Wall clock time and date at job start Mon Mar 30 2020 08:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47595 * 2 1 4 4 C 1.52997 * 109.47512 * 61.16497 * 3 2 1 5 5 N 1.46500 * 109.46939 * 59.16298 * 4 3 2 6 6 C 1.34774 * 119.99844 * 182.51807 * 5 4 3 7 7 O 1.21286 * 120.00286 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99960 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.46862 * 60.00454 * 8 6 5 10 10 C 1.52998 * 109.47571 * 300.00861 * 8 6 5 11 11 C 1.50700 * 109.47458 * 180.02562 * 8 6 5 12 12 H 1.07999 * 119.99807 * 34.30174 * 11 8 6 13 13 C 1.37877 * 120.00381 * 214.30896 * 11 8 6 14 14 N 1.31513 * 120.00176 * 179.82303 * 13 11 8 15 15 Si 1.86800 * 120.00043 * 359.81653 * 13 11 8 16 16 H 1.48505 * 109.46928 * 88.66965 * 15 13 11 17 17 H 1.48491 * 109.47486 * 208.67197 * 15 13 11 18 18 H 1.48503 * 109.46901 * 328.67185 * 15 13 11 19 19 C 1.53005 * 109.46896 * 301.16711 * 3 2 1 20 20 C 1.52997 * 109.47234 * 180.02562 * 19 3 2 21 21 C 1.52993 * 109.47216 * 59.99973 * 20 19 3 22 22 C 1.53002 * 109.47161 * 299.99793 * 21 20 19 23 23 C 1.52995 * 109.47046 * 60.00360 * 22 21 20 24 24 H 1.09000 * 109.47314 * 305.26326 * 1 2 3 25 25 H 1.09005 * 109.46615 * 65.25718 * 1 2 3 26 26 H 1.09002 * 109.47501 * 185.25501 * 1 2 3 27 27 H 1.09004 * 109.47343 * 239.99227 * 2 1 3 28 28 H 1.09010 * 109.46628 * 119.99782 * 2 1 3 29 29 H 1.08992 * 109.47346 * 179.16691 * 4 3 2 30 30 H 1.09003 * 109.46843 * 299.16680 * 4 3 2 31 31 H 0.97005 * 119.99904 * 2.52712 * 5 4 3 32 32 H 1.09004 * 109.46744 * 296.34188 * 10 8 6 33 33 H 1.08999 * 109.47241 * 56.34389 * 10 8 6 34 34 H 1.09007 * 109.47165 * 176.34155 * 10 8 6 35 35 H 0.97001 * 120.00224 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.46853 * 59.99581 * 19 3 2 37 37 H 1.09002 * 109.46639 * 300.00231 * 19 3 2 38 38 H 1.08998 * 109.46896 * 299.99670 * 20 19 3 39 39 H 1.09000 * 109.47178 * 179.97438 * 20 19 3 40 40 H 1.08998 * 109.47436 * 60.00028 * 21 20 19 41 41 H 1.09007 * 109.47398 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47194 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.47137 * 300.00418 * 22 21 20 44 44 H 1.08998 * 109.47742 * 59.99632 * 23 22 21 45 45 H 1.09000 * 109.47337 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5542 2.1553 1.2636 5 7 2.0488 1.4450 2.4456 6 6 1.7022 1.8653 3.6783 7 8 0.9805 2.8313 3.8091 8 6 2.2104 1.1344 4.8943 9 1 3.3001 1.1596 4.9042 10 6 1.7344 -0.3190 4.8518 11 6 1.6808 1.7999 6.1383 12 1 0.6955 2.2422 6.1364 13 6 2.4540 1.8441 7.2790 14 7 1.9931 2.4279 8.3636 15 14 4.1562 1.0746 7.2840 16 1 5.1542 2.0779 6.8337 17 1 4.4921 0.6248 8.6587 18 1 4.1754 -0.0904 6.3634 19 6 1.5062 2.1721 -1.2344 20 6 2.0168 3.6144 -1.2348 21 6 3.5464 3.6139 -1.2645 22 6 4.0803 2.8843 -0.0301 23 6 3.5698 1.4420 -0.0297 24 1 -0.3634 0.5933 0.8391 25 1 -0.3633 0.4302 -0.9334 26 1 -0.3634 -1.0233 0.0941 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5139 0.8901 29 1 1.9299 3.1784 1.2708 30 1 0.4644 2.1683 1.2771 31 1 2.6258 0.6723 2.3410 32 1 0.6461 -0.3466 4.9073 33 1 2.0626 -0.7818 3.9211 34 1 2.1553 -0.8641 5.6967 35 1 2.5370 2.4586 9.1663 36 1 0.4164 2.1720 -1.2134 37 1 1.8523 1.6642 -2.1346 38 1 1.6710 4.1224 -0.3346 39 1 1.6369 4.1341 -2.1143 40 1 3.8922 3.1058 -2.1647 41 1 3.9103 4.6414 -1.2643 42 1 5.1701 2.8835 -0.0515 43 1 3.7345 3.3923 0.8701 44 1 3.9155 0.9339 -0.9299 45 1 3.9497 0.9223 0.8499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597511283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:24 Heat of formation + Delta-G solvation = -97.037922 kcal Electronic energy + Delta-G solvation = -21916.055793 eV Core-core repulsion = 18930.977328 eV Total energy + Delta-G solvation = -2985.078465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37908 -39.85490 -35.75206 -35.62345 -34.28007 -33.15772 -31.63041 -30.05969 -27.43481 -27.09933 -24.84628 -24.07541 -23.23059 -21.41638 -20.95876 -19.43956 -19.06407 -17.66680 -16.88968 -16.78490 -16.09133 -15.97013 -15.58775 -15.19138 -14.97428 -14.57527 -14.40581 -14.33296 -14.12180 -13.88126 -13.44176 -13.24626 -13.08731 -12.96313 -12.89770 -12.59009 -12.46193 -12.25714 -12.13060 -11.93817 -11.90548 -11.73413 -11.55722 -11.23842 -11.08001 -10.82415 -10.76913 -10.75717 -10.39792 -9.84562 -8.26609 -6.33455 1.35604 1.38297 1.49560 1.94707 2.35952 2.46060 3.11226 3.63736 3.74800 3.80580 4.09639 4.25392 4.27904 4.33374 4.36820 4.41379 4.50532 4.55052 4.66089 4.70025 4.72221 4.73937 4.78855 4.84578 4.89589 4.95136 5.08406 5.14511 5.16593 5.17877 5.22278 5.27160 5.31227 5.40422 5.43997 5.48144 5.51354 5.56241 5.58704 5.64294 5.69886 6.26950 6.68600 6.88987 7.28275 7.58094 8.91681 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.005251 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.056253 B = 5331.426656 C = 5624.723316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.058 4.058 4 C 0.126 3.874 5 N -0.717 5.717 6 C 0.517 3.483 7 O -0.589 6.589 8 C -0.009 4.009 9 H 0.070 0.930 10 C -0.126 4.126 11 C -0.506 4.506 12 H 0.019 0.981 13 C 0.003 3.997 14 N -0.954 5.954 15 Si 0.947 3.053 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.220 1.220 19 C -0.101 4.101 20 C -0.128 4.128 21 C -0.113 4.113 22 C -0.127 4.127 23 C -0.106 4.106 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.408 0.592 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.267 0.733 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.038 0.962 44 H 0.087 0.913 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 -7.376 -24.646 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.148 4.148 3 C -0.059 4.059 4 C 0.003 3.997 5 N -0.371 5.371 6 C 0.305 3.695 7 O -0.469 6.469 8 C -0.031 4.031 9 H 0.087 0.913 10 C -0.184 4.184 11 C -0.544 4.544 12 H 0.038 0.962 13 C -0.193 4.193 14 N -0.594 5.594 15 Si 0.769 3.231 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.142 1.142 19 C -0.139 4.139 20 C -0.165 4.165 21 C -0.150 4.150 22 C -0.164 4.164 23 C -0.143 4.143 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.246 0.754 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.105 0.895 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.615 -6.649 -24.391 25.897 hybrid contribution 0.310 0.242 1.039 1.111 sum 5.926 -6.407 -23.352 24.930 Atomic orbital electron populations 1.21868 0.96338 1.01618 1.01532 1.21573 0.95714 0.94619 1.02901 1.20779 0.96190 0.95750 0.93152 1.21515 0.97994 0.95669 0.84524 1.46013 1.52641 1.33852 1.04634 1.21449 0.79133 0.83518 0.85402 1.90564 1.39121 1.29911 1.87266 1.19303 0.97979 0.94965 0.90807 0.91256 1.21835 1.00568 0.94342 1.01685 1.20899 1.02255 1.35917 0.95335 0.96230 1.26109 1.03202 0.95380 0.94572 1.70085 1.40069 1.45887 1.03393 0.85761 0.78132 0.80643 0.78580 1.19590 1.21050 1.14197 1.21566 1.00443 0.95000 0.96895 1.21625 0.96238 0.97186 1.01462 1.21491 0.95146 1.00184 0.98221 1.21594 1.00481 0.96324 0.98049 1.21595 0.93260 0.96630 1.02851 0.94798 0.91519 0.92301 0.89495 0.92052 0.93240 0.93549 0.75396 0.94466 0.90697 0.92406 0.92466 0.91731 0.89454 0.93951 0.90892 0.90390 0.92503 0.91356 0.94311 0.89452 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.18 71.98 0.66 -2.21 16 2 C -0.11 -1.79 4.82 30.59 0.15 -1.64 16 3 C -0.06 -1.08 0.30 -52.18 -0.02 -1.09 16 4 C 0.13 3.60 3.53 86.38 0.30 3.91 16 5 N -0.72 -22.94 4.82 -463.07 -2.23 -25.17 16 6 C 0.52 23.38 7.15 87.66 0.63 24.01 16 7 O -0.59 -33.20 15.76 -3.05 -0.05 -33.25 16 8 C -0.01 -0.41 2.20 -12.29 -0.03 -0.43 16 9 H 0.07 2.97 5.50 -2.39 -0.01 2.96 16 10 C -0.13 -4.79 9.00 71.98 0.65 -4.14 16 11 C -0.51 -30.70 8.38 25.60 0.21 -30.49 16 12 H 0.02 1.39 7.59 -2.91 -0.02 1.37 16 13 C 0.00 0.20 5.47 84.65 0.46 0.67 16 14 N -0.95 -62.20 13.96 21.45 0.30 -61.90 16 15 Si 0.95 42.87 26.61 68.60 1.83 44.70 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.22 -8.37 6.34 99.48 0.63 -7.74 16 19 C -0.10 -1.61 4.35 30.59 0.13 -1.47 16 20 C -0.13 -2.24 5.65 30.59 0.17 -2.07 16 21 C -0.11 -1.83 5.92 30.59 0.18 -1.65 16 22 C -0.13 -2.41 5.65 30.59 0.17 -2.24 16 23 C -0.11 -1.75 4.57 30.59 0.14 -1.61 16 24 H 0.03 0.81 6.22 -2.39 -0.01 0.80 16 25 H 0.07 1.04 6.71 -2.38 -0.02 1.03 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.04 6.83 -2.38 -0.02 1.02 16 29 H 0.05 1.60 4.81 -2.39 -0.01 1.58 16 30 H 0.05 1.50 6.39 -2.39 -0.02 1.48 16 31 H 0.41 10.28 5.54 -92.70 -0.51 9.77 16 32 H 0.04 1.49 8.14 -2.38 -0.02 1.48 16 33 H 0.07 2.09 7.46 -2.39 -0.02 2.07 16 34 H 0.06 2.15 7.34 -2.38 -0.02 2.13 16 35 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 36 H 0.06 1.07 6.53 -2.39 -0.02 1.06 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.04 0.96 6.45 -2.39 -0.02 0.94 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.04 0.97 6.41 -2.39 -0.02 0.96 16 44 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 1.04 6.86 -2.39 -0.02 1.03 16 Total: -1.00 -78.00 330.08 4.05 -73.95 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.38 Total: 22.14 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 3.82 Total: -20.47 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -1.93 Total: -87.07 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.05 Total: -33.25 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.83 Total: 44.70 kcal Total: -78.00 4.05 -73.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597511283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.091 kcal (2) G-P(sol) polarization free energy of solvation -77.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds