0.79 16 21 C -0.10 -1.02 1.10 -151.80 -0.17 -1.19 16 22 C -0.12 -1.11 8.79 37.16 0.33 -0.78 16 23 C 0.04 0.54 5.58 -2.27 -0.01 0.53 16 24 H 0.04 0.75 5.18 -51.93 -0.27 0.48 16 25 H 0.07 1.51 6.30 -51.93 -0.33 1.18 16 26 H 0.04 0.65 6.18 -51.93 -0.32 0.33 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 29 H 0.04 0.74 6.18 -51.93 -0.32 0.42 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 34 H 0.03 0.53 7.66 -51.93 -0.40 0.13 16 35 H 0.09 1.35 4.65 -51.93 -0.24 1.11 16 36 H 0.05 0.82 5.70 -51.93 -0.30 0.52 16 37 H 0.09 0.97 7.74 -51.93 -0.40 0.57 16 38 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.09 0.88 7.74 -51.93 -0.40 0.48 16 40 H 0.06 0.51 7.99 -51.93 -0.42 0.10 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.63 7.30 -51.93 -0.38 0.25 16 45 H 0.08 0.96 7.90 -51.93 -0.41 0.55 16 LS Contribution 327.53 15.07 4.94 4.94 Total: -1.00 -29.82 327.53 -8.26 -38.08 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.77 Total: -1.87 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 0.30 Total: -17.71 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.29 Total: -34.84 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.41 Total: -5.23 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.82 -8.26 -38.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597212592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.482 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds