Wall clock time and date at job start Mon Mar 30 2020 07:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47058 * 2 1 4 4 C 1.53001 * 109.47293 * 239.99960 * 2 1 3 5 5 C 1.50700 * 109.46707 * 60.00235 * 4 2 1 6 6 H 1.08001 * 120.00711 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99956 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99719 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00560 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46898 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46996 * 119.99896 * 9 7 5 12 12 H 1.48500 * 109.47527 * 240.00317 * 9 7 5 13 13 C 1.53000 * 109.47381 * 119.99914 * 2 1 3 14 14 N 1.46901 * 109.46880 * 307.02329 * 13 2 1 15 15 C 1.50156 * 111.00183 * 291.78685 * 14 13 2 16 16 C 1.51282 * 102.32145 * 212.48475 * 15 14 13 17 17 H 1.09002 * 111.27567 * 288.70886 * 16 15 14 18 18 C 1.51273 * 124.49675 * 150.95960 * 16 15 14 19 19 O 1.48003 * 101.77627 * 209.96884 * 18 16 15 20 20 C 1.45711 * 109.19588 * 25.66593 * 19 18 16 21 21 C 1.49313 * 104.89803 * 6.78028 * 20 19 18 22 22 C 1.52999 * 107.89462 * 77.39891 * 21 20 19 23 23 C 1.49298 * 129.38452 * 212.56126 * 21 20 19 24 24 H 1.08995 * 109.47118 * 294.68587 * 1 2 3 25 25 H 1.09000 * 109.46719 * 54.68600 * 1 2 3 26 26 H 1.09007 * 109.46701 * 174.68452 * 1 2 3 27 27 H 1.09005 * 109.47306 * 160.43256 * 3 2 1 28 28 H 1.08991 * 109.47503 * 280.43309 * 3 2 1 29 29 H 1.09002 * 109.46798 * 40.43613 * 3 2 1 30 30 H 1.08996 * 109.46983 * 179.97438 * 4 2 1 31 31 H 1.08992 * 109.47010 * 300.00174 * 4 2 1 32 32 H 0.96997 * 119.99513 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47612 * 187.02163 * 13 2 1 34 34 H 1.09003 * 109.46724 * 67.01887 * 13 2 1 35 35 H 1.08997 * 110.83595 * 94.27477 * 15 14 13 36 36 H 1.09000 * 111.00769 * 330.77135 * 15 14 13 37 37 H 1.09001 * 110.76850 * 327.65051 * 18 16 15 38 38 H 1.09000 * 110.76515 * 91.04094 * 18 16 15 39 39 H 1.09001 * 110.35712 * 247.91994 * 20 19 18 40 40 H 1.09005 * 110.44782 * 125.67747 * 20 19 18 41 41 H 1.08995 * 109.47068 * 309.63295 * 22 21 20 42 42 H 1.09005 * 109.46876 * 69.62724 * 22 21 20 43 43 H 1.08997 * 109.47454 * 189.62980 * 22 21 20 44 44 H 1.09001 * 110.42668 * 29.08516 * 23 21 20 45 45 H 1.08996 * 110.52587 * 266.65668 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4796 6 1 0.9165 0.8671 -2.3806 7 6 1.8713 -0.4814 -3.7319 8 7 2.6282 -1.5502 -3.8526 9 14 1.2481 0.3987 -5.2572 10 1 0.4227 1.5652 -4.8530 11 1 2.4030 0.8663 -6.0654 12 1 0.4239 -0.5352 -6.0657 13 6 2.0401 -0.7212 1.2492 14 7 1.4170 -0.1334 2.4427 15 6 1.9066 1.2677 2.6705 16 6 1.8823 1.3768 4.1792 17 1 0.8606 1.4219 4.5561 18 6 2.8058 2.2595 4.9894 19 8 2.9164 1.5001 6.2549 20 6 2.6691 0.0888 5.9899 21 6 2.5722 -0.0114 4.5032 22 6 3.9919 0.0386 3.9352 23 6 1.7448 -0.9314 3.6677 24 1 -0.3633 0.4292 0.9337 25 1 -0.3633 0.5941 -0.8386 26 1 -0.3633 -1.0233 -0.0952 27 1 3.0741 1.4624 0.3442 28 1 1.9857 1.8471 -1.0106 29 1 1.4236 2.0458 0.6666 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7488 -1.2492 32 1 2.8632 -1.8811 -4.7336 33 1 3.1228 -0.6137 1.3143 34 1 1.7829 -1.7787 1.1886 35 1 1.2303 1.9931 2.2184 36 1 2.9197 1.3946 2.2889 37 1 3.7793 2.3464 4.5067 38 1 2.3618 3.2426 5.1459 39 1 1.7337 -0.2258 6.4529 40 1 3.4963 -0.5184 6.3576 41 1 4.5223 0.8920 4.3575 42 1 4.5188 -0.8803 4.1926 43 1 3.9461 0.1396 2.8509 44 1 0.8328 -1.2087 4.1964 45 1 2.3144 -1.8215 3.4008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597212596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:46 Heat of formation + Delta-G solvation = -31.081487 kcal Electronic energy + Delta-G solvation = -22107.375536 eV Core-core repulsion = 19125.157157 eV Total energy + Delta-G solvation = -2982.218380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.53289 -39.20982 -36.93775 -34.54788 -32.63678 -31.94231 -29.23774 -28.56114 -28.25409 -27.19332 -27.11358 -25.20478 -23.15720 -21.33908 -20.28109 -19.50807 -18.29534 -17.74036 -16.98845 -16.57100 -16.39356 -16.11927 -15.53957 -15.36509 -14.90457 -14.61783 -14.24270 -14.19082 -13.99489 -13.66629 -13.29570 -13.15104 -13.08366 -12.87953 -12.78522 -12.61644 -12.43241 -12.37687 -12.15084 -12.04240 -11.88043 -11.75011 -11.48007 -11.30476 -11.05013 -10.80853 -10.63478 -10.55002 -10.50698 -9.22329 -8.14109 -6.20648 1.39871 1.41214 1.53135 2.43582 2.71300 2.74820 2.97099 3.20108 3.57536 3.94514 4.06230 4.08919 4.15184 4.16249 4.27631 4.40441 4.42709 4.50610 4.55823 4.61846 4.67918 4.73397 4.81659 4.84338 4.90168 4.95931 5.00344 5.04041 5.07175 5.09292 5.13117 5.24781 5.26821 5.33626 5.53727 5.55273 5.62219 5.65350 5.67890 5.84903 5.92677 5.96565 6.09419 6.37077 6.94574 7.46631 8.98464 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042466 B = 0.004237 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.196838 B = 6606.236691 C = 6734.866833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.051 4.051 3 C -0.133 4.133 4 C 0.041 3.959 5 C -0.511 4.511 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.071 3.929 14 N -0.516 5.516 15 C 0.054 3.946 16 C -0.140 4.140 17 H 0.096 0.904 18 C 0.065 3.935 19 O -0.411 6.411 20 C 0.083 3.917 21 C -0.133 4.133 22 C -0.161 4.161 23 C 0.069 3.931 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.027 0.973 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.074 0.926 30 H -0.017 1.017 31 H -0.017 1.017 32 H 0.259 0.741 33 H 0.026 0.974 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.524 5.628 18.836 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.052 4.052 3 C -0.190 4.190 4 C 0.003 3.997 5 C -0.550 4.550 6 H 0.084 0.916 7 C -0.200 4.200 8 N -0.580 5.580 9 Si 0.780 3.220 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.057 4.057 14 N -0.240 5.240 15 C -0.073 4.073 16 C -0.159 4.159 17 H 0.115 0.885 18 C -0.011 4.011 19 O -0.332 6.332 20 C 0.006 3.994 21 C -0.134 4.134 22 C -0.217 4.217 23 C -0.058 4.058 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.001 0.999 31 H 0.002 0.998 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.952 5.598 18.804 19.643 hybrid contribution 0.894 -0.351 -1.478 1.762 sum -0.058 5.247 17.326 18.104 Atomic orbital electron populations 1.21490 0.94292 0.99884 1.00496 1.20437 0.96303 0.95566 0.92874 1.22150 0.99478 0.95869 1.01522 1.19005 0.93885 0.94037 0.92731 1.21636 1.30029 1.11860 0.91433 0.91646 1.25902 0.95717 0.95893 1.02521 1.70118 1.38915 1.25012 1.23935 0.85545 0.78134 0.78842 0.79441 1.18446 1.20833 1.20881 1.22247 0.95326 0.97967 0.90206 1.65308 1.55400 1.01608 1.01643 1.22824 0.99990 0.91124 0.93349 1.23259 1.00715 0.95538 0.96381 0.88534 1.23136 0.98904 0.95265 0.83767 1.89606 1.93465 1.18746 1.31409 1.21994 1.02138 0.82759 0.92489 1.22019 0.96775 0.97984 0.96599 1.22429 0.95378 1.02957 1.00962 1.21841 0.98811 0.94999 0.90172 0.91106 0.94532 0.95374 0.94071 0.93894 0.90719 0.99906 0.99844 0.93201 0.95560 0.92348 0.89070 0.92342 0.90563 0.87637 0.90388 0.89641 0.91089 0.91781 0.93015 0.89235 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.93 7.88 71.98 0.57 -3.36 16 2 C -0.05 -2.01 0.59 -52.18 -0.03 -2.04 16 3 C -0.13 -4.73 7.11 71.98 0.51 -4.22 16 4 C 0.04 2.11 4.04 29.85 0.12 2.24 16 5 C -0.51 -28.22 7.43 25.60 0.19 -28.03 16 6 H 0.07 3.48 5.87 -2.91 -0.02 3.46 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 9 Si 0.95 44.39 29.54 68.60 2.03 46.41 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.07 2.36 3.67 86.30 0.32 2.68 16 14 N -0.52 -13.67 4.12 -889.39 -3.66 -17.33 16 15 C 0.05 1.24 4.06 85.10 0.35 1.59 16 16 C -0.14 -2.71 3.15 -10.00 -0.03 -2.74 16 17 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 18 C 0.06 1.16 7.18 71.42 0.51 1.67 16 19 O -0.41 -8.78 11.58 -148.98 -1.72 -10.50 16 20 C 0.08 1.47 6.98 70.81 0.49 1.97 16 21 C -0.13 -2.55 1.49 -52.62 -0.08 -2.63 16 22 C -0.16 -3.26 7.38 71.98 0.53 -2.73 16 23 C 0.07 1.51 6.09 84.55 0.51 2.02 16 24 H 0.07 2.31 7.24 -2.39 -0.02 2.29 16 25 H 0.04 1.46 6.80 -2.39 -0.02 1.44 16 26 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.04 1.38 6.81 -2.38 -0.02 1.36 16 28 H 0.04 1.74 6.24 -2.39 -0.01 1.72 16 29 H 0.07 2.21 5.09 -2.39 -0.01 2.19 16 30 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.03 0.89 6.18 -2.39 -0.01 0.88 16 34 H 0.06 2.06 8.05 -2.39 -0.02 2.04 16 35 H 0.09 2.13 6.02 -2.39 -0.01 2.11 16 36 H 0.06 1.44 4.46 -2.39 -0.01 1.43 16 37 H 0.08 1.32 6.05 -2.39 -0.01 1.31 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.36 7.95 -2.38 -0.02 1.34 16 41 H 0.07 1.37 5.53 -2.39 -0.01 1.35 16 42 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.05 1.24 4.03 -2.39 -0.01 1.23 16 44 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.42 7.46 -2.39 -0.02 1.40 16 Total: -1.00 -62.90 319.58 2.32 -60.58 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.97 Total: 11.21 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 4.43 Total: -33.34 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -3.38 Total: -74.36 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -1.72 Total: -10.50 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -62.90 2.32 -60.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597212596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.495 kcal (2) G-P(sol) polarization free energy of solvation -62.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds