Wall clock time and date at job start Mon Mar 30 2020 07:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46804 * 2 1 4 4 C 1.53004 * 109.47222 * 240.00345 * 2 1 3 5 5 C 1.50703 * 109.46935 * 59.99473 * 4 2 1 6 6 H 1.07996 * 120.00189 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99549 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00518 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99667 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47167 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46984 * 120.00233 * 9 7 5 12 12 H 1.48498 * 109.46969 * 239.99780 * 9 7 5 13 13 C 1.53000 * 109.47461 * 120.00023 * 2 1 3 14 14 N 1.46893 * 109.47120 * 289.55255 * 13 2 1 15 15 C 1.48508 * 111.00290 * 57.86209 * 14 13 2 16 16 C 1.54268 * 104.74248 * 159.33334 * 15 14 13 17 17 H 1.08998 * 113.16793 * 99.35421 * 16 15 14 18 18 C 1.54389 * 108.77412 * 225.41000 * 16 15 14 19 19 O 1.44383 * 104.91926 * 87.14233 * 18 16 15 20 20 C 1.44388 * 105.25571 * 40.75433 * 19 18 16 21 21 C 1.54387 * 104.91951 * 319.24459 * 20 19 18 22 22 C 1.53001 * 112.68261 * 147.19904 * 21 20 19 23 23 C 1.48512 * 111.00120 * 173.25512 * 14 13 2 24 24 H 1.09001 * 109.47483 * 331.54799 * 1 2 3 25 25 H 1.08999 * 109.47368 * 91.55721 * 1 2 3 26 26 H 1.09005 * 109.46915 * 211.55395 * 1 2 3 27 27 H 1.09000 * 109.47105 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47289 * 300.00191 * 3 2 1 29 29 H 1.09000 * 109.47243 * 60.00363 * 3 2 1 30 30 H 1.09000 * 109.47309 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.46797 * 299.99685 * 4 2 1 32 32 H 0.97000 * 120.00679 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.46986 * 169.54503 * 13 2 1 34 34 H 1.09004 * 109.46883 * 49.55309 * 13 2 1 35 35 H 1.09006 * 110.37812 * 278.14664 * 15 14 13 36 36 H 1.08992 * 110.38353 * 40.51829 * 15 14 13 37 37 H 1.08998 * 110.34854 * 328.27665 * 18 16 15 38 38 H 1.09008 * 110.34877 * 205.99995 * 18 16 15 39 39 H 1.08997 * 110.34567 * 200.38483 * 20 19 18 40 40 H 1.08997 * 110.34584 * 78.10235 * 20 19 18 41 41 H 1.08996 * 109.47022 * 182.51961 * 22 21 20 42 42 H 1.09001 * 109.46651 * 302.52233 * 22 21 20 43 43 H 1.09003 * 109.46693 * 62.51909 * 22 21 20 44 44 H 1.08999 * 110.37976 * 319.48149 * 23 14 13 45 45 H 1.08997 * 110.38135 * 81.84940 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5375 -0.0107 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6255 -1.5518 -3.8528 9 14 1.2480 0.3990 -5.2572 10 1 0.4234 1.5658 -4.8530 11 1 2.4033 0.8648 -6.0656 12 1 0.4223 -0.5339 -6.0654 13 6 2.0400 -0.7212 1.2492 14 7 1.7663 0.1009 2.4354 15 6 0.3148 0.3888 2.5600 16 6 0.1144 0.7616 4.0435 17 1 0.0696 1.8373 4.2131 18 6 -1.1311 0.0221 4.5778 19 8 -0.6395 -1.2607 5.0224 20 6 0.6170 -0.9803 5.6760 21 6 1.2987 0.0825 4.7875 22 6 2.1533 1.0640 5.5920 23 6 2.1001 -0.6349 3.6815 24 1 -0.3634 0.9035 0.4896 25 1 -0.3634 -0.0279 -1.0273 26 1 -0.3633 -0.8758 0.5378 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7208 -1.2496 31 1 1.6767 -1.7489 -1.2493 32 1 2.8599 -1.8832 -4.7337 33 1 3.1139 -0.8855 1.1608 34 1 1.5326 -1.6810 1.3473 35 1 0.0371 1.2246 1.9177 36 1 -0.2706 -0.4954 2.3083 37 1 -1.8649 -0.1081 3.7824 38 1 -1.5685 0.5703 5.4122 39 1 1.2280 -1.8816 5.7253 40 1 0.4437 -0.5834 6.6762 41 1 2.5721 1.8149 4.9220 42 1 1.5341 1.5529 6.3441 43 1 2.9625 0.5233 6.0830 44 1 1.7890 -1.6765 3.6021 45 1 3.1689 -0.5713 3.8851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597212592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:39 Heat of formation + Delta-G solvation = -62.382510 kcal Electronic energy + Delta-G solvation = -22021.237783 eV Core-core repulsion = 19037.662090 eV Total energy + Delta-G solvation = -2983.575694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.81960 -39.30614 -36.78056 -34.66264 -33.24241 -32.12978 -29.22810 -28.33249 -27.81529 -27.08633 -26.62373 -25.11021 -23.14626 -21.97894 -20.37182 -19.48814 -18.31380 -17.32135 -16.75305 -16.58973 -16.33850 -16.17545 -15.79044 -15.13878 -14.77978 -14.75118 -14.43393 -14.20882 -13.80416 -13.73018 -13.63715 -13.16261 -12.88043 -12.72789 -12.66324 -12.57590 -12.35653 -12.25108 -12.14814 -11.92873 -11.78385 -11.70527 -11.56818 -11.32949 -11.29991 -10.87714 -10.78190 -10.52649 -10.50918 -9.35979 -8.14819 -6.21974 1.39971 1.40732 1.53200 2.43138 2.94350 3.19045 3.21833 3.32820 3.53075 3.96476 4.05899 4.08412 4.16317 4.21298 4.26919 4.33437 4.47316 4.60301 4.63764 4.68984 4.70113 4.73525 4.80430 4.81791 4.87286 4.95131 4.99773 5.02865 5.10910 5.12631 5.21179 5.21408 5.24946 5.40112 5.49615 5.53211 5.60751 5.64231 5.83861 5.86810 5.89939 5.99674 6.09483 6.34427 6.92835 7.45247 8.97947 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037817 B = 0.004318 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.232771 B = 6482.616829 C = 6606.059323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 C -0.103 4.103 4 C 0.041 3.959 5 C -0.512 4.512 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.067 3.933 14 N -0.501 5.501 15 C 0.031 3.969 16 C -0.118 4.118 17 H 0.116 0.884 18 C 0.047 3.953 19 O -0.401 6.401 20 C 0.051 3.949 21 C -0.089 4.089 22 C -0.119 4.119 23 C 0.039 3.961 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.030 0.970 28 H 0.039 0.961 29 H 0.069 0.931 30 H -0.016 1.016 31 H -0.020 1.020 32 H 0.260 0.740 33 H 0.058 0.942 34 H 0.016 0.984 35 H 0.093 0.907 36 H 0.039 0.961 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.032 0.968 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 6.273 21.047 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.053 4.053 3 C -0.160 4.160 4 C 0.004 3.996 5 C -0.550 4.550 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.183 1.183 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.062 4.062 14 N -0.224 5.224 15 C -0.096 4.096 16 C -0.137 4.137 17 H 0.134 0.866 18 C -0.029 4.029 19 O -0.321 6.321 20 C -0.026 4.026 21 C -0.089 4.089 22 C -0.176 4.176 23 C -0.089 4.089 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.002 0.998 31 H -0.001 1.001 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.111 0.889 36 H 0.057 0.943 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.636 6.435 20.825 22.284 hybrid contribution -0.207 -0.990 -1.397 1.724 sum -4.843 5.445 19.428 20.750 Atomic orbital electron populations 1.22271 0.94801 1.00757 1.01354 1.20459 0.95651 0.96340 0.92854 1.21522 0.99272 0.94811 1.00438 1.19016 0.94017 0.93891 0.92711 1.21615 1.30213 1.11871 0.91325 0.91478 1.25933 0.95679 0.95877 1.02626 1.70119 1.38926 1.24981 1.24002 0.85504 0.78146 0.78820 0.79250 1.18307 1.20780 1.20857 1.22207 0.99749 0.93452 0.90766 1.65439 1.16494 1.39500 1.00970 1.23675 0.89010 1.00695 0.96246 1.23437 0.94328 1.01571 0.94345 0.86606 1.23590 0.95930 0.83836 0.99588 1.89106 1.37103 1.29356 1.76512 1.23639 0.84521 0.98613 0.95819 1.22630 0.95526 0.95845 0.94937 1.21543 0.99110 0.97873 0.99114 1.23272 1.00701 0.95169 0.89780 0.90728 0.93690 0.94056 0.95094 0.94164 0.91238 0.99779 1.00139 0.93154 0.92381 0.96527 0.88941 0.94316 0.89099 0.90092 0.89133 0.90100 0.92184 0.90830 0.91429 0.95012 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 7.19 71.98 0.52 -4.54 16 2 C -0.05 -2.16 0.53 -52.18 -0.03 -2.19 16 3 C -0.10 -3.96 7.70 71.98 0.55 -3.41 16 4 C 0.04 2.20 4.01 29.85 0.12 2.32 16 5 C -0.51 -28.71 7.22 25.60 0.18 -28.53 16 6 H 0.07 3.60 6.07 -2.91 -0.02 3.58 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 8 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 9 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.07 2.45 4.16 86.30 0.36 2.81 16 14 N -0.50 -14.71 4.45 -882.25 -3.93 -18.64 16 15 C 0.03 0.81 3.74 86.42 0.32 1.13 16 16 C -0.12 -2.30 3.86 -9.04 -0.03 -2.33 16 17 H 0.12 1.87 7.98 -2.39 -0.02 1.85 16 18 C 0.05 0.89 6.86 72.45 0.50 1.38 16 19 O -0.40 -9.60 11.65 -148.98 -1.74 -11.33 16 20 C 0.05 0.93 6.45 72.45 0.47 1.39 16 21 C -0.09 -1.67 1.10 -50.43 -0.06 -1.72 16 22 C -0.12 -1.71 8.79 71.98 0.63 -1.07 16 23 C 0.04 0.96 5.58 86.42 0.48 1.45 16 24 H 0.07 2.34 5.18 -2.39 -0.01 2.33 16 25 H 0.04 1.91 6.30 -2.39 -0.02 1.89 16 26 H 0.04 1.48 6.18 -2.38 -0.01 1.47 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.63 6.62 -2.39 -0.02 1.62 16 29 H 0.07 2.28 6.18 -2.39 -0.01 2.27 16 30 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H -0.02 -1.17 8.14 -2.38 -0.02 -1.19 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 33 H 0.06 2.24 8.11 -2.39 -0.02 2.22 16 34 H 0.02 0.64 7.66 -2.38 -0.02 0.62 16 35 H 0.09 2.42 4.65 -2.38 -0.01 2.40 16 36 H 0.04 1.14 5.70 -2.39 -0.01 1.12 16 37 H 0.09 1.72 7.74 -2.39 -0.02 1.70 16 38 H 0.08 1.14 8.14 -2.38 -0.02 1.13 16 39 H 0.09 1.62 7.74 -2.39 -0.02 1.60 16 40 H 0.08 1.12 7.99 -2.39 -0.02 1.10 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.03 0.88 7.30 -2.39 -0.02 0.86 16 45 H 0.08 1.96 7.90 -2.39 -0.02 1.95 16 Total: -1.00 -65.79 327.53 2.08 -63.71 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.95 Total: 10.43 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 4.48 Total: -33.11 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -3.64 Total: -76.53 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.74 Total: -11.33 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.79 2.08 -63.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597212592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.330 kcal (2) G-P(sol) polarization free energy of solvation -65.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds