Wall clock time and date at job start Mon Mar 30 2020 07:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.46925 * 2 1 4 4 C 1.50706 * 109.47438 * 119.99891 * 2 1 3 5 5 H 1.07998 * 119.99823 * 120.00131 * 4 2 1 6 6 C 1.37879 * 119.99661 * 300.00351 * 4 2 1 7 7 N 1.31514 * 119.99818 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00153 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46918 * 90.00526 * 8 6 4 10 10 H 1.48498 * 109.46954 * 210.00055 * 8 6 4 11 11 H 1.48497 * 109.47283 * 330.00509 * 8 6 4 12 12 C 1.50701 * 109.47351 * 239.99983 * 2 1 3 13 13 O 1.21277 * 120.00058 * 239.99586 * 12 2 1 14 14 N 1.34776 * 119.99804 * 59.99602 * 12 2 1 15 15 C 1.46505 * 119.99811 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.46675 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.47571 * 60.00413 * 16 15 14 18 18 C 1.53008 * 109.46896 * 180.02562 * 16 15 14 19 19 C 1.52996 * 109.47409 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46972 * 300.00085 * 19 18 16 21 21 C 1.52997 * 109.46817 * 299.99733 * 20 19 18 22 22 C 1.53000 * 109.47233 * 59.99538 * 20 19 18 23 23 C 1.52993 * 109.47469 * 299.99815 * 16 15 14 24 24 H 1.09004 * 109.46672 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47340 * 299.99692 * 1 2 3 26 26 H 1.08992 * 109.47718 * 60.00121 * 1 2 3 27 27 H 0.96998 * 119.99862 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99721 * 0.02562 * 14 12 2 29 29 H 1.08992 * 109.46821 * 60.00289 * 15 14 12 30 30 H 1.09001 * 109.46919 * 300.00003 * 15 14 12 31 31 H 1.08992 * 109.47457 * 179.97438 * 17 16 15 32 32 H 1.08996 * 109.46524 * 299.99684 * 17 16 15 33 33 H 1.09001 * 109.46962 * 59.99521 * 17 16 15 34 34 H 1.09004 * 109.46943 * 59.99548 * 18 16 15 35 35 H 1.09001 * 109.46630 * 299.99857 * 18 16 15 36 36 H 1.08996 * 109.47452 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.47054 * 59.99785 * 19 18 16 38 38 H 1.09002 * 109.47070 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.47153 * 60.00231 * 21 20 19 40 40 H 1.08998 * 109.47533 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47853 * 300.00202 * 21 20 19 42 42 H 1.09004 * 109.46724 * 60.00652 * 22 20 19 43 43 H 1.09001 * 109.47194 * 179.97438 * 22 20 19 44 44 H 1.09000 * 109.47250 * 300.00382 * 23 16 15 45 45 H 1.09004 * 109.46862 * 60.00359 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1381 -0.8589 3.5566 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9953 3.9070 11 1 0.8489 2.1772 1.4922 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6964 -1.1192 14 7 1.7067 -0.2500 -2.4545 15 6 2.1946 -0.9409 -3.6507 16 6 1.6851 -0.2192 -4.8999 17 6 2.1962 1.2229 -4.8999 18 6 2.1942 -0.9412 -6.1492 19 6 1.6853 -0.2192 -7.3985 20 6 0.1553 -0.2170 -7.3985 21 6 -0.3567 -1.6588 -7.3986 22 6 -0.3538 0.5048 -6.1492 23 6 0.1552 -0.2182 -4.9000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.9034 -0.5277 4.4375 28 1 1.1493 0.5389 -2.5435 29 1 1.8309 -1.9684 -3.6505 30 1 3.2846 -0.9413 -3.6509 31 1 1.8336 1.7369 -5.7900 32 1 1.8332 1.7370 -4.0100 33 1 3.2862 1.2221 -4.8999 34 1 1.8298 -1.9685 -6.1490 35 1 3.2842 -0.9423 -6.1493 36 1 2.0483 -0.7332 -8.2884 37 1 2.0501 0.8079 -7.3984 38 1 -0.2073 0.2977 -8.2883 39 1 0.0059 -2.1732 -6.5086 40 1 -1.4467 -1.6574 -7.3982 41 1 0.0059 -2.1732 -8.2885 42 1 0.0110 1.5320 -6.1493 43 1 -1.4438 0.5068 -6.1495 44 1 -0.2089 -1.2456 -4.9001 45 1 -0.2078 0.2959 -4.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597602330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:09 Heat of formation + Delta-G solvation = -66.681017 kcal Electronic energy + Delta-G solvation = -21584.737780 eV Core-core repulsion = 18600.975689 eV Total energy + Delta-G solvation = -2983.762091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33791 -38.60727 -35.14243 -33.77059 -32.37492 -31.09629 -30.92298 -27.72942 -27.24488 -25.17359 -25.09866 -23.04342 -22.29130 -20.32798 -19.35179 -17.77780 -16.71438 -16.44680 -15.60512 -15.38850 -15.10171 -14.82158 -14.45789 -14.23167 -13.87538 -13.42484 -13.12218 -12.99600 -12.74707 -12.33554 -12.26637 -12.23123 -12.06434 -11.95942 -11.63065 -11.54764 -11.35731 -11.04771 -10.92648 -10.86885 -10.57839 -10.30221 -10.21751 -10.09101 -10.03882 -9.60613 -9.06156 -8.63767 -8.54750 -8.42924 -6.01879 -4.01683 3.25233 3.32727 3.38268 3.66803 3.87984 4.40549 4.42778 4.47485 4.56379 4.87161 4.97598 5.02541 5.16483 5.20072 5.27713 5.36870 5.38258 5.39507 5.53011 5.59878 5.70648 5.77426 5.82366 5.83471 5.87804 5.90733 5.91840 5.99014 6.01723 6.07923 6.14488 6.18691 6.26558 6.30635 6.38060 6.43015 6.49244 6.76260 7.06593 7.20217 7.59158 8.20224 8.60068 9.15316 9.21660 9.57563 11.11260 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034709 B = 0.004293 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.512729 B = 6520.555384 C = 6799.813923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.006 4.006 3 H 0.051 0.949 4 C -0.504 4.504 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.526 3.474 13 O -0.533 6.533 14 N -0.745 5.745 15 C 0.131 3.869 16 C -0.069 4.069 17 C -0.145 4.145 18 C -0.108 4.108 19 C -0.114 4.114 20 C -0.091 4.091 21 C -0.152 4.152 22 C -0.116 4.116 23 C -0.111 4.111 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.264 0.736 28 H 0.393 0.607 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 4.905 -23.371 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.068 0.932 4 C -0.542 4.542 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.315 3.685 13 O -0.408 6.408 14 N -0.400 5.400 15 C 0.007 3.993 16 C -0.070 4.070 17 C -0.202 4.202 18 C -0.146 4.146 19 C -0.151 4.151 20 C -0.110 4.110 21 C -0.209 4.209 22 C -0.153 4.153 23 C -0.149 4.149 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.228 0.772 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.868 4.156 -23.066 23.938 hybrid contribution -0.918 1.191 0.208 1.518 sum -5.786 5.346 -22.858 24.178 Atomic orbital electron populations 1.22101 0.97424 1.01447 0.99095 1.19307 0.93133 0.97507 0.92803 0.93175 1.20959 1.31940 1.14049 0.87263 0.88910 1.24987 0.95869 0.96565 0.95771 1.69887 1.45562 1.40251 0.97839 0.86907 0.80694 0.83871 0.77012 1.20559 1.22355 1.19295 1.21229 0.78976 0.84314 0.84024 1.90576 1.37264 1.26370 1.86581 1.46281 1.55500 1.32593 1.05643 1.21234 0.98787 0.95805 0.83510 1.20759 0.95667 0.96056 0.94492 1.21973 1.01142 0.95292 1.01809 1.21550 1.00369 0.99395 0.93264 1.21583 0.95103 1.00876 0.97574 1.21085 0.95533 0.96437 0.97903 1.21950 1.00633 0.96323 1.02012 1.21620 1.00006 0.99337 0.94344 1.21640 0.94216 1.01326 0.97685 0.92399 0.93369 0.94955 0.92619 0.77227 0.92203 0.92138 0.92017 0.92534 0.92551 0.91408 0.91806 0.92215 0.91703 0.91713 0.91763 0.93016 0.93067 0.91709 0.92206 0.91395 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.57 37.15 0.32 -2.66 16 2 C -0.01 -0.14 2.23 -92.92 -0.21 -0.35 16 3 H 0.05 1.16 7.20 -51.93 -0.37 0.78 16 4 C -0.50 -14.81 8.96 -34.44 -0.31 -15.12 16 5 H 0.09 3.11 7.00 -52.49 -0.37 2.74 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 8 Si 0.88 21.55 24.37 -169.99 -4.14 17.41 16 9 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 10 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.27 -6.06 6.53 56.52 0.37 -5.69 16 12 C 0.53 11.70 7.15 -10.99 -0.08 11.62 16 13 O -0.53 -14.10 15.46 5.56 0.09 -14.01 16 14 N -0.74 -12.21 4.85 -60.30 -0.29 -12.50 16 15 C 0.13 1.85 4.56 -4.04 -0.02 1.83 16 16 C -0.07 -0.71 0.53 -154.51 -0.08 -0.79 16 17 C -0.15 -1.40 7.61 37.16 0.28 -1.12 16 18 C -0.11 -0.97 4.46 -26.73 -0.12 -1.09 16 19 C -0.11 -0.88 5.18 -26.73 -0.14 -1.02 16 20 C -0.09 -0.70 3.19 -90.62 -0.29 -0.99 16 21 C -0.15 -1.18 8.50 37.16 0.32 -0.86 16 22 C -0.12 -0.95 5.18 -26.71 -0.14 -1.09 16 23 C -0.11 -1.08 4.28 -26.71 -0.11 -1.20 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 26 H 0.03 0.53 7.56 -51.93 -0.39 0.14 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.39 5.48 5.58 -40.82 -0.23 5.25 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 32 H 0.06 0.57 6.86 -51.93 -0.36 0.22 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 45 H 0.06 0.66 6.86 -51.93 -0.36 0.30 16 LS Contribution 324.37 15.07 4.89 4.89 Total: -1.00 -32.97 324.37 -6.85 -39.82 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.49 Total: 2.57 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.67 Total: -10.88 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.48 Total: -39.79 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.09 Total: -14.01 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.97 -6.85 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597602330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.861 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds