Wall clock time and date at job start Mon Mar 30 2020 08:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47247 * 2 1 4 4 C 1.52998 * 109.47186 * 178.33228 * 3 2 1 5 5 N 1.46498 * 109.47146 * 59.90523 * 4 3 2 6 6 C 1.34781 * 119.99897 * 176.28634 * 5 4 3 7 7 O 1.21280 * 119.99886 * 0.28236 * 6 5 4 8 8 C 1.50693 * 119.99908 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.47784 * 300.00525 * 8 6 5 10 10 C 1.53007 * 109.47039 * 60.00379 * 8 6 5 11 11 C 1.50698 * 109.47075 * 180.02562 * 8 6 5 12 12 H 1.07998 * 120.00261 * 0.02562 * 11 8 6 13 13 C 1.37885 * 119.99890 * 180.02562 * 11 8 6 14 14 N 1.31506 * 120.00054 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99842 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46991 * 60.00026 * 15 13 11 17 17 H 1.48500 * 109.47122 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47191 * 300.00405 * 15 13 11 19 19 C 1.53001 * 109.47007 * 298.33272 * 3 2 1 20 20 C 1.52997 * 109.47216 * 179.97438 * 19 3 2 21 21 C 1.53001 * 109.47139 * 300.00022 * 20 19 3 22 22 C 1.53001 * 109.47084 * 59.99897 * 21 20 19 23 23 C 1.52997 * 109.47216 * 300.00056 * 22 21 20 24 24 H 1.09000 * 109.47109 * 299.70943 * 1 2 3 25 25 H 1.08997 * 109.47356 * 59.71140 * 1 2 3 26 26 H 1.08999 * 109.47316 * 179.70954 * 1 2 3 27 27 H 1.08995 * 109.47269 * 239.99885 * 2 1 3 28 28 H 1.09006 * 109.47022 * 119.99629 * 2 1 3 29 29 H 1.09001 * 109.47386 * 299.90570 * 4 3 2 30 30 H 1.08999 * 109.47074 * 179.90664 * 4 3 2 31 31 H 0.96996 * 119.99853 * 356.29190 * 5 4 3 32 32 H 1.09004 * 109.46992 * 60.00227 * 10 8 6 33 33 H 1.09002 * 109.47095 * 179.97438 * 10 8 6 34 34 H 1.08995 * 109.46859 * 300.00219 * 10 8 6 35 35 H 0.97003 * 120.00094 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.46892 * 300.00000 * 19 3 2 37 37 H 1.09003 * 109.47122 * 59.99937 * 19 3 2 38 38 H 1.09000 * 109.47416 * 180.02562 * 20 19 3 39 39 H 1.09003 * 109.46920 * 60.00066 * 20 19 3 40 40 H 1.08993 * 109.47385 * 299.99780 * 21 20 19 41 41 H 1.09000 * 109.47309 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.46892 * 179.97438 * 22 21 20 43 43 H 1.09003 * 109.47122 * 59.99866 * 22 21 20 44 44 H 1.09003 * 109.46920 * 299.99934 * 23 22 21 45 45 H 1.09004 * 109.47158 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5694 1.4427 0.0420 5 7 4.0902 0.7386 -1.1324 6 6 5.4195 0.6779 -1.3471 7 8 6.1845 1.2017 -0.5654 8 6 5.9552 -0.0469 -2.5548 9 1 5.6464 -1.0915 -2.5184 10 6 5.4049 0.6036 -3.8257 11 6 7.4602 0.0316 -2.5610 12 1 7.9770 0.5536 -1.7693 13 6 8.1773 -0.5632 -3.5774 14 7 7.5480 -1.1985 -4.5417 15 14 10.0428 -0.4666 -3.5847 16 1 10.5760 -1.0993 -2.3516 17 1 10.5708 -1.1807 -4.7749 18 1 10.4646 0.9564 -3.6330 19 6 1.5646 2.1515 -1.2697 20 6 2.0740 3.5942 -1.2695 21 6 1.5295 4.3271 -0.0418 22 6 2.0050 3.6181 1.2280 23 6 1.4955 2.1754 1.2277 24 1 -0.3633 0.5093 0.8926 25 1 -0.3634 0.5183 -0.8873 26 1 -0.3634 -1.0276 -0.0052 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9081 0.9390 0.9474 30 1 3.9328 2.4703 0.0403 31 1 3.4785 0.3163 -1.7555 32 1 5.7139 1.6483 -3.8622 33 1 5.7928 0.0797 -4.6993 34 1 4.3165 0.5466 -3.8209 35 1 8.0525 -1.6166 -5.2570 36 1 1.9521 1.6291 -2.1443 37 1 0.4749 2.1514 -1.2996 38 1 1.7349 4.0995 -2.1738 39 1 3.1636 3.5947 -1.2394 40 1 0.4400 4.3266 -0.0718 41 1 1.8928 5.3548 -0.0413 42 1 1.6174 4.1405 2.1026 43 1 3.0946 3.6186 1.2581 44 1 0.4059 2.1749 1.1976 45 1 1.8339 1.6705 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597511285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:27 Heat of formation + Delta-G solvation = -78.208117 kcal Electronic energy + Delta-G solvation = -21783.790558 eV Core-core repulsion = 18799.528615 eV Total energy + Delta-G solvation = -2984.261944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.20933 -38.21439 -34.45006 -33.67099 -33.08139 -30.81884 -30.52007 -29.05415 -25.87972 -25.07186 -23.65117 -22.84900 -22.06000 -20.94154 -19.24227 -18.23749 -16.25047 -15.98662 -15.49584 -15.21990 -14.75960 -14.51865 -14.37675 -14.06857 -13.94120 -13.68667 -12.84451 -12.75674 -12.55241 -12.31612 -12.22453 -12.10203 -11.81460 -11.47676 -11.35759 -11.20103 -10.99350 -10.93472 -10.69942 -10.64636 -10.62934 -10.20366 -10.09691 -9.97293 -9.95253 -9.89045 -8.93255 -8.53594 -8.27801 -8.25617 -5.98573 -4.01262 3.39193 3.41247 3.47119 3.84466 4.05093 4.51482 4.57588 4.61238 4.66162 4.96221 5.05228 5.17046 5.28566 5.34451 5.34652 5.42596 5.46854 5.53615 5.56592 5.66888 5.73669 5.88517 5.95803 5.96772 6.01522 6.03569 6.09539 6.11983 6.17341 6.26770 6.31255 6.40944 6.45346 6.53573 6.67148 6.88169 6.98715 7.22317 7.53454 7.80817 8.04802 8.22371 8.54379 9.07574 9.35244 9.64154 11.09017 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029077 B = 0.004567 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.732799 B = 6128.887476 C = 6367.863982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.067 4.067 4 C 0.128 3.872 5 N -0.743 5.743 6 C 0.518 3.482 7 O -0.549 6.549 8 C 0.029 3.971 9 H 0.050 0.950 10 C -0.131 4.131 11 C -0.499 4.499 12 H 0.073 0.927 13 C 0.058 3.942 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.108 4.108 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.105 4.105 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.393 0.607 32 H 0.030 0.970 33 H 0.092 0.908 34 H 0.011 0.989 35 H 0.260 0.740 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.972 5.781 7.329 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.067 4.067 4 C 0.004 3.996 5 N -0.398 5.398 6 C 0.307 3.693 7 O -0.426 6.426 8 C 0.008 3.992 9 H 0.068 0.932 10 C -0.189 4.189 11 C -0.538 4.538 12 H 0.091 0.909 13 C -0.143 4.143 14 N -0.537 5.537 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.145 4.145 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.163 4.163 23 C -0.143 4.143 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.228 0.772 32 H 0.049 0.951 33 H 0.111 0.889 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.351 6.062 7.738 19.078 hybrid contribution 0.660 -0.205 -0.357 0.778 sum -15.691 5.857 7.381 18.303 Atomic orbital electron populations 1.21878 0.96004 1.01354 1.01864 1.21581 0.95702 0.95585 1.02467 1.20793 0.94671 0.95228 0.96004 1.21328 0.91475 0.97580 0.89256 1.46320 1.08109 1.58335 1.27056 1.21915 0.80375 0.78992 0.87971 1.90520 1.57180 1.46838 1.48037 1.18852 0.97138 0.95318 0.87936 0.93191 1.21726 0.95356 0.99786 1.01999 1.21115 0.89634 1.33991 1.09018 0.90906 1.24947 0.98784 0.95144 0.95396 1.69861 1.35345 1.36147 1.12373 0.86520 0.85235 0.78233 0.77216 1.20235 1.21416 1.20236 1.21610 1.00347 0.95559 0.97008 1.21584 1.01614 0.95441 0.97522 1.21506 1.00242 0.98745 0.94878 1.21617 1.01562 0.95617 0.97497 1.21574 1.00498 0.95209 0.97018 0.92605 0.92479 0.93039 0.91644 0.91808 0.92792 0.91456 0.77186 0.95085 0.88941 0.97047 0.92988 0.91701 0.91773 0.92251 0.91253 0.92384 0.92372 0.92291 0.91414 0.91428 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.20 37.16 0.34 -0.99 16 2 C -0.12 -1.22 4.79 -26.73 -0.13 -1.34 16 3 C -0.07 -0.74 0.30 -154.51 -0.05 -0.79 16 4 C 0.13 1.92 3.87 -4.04 -0.02 1.90 16 5 N -0.74 -13.03 4.85 -60.30 -0.29 -13.32 16 6 C 0.52 12.00 7.15 -10.99 -0.08 11.93 16 7 O -0.55 -14.66 15.46 5.56 0.09 -14.58 16 8 C 0.03 0.72 2.64 -92.92 -0.25 0.48 16 9 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 10 C -0.13 -3.04 8.87 37.16 0.33 -2.71 16 11 C -0.50 -14.40 8.38 -34.44 -0.29 -14.69 16 12 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 13 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 14 N -0.90 -25.47 11.32 55.43 0.63 -24.84 16 15 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.11 -1.17 4.25 -26.73 -0.11 -1.28 16 20 C -0.12 -1.40 5.65 -26.73 -0.15 -1.55 16 21 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 22 C -0.13 -1.25 5.65 -26.73 -0.15 -1.40 16 23 C -0.11 -1.02 4.34 -26.73 -0.12 -1.14 16 24 H 0.05 0.45 6.41 -51.93 -0.33 0.11 16 25 H 0.06 0.48 6.45 -51.93 -0.34 0.14 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.73 6.83 -51.93 -0.35 0.38 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.09 4.81 -51.93 -0.25 0.84 16 31 H 0.39 6.12 5.60 -40.82 -0.23 5.89 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 34 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.06 0.76 6.94 -51.93 -0.36 0.40 16 37 H 0.06 0.61 6.46 -51.93 -0.34 0.28 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.78 6.43 -51.93 -0.33 0.44 16 44 H 0.07 0.59 6.40 -51.93 -0.33 0.25 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 331.67 15.07 5.00 5.00 Total: -1.00 -30.71 331.67 -8.14 -38.85 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.62 Total: 3.12 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -0.92 Total: -11.34 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.33 Total: -38.17 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.09 Total: -14.58 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.71 -8.14 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597511285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.356 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds