Wall clock time and date at job start Mon Mar 30 2020 08:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47595 * 2 1 4 4 C 1.52997 * 109.47512 * 61.16497 * 3 2 1 5 5 N 1.46500 * 109.46939 * 59.16298 * 4 3 2 6 6 C 1.34774 * 119.99844 * 182.51807 * 5 4 3 7 7 O 1.21286 * 120.00286 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99960 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.46862 * 60.00454 * 8 6 5 10 10 C 1.52998 * 109.47571 * 300.00861 * 8 6 5 11 11 C 1.50700 * 109.47458 * 180.02562 * 8 6 5 12 12 H 1.07999 * 119.99807 * 34.30174 * 11 8 6 13 13 C 1.37877 * 120.00381 * 214.30896 * 11 8 6 14 14 N 1.31513 * 120.00176 * 179.82303 * 13 11 8 15 15 Si 1.86800 * 120.00043 * 359.81653 * 13 11 8 16 16 H 1.48505 * 109.46928 * 88.66965 * 15 13 11 17 17 H 1.48491 * 109.47486 * 208.67197 * 15 13 11 18 18 H 1.48503 * 109.46901 * 328.67185 * 15 13 11 19 19 C 1.53005 * 109.46896 * 301.16711 * 3 2 1 20 20 C 1.52997 * 109.47234 * 180.02562 * 19 3 2 21 21 C 1.52993 * 109.47216 * 59.99973 * 20 19 3 22 22 C 1.53002 * 109.47161 * 299.99793 * 21 20 19 23 23 C 1.52995 * 109.47046 * 60.00360 * 22 21 20 24 24 H 1.09000 * 109.47314 * 305.26326 * 1 2 3 25 25 H 1.09005 * 109.46615 * 65.25718 * 1 2 3 26 26 H 1.09002 * 109.47501 * 185.25501 * 1 2 3 27 27 H 1.09004 * 109.47343 * 239.99227 * 2 1 3 28 28 H 1.09010 * 109.46628 * 119.99782 * 2 1 3 29 29 H 1.08992 * 109.47346 * 179.16691 * 4 3 2 30 30 H 1.09003 * 109.46843 * 299.16680 * 4 3 2 31 31 H 0.97005 * 119.99904 * 2.52712 * 5 4 3 32 32 H 1.09004 * 109.46744 * 296.34188 * 10 8 6 33 33 H 1.08999 * 109.47241 * 56.34389 * 10 8 6 34 34 H 1.09007 * 109.47165 * 176.34155 * 10 8 6 35 35 H 0.97001 * 120.00224 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.46853 * 59.99581 * 19 3 2 37 37 H 1.09002 * 109.46639 * 300.00231 * 19 3 2 38 38 H 1.08998 * 109.46896 * 299.99670 * 20 19 3 39 39 H 1.09000 * 109.47178 * 179.97438 * 20 19 3 40 40 H 1.08998 * 109.47436 * 60.00028 * 21 20 19 41 41 H 1.09007 * 109.47398 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47194 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.47137 * 300.00418 * 22 21 20 44 44 H 1.08998 * 109.47742 * 59.99632 * 23 22 21 45 45 H 1.09000 * 109.47337 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5542 2.1553 1.2636 5 7 2.0488 1.4450 2.4456 6 6 1.7022 1.8653 3.6783 7 8 0.9805 2.8313 3.8091 8 6 2.2104 1.1344 4.8943 9 1 3.3001 1.1596 4.9042 10 6 1.7344 -0.3190 4.8518 11 6 1.6808 1.7999 6.1383 12 1 0.6955 2.2422 6.1364 13 6 2.4540 1.8441 7.2790 14 7 1.9931 2.4279 8.3636 15 14 4.1562 1.0746 7.2840 16 1 5.1542 2.0779 6.8337 17 1 4.4921 0.6248 8.6587 18 1 4.1754 -0.0904 6.3634 19 6 1.5062 2.1721 -1.2344 20 6 2.0168 3.6144 -1.2348 21 6 3.5464 3.6139 -1.2645 22 6 4.0803 2.8843 -0.0301 23 6 3.5698 1.4420 -0.0297 24 1 -0.3634 0.5933 0.8391 25 1 -0.3633 0.4302 -0.9334 26 1 -0.3634 -1.0233 0.0941 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5139 0.8901 29 1 1.9299 3.1784 1.2708 30 1 0.4644 2.1683 1.2771 31 1 2.6258 0.6723 2.3410 32 1 0.6461 -0.3466 4.9073 33 1 2.0626 -0.7818 3.9211 34 1 2.1553 -0.8641 5.6967 35 1 2.5370 2.4586 9.1663 36 1 0.4164 2.1720 -1.2134 37 1 1.8523 1.6642 -2.1346 38 1 1.6710 4.1224 -0.3346 39 1 1.6369 4.1341 -2.1143 40 1 3.8922 3.1058 -2.1647 41 1 3.9103 4.6414 -1.2643 42 1 5.1701 2.8835 -0.0515 43 1 3.7345 3.3923 0.8701 44 1 3.9155 0.9339 -0.9299 45 1 3.9497 0.9223 0.8499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597511283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:25 Heat of formation + Delta-G solvation = -75.544372 kcal Electronic energy + Delta-G solvation = -21915.123763 eV Core-core repulsion = 18930.977328 eV Total energy + Delta-G solvation = -2984.146435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27825 -38.28601 -34.68025 -33.59233 -32.94154 -31.20642 -30.79831 -29.18889 -26.05824 -25.19304 -24.03829 -22.68537 -22.04865 -20.62881 -19.26280 -18.35137 -16.97965 -16.20814 -15.67467 -15.30021 -15.04691 -14.35716 -14.26988 -14.01691 -13.75363 -13.42638 -13.33076 -12.91983 -12.65715 -12.50485 -12.22668 -12.16878 -11.91207 -11.67583 -11.49306 -11.29898 -11.14905 -11.13376 -11.08082 -10.71609 -10.65974 -10.26171 -10.18888 -10.02158 -9.96728 -9.76607 -9.11141 -8.62083 -8.50422 -8.32817 -6.02635 -4.01700 3.26243 3.33108 3.35559 3.74186 3.94687 4.41315 4.50315 4.56844 4.62401 4.92749 5.05752 5.14494 5.21667 5.28163 5.28517 5.35965 5.45182 5.53201 5.55538 5.65061 5.68533 5.84282 5.88933 5.93695 5.95865 5.98424 6.05614 6.08555 6.15096 6.18228 6.19222 6.25403 6.28220 6.38153 6.43787 6.51528 6.57784 6.87564 7.13864 7.22107 7.60644 8.25745 8.60188 9.13379 9.26790 9.57275 11.10832 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.005251 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.056253 B = 5331.426656 C = 5624.723316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.068 4.068 4 C 0.126 3.874 5 N -0.745 5.745 6 C 0.518 3.482 7 O -0.532 6.532 8 C -0.005 4.005 9 H 0.052 0.948 10 C -0.133 4.133 11 C -0.492 4.492 12 H 0.085 0.915 13 C 0.070 3.930 14 N -0.897 5.897 15 Si 0.871 3.129 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.104 4.104 20 C -0.126 4.126 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.107 4.107 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.391 0.609 32 H 0.051 0.949 33 H 0.025 0.975 34 H 0.053 0.947 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -4.564 -21.430 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.068 4.068 4 C 0.002 3.998 5 N -0.400 5.400 6 C 0.306 3.694 7 O -0.406 6.406 8 C -0.027 4.027 9 H 0.070 0.930 10 C -0.191 4.191 11 C -0.531 4.531 12 H 0.103 0.897 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.698 3.302 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.142 4.142 20 C -0.163 4.163 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.145 4.145 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.226 0.774 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.885 -3.787 -21.108 21.638 hybrid contribution 1.278 -0.729 0.078 1.473 sum 4.163 -4.517 -21.029 21.908 Atomic orbital electron populations 1.21876 0.95737 1.01650 1.02090 1.21551 0.96300 0.95382 1.01774 1.20814 0.95487 0.95472 0.95076 1.21387 0.98921 0.95834 0.83631 1.46360 1.53939 1.34000 1.05749 1.21643 0.79573 0.84293 0.83843 1.90579 1.36346 1.27413 1.86312 1.19312 0.97235 0.93315 0.92811 0.93037 1.21960 1.01395 0.96862 0.98925 1.20762 1.04454 1.35613 0.92233 0.89676 1.25026 0.97666 0.94865 0.95571 1.69888 1.37642 1.43668 1.02284 0.86973 0.85450 0.80288 0.77496 1.20288 1.21286 1.18776 1.21561 1.00527 0.95333 0.96798 1.21619 0.95740 0.96873 1.02099 1.21507 0.95677 1.00108 0.98100 1.21591 0.99913 0.95913 0.98809 1.21569 0.94238 0.96999 1.01682 0.91897 0.92759 0.93010 0.92130 0.91745 0.91751 0.91925 0.77418 0.92998 0.95621 0.92782 0.92637 0.91484 0.91879 0.91340 0.92224 0.92365 0.92307 0.92228 0.91180 0.92020 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.18 37.15 0.34 -1.27 16 2 C -0.11 -1.12 4.82 -26.74 -0.13 -1.24 16 3 C -0.07 -0.72 0.30 -154.51 -0.05 -0.76 16 4 C 0.13 1.81 3.53 -4.04 -0.01 1.79 16 5 N -0.74 -12.27 4.82 -60.30 -0.29 -12.56 16 6 C 0.52 11.53 7.15 -10.99 -0.08 11.45 16 7 O -0.53 -14.12 15.76 5.55 0.09 -14.04 16 8 C 0.00 -0.11 2.20 -92.93 -0.20 -0.32 16 9 H 0.05 1.18 5.50 -51.93 -0.29 0.89 16 10 C -0.13 -2.68 9.00 37.16 0.33 -2.34 16 11 C -0.49 -14.31 8.38 -34.44 -0.29 -14.60 16 12 H 0.09 2.82 7.59 -52.49 -0.40 2.42 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 15 Si 0.87 21.10 26.61 -169.99 -4.52 16.57 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.26 -5.85 6.34 56.52 0.36 -5.49 16 19 C -0.10 -0.97 4.35 -26.73 -0.12 -1.09 16 20 C -0.13 -1.20 5.65 -26.74 -0.15 -1.36 16 21 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 22 C -0.12 -1.32 5.65 -26.73 -0.15 -1.47 16 23 C -0.11 -1.08 4.57 -26.73 -0.12 -1.20 16 24 H 0.06 0.78 6.22 -51.93 -0.32 0.45 16 25 H 0.05 0.49 6.71 -51.93 -0.35 0.15 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.68 6.83 -51.92 -0.35 0.32 16 29 H 0.06 1.00 4.81 -51.93 -0.25 0.75 16 30 H 0.06 0.98 6.39 -51.93 -0.33 0.64 16 31 H 0.39 5.52 5.54 -40.82 -0.23 5.30 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.02 0.41 7.46 -51.93 -0.39 0.02 16 34 H 0.05 1.10 7.34 -51.93 -0.38 0.72 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.07 0.63 6.53 -51.93 -0.34 0.29 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.76 6.45 -51.93 -0.33 0.42 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.89 6.41 -51.93 -0.33 0.56 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.66 6.86 -51.93 -0.36 0.31 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -32.69 330.08 -7.49 -40.19 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.63 Total: 3.75 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.88 Total: -11.70 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.48 Total: -39.75 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.09 Total: -14.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.52 Total: 16.57 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.69 -7.49 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597511283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.358 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds