Wall clock time and date at job start Mon Mar 30 2020 08:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47247 * 2 1 4 4 C 1.52998 * 109.47186 * 178.33228 * 3 2 1 5 5 N 1.46498 * 109.47146 * 59.90523 * 4 3 2 6 6 C 1.34781 * 119.99897 * 176.28634 * 5 4 3 7 7 O 1.21280 * 119.99886 * 0.28236 * 6 5 4 8 8 C 1.50693 * 119.99908 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.47784 * 300.00525 * 8 6 5 10 10 C 1.53007 * 109.47039 * 60.00379 * 8 6 5 11 11 C 1.50698 * 109.47075 * 180.02562 * 8 6 5 12 12 H 1.07998 * 120.00261 * 0.02562 * 11 8 6 13 13 C 1.37885 * 119.99890 * 180.02562 * 11 8 6 14 14 N 1.31506 * 120.00054 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99842 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46991 * 60.00026 * 15 13 11 17 17 H 1.48500 * 109.47122 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47191 * 300.00405 * 15 13 11 19 19 C 1.53001 * 109.47007 * 298.33272 * 3 2 1 20 20 C 1.52997 * 109.47216 * 179.97438 * 19 3 2 21 21 C 1.53001 * 109.47139 * 300.00022 * 20 19 3 22 22 C 1.53001 * 109.47084 * 59.99897 * 21 20 19 23 23 C 1.52997 * 109.47216 * 300.00056 * 22 21 20 24 24 H 1.09000 * 109.47109 * 299.70943 * 1 2 3 25 25 H 1.08997 * 109.47356 * 59.71140 * 1 2 3 26 26 H 1.08999 * 109.47316 * 179.70954 * 1 2 3 27 27 H 1.08995 * 109.47269 * 239.99885 * 2 1 3 28 28 H 1.09006 * 109.47022 * 119.99629 * 2 1 3 29 29 H 1.09001 * 109.47386 * 299.90570 * 4 3 2 30 30 H 1.08999 * 109.47074 * 179.90664 * 4 3 2 31 31 H 0.96996 * 119.99853 * 356.29190 * 5 4 3 32 32 H 1.09004 * 109.46992 * 60.00227 * 10 8 6 33 33 H 1.09002 * 109.47095 * 179.97438 * 10 8 6 34 34 H 1.08995 * 109.46859 * 300.00219 * 10 8 6 35 35 H 0.97003 * 120.00094 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.46892 * 300.00000 * 19 3 2 37 37 H 1.09003 * 109.47122 * 59.99937 * 19 3 2 38 38 H 1.09000 * 109.47416 * 180.02562 * 20 19 3 39 39 H 1.09003 * 109.46920 * 60.00066 * 20 19 3 40 40 H 1.08993 * 109.47385 * 299.99780 * 21 20 19 41 41 H 1.09000 * 109.47309 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.46892 * 179.97438 * 22 21 20 43 43 H 1.09003 * 109.47122 * 59.99866 * 22 21 20 44 44 H 1.09003 * 109.46920 * 299.99934 * 23 22 21 45 45 H 1.09004 * 109.47158 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5694 1.4427 0.0420 5 7 4.0902 0.7386 -1.1324 6 6 5.4195 0.6779 -1.3471 7 8 6.1845 1.2017 -0.5654 8 6 5.9552 -0.0469 -2.5548 9 1 5.6464 -1.0915 -2.5184 10 6 5.4049 0.6036 -3.8257 11 6 7.4602 0.0316 -2.5610 12 1 7.9770 0.5536 -1.7693 13 6 8.1773 -0.5632 -3.5774 14 7 7.5480 -1.1985 -4.5417 15 14 10.0428 -0.4666 -3.5847 16 1 10.5760 -1.0993 -2.3516 17 1 10.5708 -1.1807 -4.7749 18 1 10.4646 0.9564 -3.6330 19 6 1.5646 2.1515 -1.2697 20 6 2.0740 3.5942 -1.2695 21 6 1.5295 4.3271 -0.0418 22 6 2.0050 3.6181 1.2280 23 6 1.4955 2.1754 1.2277 24 1 -0.3633 0.5093 0.8926 25 1 -0.3634 0.5183 -0.8873 26 1 -0.3634 -1.0276 -0.0052 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9081 0.9390 0.9474 30 1 3.9328 2.4703 0.0403 31 1 3.4785 0.3163 -1.7555 32 1 5.7139 1.6483 -3.8622 33 1 5.7928 0.0797 -4.6993 34 1 4.3165 0.5466 -3.8209 35 1 8.0525 -1.6166 -5.2570 36 1 1.9521 1.6291 -2.1443 37 1 0.4749 2.1514 -1.2996 38 1 1.7349 4.0995 -2.1738 39 1 3.1636 3.5947 -1.2394 40 1 0.4400 4.3266 -0.0718 41 1 1.8928 5.3548 -0.0413 42 1 1.6174 4.1405 2.1026 43 1 3.0946 3.6186 1.2581 44 1 0.4059 2.1749 1.1976 45 1 1.8339 1.6705 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597511285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:26 Heat of formation + Delta-G solvation = -95.875588 kcal Electronic energy + Delta-G solvation = -21784.556677 eV Core-core repulsion = 18799.528615 eV Total energy + Delta-G solvation = -2985.028063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35032 -39.86152 -35.78028 -35.58593 -34.34541 -32.49076 -31.66358 -30.08139 -27.28720 -26.98257 -24.65730 -24.07529 -23.45198 -21.76698 -21.01677 -19.30917 -18.30691 -17.70254 -16.83648 -16.45888 -16.29348 -15.99412 -15.37904 -15.14692 -15.07810 -15.01022 -14.44478 -14.29900 -13.94411 -13.42007 -13.23679 -13.06940 -12.97213 -12.92764 -12.81219 -12.68238 -12.59352 -12.21383 -12.20202 -12.05089 -12.02013 -11.85392 -11.41110 -11.07763 -10.99549 -10.82578 -10.81084 -10.59685 -10.28211 -9.86708 -8.14898 -6.25247 1.40427 1.42118 1.50761 1.96458 2.37746 2.58736 3.14384 3.65155 3.71858 3.78330 4.08862 4.25615 4.32893 4.36139 4.40044 4.53387 4.57256 4.67090 4.68287 4.72933 4.76329 4.81497 4.86145 4.91511 4.94860 5.01945 5.06148 5.15456 5.19946 5.24724 5.28266 5.32265 5.33662 5.45562 5.49149 5.53916 5.57030 5.63301 5.68238 5.76094 5.94524 6.22045 6.75476 6.87720 7.40383 7.57835 8.90732 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029077 B = 0.004567 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.732799 B = 6128.887476 C = 6367.863982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.057 4.057 4 C 0.128 3.872 5 N -0.719 5.719 6 C 0.519 3.481 7 O -0.592 6.592 8 C 0.024 3.976 9 H 0.039 0.961 10 C -0.116 4.116 11 C -0.530 4.530 12 H 0.046 0.954 13 C 0.020 3.980 14 N -0.910 5.910 15 Si 0.955 3.045 16 H -0.277 1.277 17 H -0.273 1.273 18 H -0.277 1.277 19 C -0.106 4.106 20 C -0.126 4.126 21 C -0.112 4.112 22 C -0.127 4.127 23 C -0.102 4.102 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.406 0.594 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.265 0.735 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.037 0.963 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.043 0.957 44 H 0.091 0.909 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.180 5.984 7.394 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.057 4.057 4 C 0.004 3.996 5 N -0.373 5.373 6 C 0.308 3.692 7 O -0.472 6.472 8 C 0.003 3.997 9 H 0.057 0.943 10 C -0.175 4.175 11 C -0.568 4.568 12 H 0.065 0.935 13 C -0.179 4.179 14 N -0.550 5.550 15 Si 0.781 3.219 16 H -0.202 1.202 17 H -0.198 1.198 18 H -0.202 1.202 19 C -0.143 4.143 20 C -0.163 4.163 21 C -0.150 4.150 22 C -0.164 4.164 23 C -0.139 4.139 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.243 0.757 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.616 6.253 7.789 21.126 hybrid contribution 1.316 -0.272 -0.363 1.392 sum -17.300 5.981 7.426 19.754 Atomic orbital electron populations 1.21843 0.93941 1.02049 1.02741 1.21585 0.97475 0.94604 1.01772 1.20746 0.91268 0.96323 0.97354 1.21496 0.94578 0.96164 0.87353 1.46037 1.06345 1.57140 1.27750 1.21535 0.81939 0.78689 0.87068 1.90494 1.58712 1.48834 1.49179 1.18795 0.95815 0.95158 0.89960 0.94307 1.21530 0.97648 0.98426 0.99856 1.21251 0.91774 1.34842 1.08959 0.93529 1.25594 1.02785 0.94620 0.94926 1.69937 1.36697 1.35902 1.12423 0.85658 0.80435 0.78217 0.77592 1.20249 1.19776 1.20218 1.21625 1.01747 0.94884 0.96092 1.21579 0.99646 0.96266 0.98815 1.21490 1.01301 0.98439 0.93748 1.21624 1.00141 0.96184 0.98455 1.21583 1.01718 0.94620 0.96010 0.91461 0.91771 0.92567 0.92595 0.92373 0.93950 0.92694 0.75705 0.96015 0.91047 0.93156 0.92581 0.92734 0.89318 0.91553 0.94463 0.90373 0.92319 0.90630 0.93836 0.89101 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.20 71.98 0.66 -1.41 16 2 C -0.12 -2.22 4.79 30.59 0.15 -2.07 16 3 C -0.06 -1.16 0.30 -52.18 -0.02 -1.18 16 4 C 0.13 3.86 3.87 86.38 0.33 4.20 16 5 N -0.72 -25.38 4.85 -463.07 -2.25 -27.62 16 6 C 0.52 24.71 7.15 87.65 0.63 25.34 16 7 O -0.59 -32.93 15.46 -3.03 -0.05 -32.97 16 8 C 0.02 1.24 2.64 -12.29 -0.03 1.20 16 9 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 10 C -0.12 -5.43 8.87 71.98 0.64 -4.79 16 11 C -0.53 -31.48 8.38 25.60 0.21 -31.27 16 12 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 13 C 0.02 1.13 5.30 84.66 0.45 1.58 16 14 N -0.91 -51.78 11.32 21.45 0.24 -51.54 16 15 Si 0.96 45.72 29.54 68.60 2.03 47.74 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 C -0.11 -2.06 4.25 30.59 0.13 -1.93 16 20 C -0.13 -2.66 5.65 30.59 0.17 -2.48 16 21 C -0.11 -1.94 5.92 30.60 0.18 -1.76 16 22 C -0.13 -2.30 5.65 30.59 0.17 -2.13 16 23 C -0.10 -1.72 4.34 30.59 0.13 -1.59 16 24 H 0.07 0.80 6.41 -2.39 -0.02 0.79 16 25 H 0.06 0.82 6.45 -2.39 -0.02 0.80 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 1.16 6.83 -2.39 -0.02 1.14 16 28 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.85 4.81 -2.39 -0.01 1.84 16 31 H 0.41 12.32 5.60 -92.71 -0.52 11.80 16 32 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 34 H 0.05 1.89 7.56 -2.39 -0.02 1.87 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.05 1.17 6.94 -2.39 -0.02 1.15 16 37 H 0.09 1.34 6.46 -2.39 -0.02 1.32 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.04 1.02 6.43 -2.39 -0.02 1.01 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.04 1.00 6.43 -2.39 -0.02 0.98 16 44 H 0.09 1.19 6.40 -2.39 -0.02 1.17 16 45 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -67.67 331.67 4.24 -63.44 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.45 Total: 19.24 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 3.81 Total: -18.29 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -2.01 Total: -79.16 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.05 Total: -32.97 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -67.67 4.24 -63.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597511285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.438 kcal (2) G-P(sol) polarization free energy of solvation -67.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds