Wall clock time and date at job start Mon Mar 30 2020 07:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47058 * 2 1 4 4 C 1.53001 * 109.47293 * 239.99960 * 2 1 3 5 5 C 1.50700 * 109.46707 * 60.00235 * 4 2 1 6 6 H 1.08001 * 120.00711 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99956 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99719 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00560 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46898 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46996 * 119.99896 * 9 7 5 12 12 H 1.48500 * 109.47527 * 240.00317 * 9 7 5 13 13 C 1.53000 * 109.47381 * 119.99914 * 2 1 3 14 14 N 1.46901 * 109.46880 * 307.02329 * 13 2 1 15 15 C 1.50156 * 111.00183 * 291.78685 * 14 13 2 16 16 C 1.51282 * 102.32145 * 212.48475 * 15 14 13 17 17 H 1.09002 * 111.27567 * 288.70886 * 16 15 14 18 18 C 1.51273 * 124.49675 * 150.95960 * 16 15 14 19 19 O 1.48003 * 101.77627 * 209.96884 * 18 16 15 20 20 C 1.45711 * 109.19588 * 25.66593 * 19 18 16 21 21 C 1.49313 * 104.89803 * 6.78028 * 20 19 18 22 22 C 1.52999 * 107.89462 * 77.39891 * 21 20 19 23 23 C 1.49298 * 129.38452 * 212.56126 * 21 20 19 24 24 H 1.08995 * 109.47118 * 294.68587 * 1 2 3 25 25 H 1.09000 * 109.46719 * 54.68600 * 1 2 3 26 26 H 1.09007 * 109.46701 * 174.68452 * 1 2 3 27 27 H 1.09005 * 109.47306 * 160.43256 * 3 2 1 28 28 H 1.08991 * 109.47503 * 280.43309 * 3 2 1 29 29 H 1.09002 * 109.46798 * 40.43613 * 3 2 1 30 30 H 1.08996 * 109.46983 * 179.97438 * 4 2 1 31 31 H 1.08992 * 109.47010 * 300.00174 * 4 2 1 32 32 H 0.96997 * 119.99513 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47612 * 187.02163 * 13 2 1 34 34 H 1.09003 * 109.46724 * 67.01887 * 13 2 1 35 35 H 1.08997 * 110.83595 * 94.27477 * 15 14 13 36 36 H 1.09000 * 111.00769 * 330.77135 * 15 14 13 37 37 H 1.09001 * 110.76850 * 327.65051 * 18 16 15 38 38 H 1.09000 * 110.76515 * 91.04094 * 18 16 15 39 39 H 1.09001 * 110.35712 * 247.91994 * 20 19 18 40 40 H 1.09005 * 110.44782 * 125.67747 * 20 19 18 41 41 H 1.08995 * 109.47068 * 309.63295 * 22 21 20 42 42 H 1.09005 * 109.46876 * 69.62724 * 22 21 20 43 43 H 1.08997 * 109.47454 * 189.62980 * 22 21 20 44 44 H 1.09001 * 110.42668 * 29.08516 * 23 21 20 45 45 H 1.08996 * 110.52587 * 266.65668 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4796 6 1 0.9165 0.8671 -2.3806 7 6 1.8713 -0.4814 -3.7319 8 7 2.6282 -1.5502 -3.8526 9 14 1.2481 0.3987 -5.2572 10 1 0.4227 1.5652 -4.8530 11 1 2.4030 0.8663 -6.0654 12 1 0.4239 -0.5352 -6.0657 13 6 2.0401 -0.7212 1.2492 14 7 1.4170 -0.1334 2.4427 15 6 1.9066 1.2677 2.6705 16 6 1.8823 1.3768 4.1792 17 1 0.8606 1.4219 4.5561 18 6 2.8058 2.2595 4.9894 19 8 2.9164 1.5001 6.2549 20 6 2.6691 0.0888 5.9899 21 6 2.5722 -0.0114 4.5032 22 6 3.9919 0.0386 3.9352 23 6 1.7448 -0.9314 3.6677 24 1 -0.3633 0.4292 0.9337 25 1 -0.3633 0.5941 -0.8386 26 1 -0.3633 -1.0233 -0.0952 27 1 3.0741 1.4624 0.3442 28 1 1.9857 1.8471 -1.0106 29 1 1.4236 2.0458 0.6666 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7488 -1.2492 32 1 2.8632 -1.8811 -4.7336 33 1 3.1228 -0.6137 1.3143 34 1 1.7829 -1.7787 1.1886 35 1 1.2303 1.9931 2.2184 36 1 2.9197 1.3946 2.2889 37 1 3.7793 2.3464 4.5067 38 1 2.3618 3.2426 5.1459 39 1 1.7337 -0.2258 6.4529 40 1 3.4963 -0.5184 6.3576 41 1 4.5223 0.8920 4.3575 42 1 4.5188 -0.8803 4.1926 43 1 3.9461 0.1396 2.8509 44 1 0.8328 -1.2087 4.1964 45 1 2.3144 -1.8215 3.4008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597212596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:47 Heat of formation + Delta-G solvation = -13.200270 kcal Electronic energy + Delta-G solvation = -22106.600148 eV Core-core repulsion = 19125.157157 eV Total energy + Delta-G solvation = -2981.442992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59305 -37.90182 -35.64408 -32.62493 -31.38845 -31.01412 -27.67967 -27.46927 -26.73153 -26.06160 -25.82537 -23.51919 -21.77503 -20.38516 -19.35394 -17.93917 -16.83419 -16.20798 -15.96512 -15.50365 -15.16322 -14.64265 -14.27634 -14.12939 -13.72715 -13.14212 -12.97026 -12.74764 -12.59605 -12.25328 -12.13627 -12.02239 -11.97161 -11.66275 -11.34751 -11.07636 -10.91502 -10.84100 -10.73830 -10.56082 -10.47655 -10.27763 -10.11638 -9.89946 -9.74291 -9.64977 -8.98971 -8.82175 -8.32546 -8.07909 -5.97130 -3.96988 3.31794 3.39819 3.43219 3.55934 3.61409 4.04054 4.44332 4.48757 4.85759 4.91840 5.00700 5.09323 5.30711 5.35762 5.38869 5.39744 5.45192 5.55904 5.59686 5.64259 5.70459 5.77115 5.87602 5.91743 5.92402 5.95667 6.10028 6.19693 6.29864 6.34893 6.47153 6.53177 6.66127 6.74149 6.87540 6.99234 7.18259 7.25102 7.30777 7.42840 7.70050 7.84921 8.03183 8.47803 9.08620 9.65860 11.14596 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042466 B = 0.004237 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.196838 B = 6606.236691 C = 6734.866833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 C -0.142 4.142 4 C 0.034 3.966 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.057 3.943 14 N -0.511 5.511 15 C 0.054 3.946 16 C -0.148 4.148 17 H 0.095 0.905 18 C 0.064 3.936 19 O -0.395 6.395 20 C 0.082 3.918 21 C -0.139 4.139 22 C -0.163 4.163 23 C 0.068 3.932 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.011 0.989 31 H 0.014 0.986 32 H 0.258 0.742 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.191 4.209 17.442 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.199 4.199 4 C -0.003 4.003 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.071 4.071 14 N -0.235 5.235 15 C -0.073 4.073 16 C -0.167 4.167 17 H 0.113 0.887 18 C -0.012 4.012 19 O -0.315 6.315 20 C 0.005 3.995 21 C -0.141 4.141 22 C -0.220 4.220 23 C -0.059 4.059 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.229 4.166 17.393 17.887 hybrid contribution 0.655 0.122 -1.090 1.278 sum 0.427 4.288 16.303 16.863 Atomic orbital electron populations 1.21587 0.94899 1.00749 0.99930 1.20576 0.95949 0.94949 0.94014 1.22238 0.98437 0.96837 1.02400 1.19130 0.95846 0.95172 0.90201 1.21268 1.30616 1.11912 0.90575 0.92213 1.25016 0.95402 0.95119 0.99055 1.69981 1.37336 1.23282 1.23171 0.86617 0.78604 0.79759 0.83510 1.19757 1.21206 1.21146 1.22570 0.95576 0.98890 0.90018 1.65371 1.55619 1.00666 1.01808 1.22870 1.00337 0.92160 0.91937 1.23371 1.00415 0.95159 0.97762 0.88658 1.23049 0.98822 0.94885 0.84454 1.89617 1.93306 1.17966 1.30608 1.21922 1.01116 0.83241 0.93212 1.22111 0.97308 0.98519 0.96112 1.22457 0.94955 1.02428 1.02145 1.21832 0.97974 0.95168 0.90954 0.93547 0.93069 0.94160 0.94720 0.91320 0.93629 0.97030 0.96728 0.93233 0.95188 0.91199 0.89050 0.91939 0.90877 0.89183 0.91421 0.90607 0.91615 0.92260 0.91310 0.90394 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 7.88 37.16 0.29 -1.90 16 2 C -0.05 -1.06 0.59 -154.51 -0.09 -1.15 16 3 C -0.14 -2.58 7.11 37.16 0.26 -2.32 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.70 7.43 -34.44 -0.26 -13.95 16 6 H 0.06 1.58 5.87 -52.49 -0.31 1.28 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 C 0.06 0.96 3.67 -3.82 -0.01 0.94 16 14 N -0.51 -7.19 4.12 -232.47 -0.96 -8.14 16 15 C 0.05 0.68 4.06 -2.86 -0.01 0.67 16 16 C -0.15 -1.63 3.15 -89.40 -0.28 -1.91 16 17 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 18 C 0.06 0.66 7.18 36.29 0.26 0.92 16 19 O -0.39 -4.74 11.58 -35.23 -0.41 -5.14 16 20 C 0.08 0.84 6.98 35.34 0.25 1.09 16 21 C -0.14 -1.50 1.49 -155.19 -0.23 -1.73 16 22 C -0.16 -1.79 7.38 37.16 0.27 -1.52 16 23 C 0.07 0.81 6.09 -4.01 -0.02 0.79 16 24 H 0.05 0.80 7.24 -51.93 -0.38 0.42 16 25 H 0.05 1.04 6.80 -51.93 -0.35 0.69 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.59 6.81 -51.93 -0.35 0.24 16 28 H 0.07 1.41 6.24 -51.93 -0.32 1.09 16 29 H 0.04 0.72 5.09 -51.93 -0.26 0.46 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.03 0.51 6.18 -51.93 -0.32 0.18 16 34 H 0.07 1.21 8.05 -51.93 -0.42 0.80 16 35 H 0.09 1.20 6.02 -51.93 -0.31 0.89 16 36 H 0.06 0.83 4.46 -51.93 -0.23 0.59 16 37 H 0.07 0.72 6.05 -51.93 -0.31 0.41 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.71 7.95 -51.93 -0.41 0.29 16 41 H 0.07 0.70 5.53 -51.93 -0.29 0.41 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.86 4.03 -51.93 -0.21 0.65 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.77 7.46 -51.93 -0.39 0.39 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -29.08 319.58 -8.01 -37.09 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.39 Total: -1.19 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 0.22 Total: -17.91 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: -0.22 Total: -34.12 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.41 Total: -5.14 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.08 -8.01 -37.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597212596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.886 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds