Wall clock time and date at job start Mon Mar 30 2020 07:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.46925 * 2 1 4 4 C 1.50706 * 109.47438 * 119.99891 * 2 1 3 5 5 H 1.07998 * 119.99823 * 120.00131 * 4 2 1 6 6 C 1.37879 * 119.99661 * 300.00351 * 4 2 1 7 7 N 1.31514 * 119.99818 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00153 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46918 * 90.00526 * 8 6 4 10 10 H 1.48498 * 109.46954 * 210.00055 * 8 6 4 11 11 H 1.48497 * 109.47283 * 330.00509 * 8 6 4 12 12 C 1.50701 * 109.47351 * 239.99983 * 2 1 3 13 13 O 1.21277 * 120.00058 * 239.99586 * 12 2 1 14 14 N 1.34776 * 119.99804 * 59.99602 * 12 2 1 15 15 C 1.46505 * 119.99811 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.46675 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.47571 * 60.00413 * 16 15 14 18 18 C 1.53008 * 109.46896 * 180.02562 * 16 15 14 19 19 C 1.52996 * 109.47409 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46972 * 300.00085 * 19 18 16 21 21 C 1.52997 * 109.46817 * 299.99733 * 20 19 18 22 22 C 1.53000 * 109.47233 * 59.99538 * 20 19 18 23 23 C 1.52993 * 109.47469 * 299.99815 * 16 15 14 24 24 H 1.09004 * 109.46672 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47340 * 299.99692 * 1 2 3 26 26 H 1.08992 * 109.47718 * 60.00121 * 1 2 3 27 27 H 0.96998 * 119.99862 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99721 * 0.02562 * 14 12 2 29 29 H 1.08992 * 109.46821 * 60.00289 * 15 14 12 30 30 H 1.09001 * 109.46919 * 300.00003 * 15 14 12 31 31 H 1.08992 * 109.47457 * 179.97438 * 17 16 15 32 32 H 1.08996 * 109.46524 * 299.99684 * 17 16 15 33 33 H 1.09001 * 109.46962 * 59.99521 * 17 16 15 34 34 H 1.09004 * 109.46943 * 59.99548 * 18 16 15 35 35 H 1.09001 * 109.46630 * 299.99857 * 18 16 15 36 36 H 1.08996 * 109.47452 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.47054 * 59.99785 * 19 18 16 38 38 H 1.09002 * 109.47070 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.47153 * 60.00231 * 21 20 19 40 40 H 1.08998 * 109.47533 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47853 * 300.00202 * 21 20 19 42 42 H 1.09004 * 109.46724 * 60.00652 * 22 20 19 43 43 H 1.09001 * 109.47194 * 179.97438 * 22 20 19 44 44 H 1.09000 * 109.47250 * 300.00382 * 23 16 15 45 45 H 1.09004 * 109.46862 * 60.00359 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1381 -0.8589 3.5566 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9953 3.9070 11 1 0.8489 2.1772 1.4922 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6964 -1.1192 14 7 1.7067 -0.2500 -2.4545 15 6 2.1946 -0.9409 -3.6507 16 6 1.6851 -0.2192 -4.8999 17 6 2.1962 1.2229 -4.8999 18 6 2.1942 -0.9412 -6.1492 19 6 1.6853 -0.2192 -7.3985 20 6 0.1553 -0.2170 -7.3985 21 6 -0.3567 -1.6588 -7.3986 22 6 -0.3538 0.5048 -6.1492 23 6 0.1552 -0.2182 -4.9000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.9034 -0.5277 4.4375 28 1 1.1493 0.5389 -2.5435 29 1 1.8309 -1.9684 -3.6505 30 1 3.2846 -0.9413 -3.6509 31 1 1.8336 1.7369 -5.7900 32 1 1.8332 1.7370 -4.0100 33 1 3.2862 1.2221 -4.8999 34 1 1.8298 -1.9685 -6.1490 35 1 3.2842 -0.9423 -6.1493 36 1 2.0483 -0.7332 -8.2884 37 1 2.0501 0.8079 -7.3984 38 1 -0.2073 0.2977 -8.2883 39 1 0.0059 -2.1732 -6.5086 40 1 -1.4467 -1.6574 -7.3982 41 1 0.0059 -2.1732 -8.2885 42 1 0.0110 1.5320 -6.1493 43 1 -1.4438 0.5068 -6.1495 44 1 -0.2089 -1.2456 -4.9001 45 1 -0.2078 0.2959 -4.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597602330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:09 Heat of formation + Delta-G solvation = -88.890534 kcal Electronic energy + Delta-G solvation = -21585.700857 eV Core-core repulsion = 18600.975689 eV Total energy + Delta-G solvation = -2984.725168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31968 -40.14306 -36.30733 -35.78347 -33.80883 -32.88206 -31.66290 -28.56366 -28.08330 -27.11406 -26.22761 -24.31188 -23.45505 -21.17928 -21.02743 -18.80430 -18.51437 -17.91428 -17.04357 -16.63843 -16.25474 -16.10874 -15.69630 -15.31093 -15.15309 -14.83122 -14.45746 -14.20632 -14.01041 -13.88514 -13.44359 -13.20632 -12.96059 -12.91020 -12.78893 -12.63329 -12.56474 -12.34662 -12.18837 -12.13185 -11.72684 -11.59025 -11.46463 -11.22223 -10.97432 -10.83051 -10.76677 -10.76374 -10.42252 -9.95628 -8.26652 -6.34641 1.33546 1.40445 1.51802 1.88613 2.34822 2.41930 3.06976 3.62601 3.73074 3.82602 4.12396 4.15410 4.26628 4.30679 4.40470 4.43046 4.50411 4.59528 4.61648 4.68730 4.72136 4.72399 4.82092 4.87168 4.87979 4.96730 5.02866 5.14326 5.15920 5.19012 5.22157 5.23026 5.24724 5.33888 5.45095 5.49549 5.53490 5.57511 5.59302 5.63782 5.72702 6.27460 6.69257 6.86759 7.26999 7.52748 8.91334 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034709 B = 0.004293 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.512729 B = 6520.555384 C = 6799.813923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 H 0.069 0.931 4 C -0.522 4.522 5 H 0.027 0.973 6 C 0.005 3.995 7 N -0.954 5.954 8 Si 0.962 3.038 9 H -0.260 1.260 10 H -0.300 1.300 11 H -0.230 1.230 12 C 0.524 3.476 13 O -0.589 6.589 14 N -0.717 5.717 15 C 0.129 3.871 16 C -0.058 4.058 17 C -0.145 4.145 18 C -0.108 4.108 19 C -0.109 4.109 20 C -0.090 4.090 21 C -0.153 4.153 22 C -0.111 4.111 23 C -0.112 4.112 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.085 0.915 27 H 0.267 0.733 28 H 0.410 0.590 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 8.033 -25.963 28.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.086 0.914 4 C -0.561 4.561 5 H 0.045 0.955 6 C -0.191 4.191 7 N -0.594 5.594 8 Si 0.786 3.214 9 H -0.186 1.186 10 H -0.227 1.227 11 H -0.153 1.153 12 C 0.313 3.687 13 O -0.468 6.468 14 N -0.371 5.371 15 C 0.006 3.994 16 C -0.058 4.058 17 C -0.202 4.202 18 C -0.146 4.146 19 C -0.147 4.147 20 C -0.108 4.108 21 C -0.210 4.210 22 C -0.149 4.149 23 C -0.149 4.149 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.248 0.752 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.171 7.315 -25.733 27.697 hybrid contribution -0.114 0.088 0.977 0.987 sum -7.285 7.403 -24.756 26.847 Atomic orbital electron populations 1.22002 0.94407 1.01584 1.01525 1.19265 0.95457 0.97425 0.90950 0.91358 1.21114 1.31634 1.12821 0.90488 0.95456 1.26064 0.97486 1.00812 0.94740 1.70085 1.47687 1.42909 0.98737 0.85676 0.78733 0.78913 0.78050 1.18554 1.22738 1.15283 1.21077 0.78545 0.83631 0.85488 1.90563 1.39929 1.28860 1.87477 1.45959 1.54184 1.32461 1.04500 1.21396 0.98111 0.95686 0.84240 1.20685 0.96248 0.96247 0.92665 1.21989 1.00881 0.94549 1.02758 1.21550 1.00275 0.99288 0.93474 1.21563 0.95222 1.01086 0.96803 1.21098 0.95308 0.96222 0.98199 1.21948 1.00790 0.96576 1.01656 1.21599 1.00360 0.99479 0.93425 1.21644 0.93385 1.01180 0.98726 0.93631 0.93538 0.89668 0.92402 0.75173 0.93557 0.93452 0.89959 0.92673 0.93080 0.91945 0.92047 0.91454 0.90949 0.90472 0.92967 0.92795 0.92621 0.90806 0.91642 0.92268 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 8.57 71.98 0.62 -4.68 16 2 C -0.01 -0.43 2.23 -12.29 -0.03 -0.46 16 3 H 0.07 2.95 7.20 -2.39 -0.02 2.93 16 4 C -0.52 -31.88 8.96 25.60 0.23 -31.65 16 5 H 0.03 1.97 7.00 -2.91 -0.02 1.95 16 6 C 0.01 0.31 5.45 84.66 0.46 0.77 16 7 N -0.95 -62.12 13.96 21.45 0.30 -61.82 16 8 Si 0.96 43.42 24.37 68.60 1.67 45.09 16 9 H -0.26 -10.93 6.87 99.48 0.68 -10.25 16 10 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.23 -8.93 6.53 99.48 0.65 -8.28 16 12 C 0.52 23.48 7.15 87.66 0.63 24.11 16 13 O -0.59 -32.78 15.46 -3.02 -0.05 -32.82 16 14 N -0.72 -22.51 4.85 -463.07 -2.25 -24.76 16 15 C 0.13 3.61 4.56 86.38 0.39 4.00 16 16 C -0.06 -1.07 0.53 -52.18 -0.03 -1.10 16 17 C -0.14 -2.37 7.61 71.98 0.55 -1.82 16 18 C -0.11 -1.77 4.46 30.60 0.14 -1.63 16 19 C -0.11 -1.37 5.18 30.59 0.16 -1.21 16 20 C -0.09 -1.09 3.19 -10.79 -0.03 -1.12 16 21 C -0.15 -2.04 8.50 71.98 0.61 -1.43 16 22 C -0.11 -1.43 5.18 30.61 0.16 -1.27 16 23 C -0.11 -1.89 4.28 30.61 0.13 -1.76 16 24 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.81 3.27 -2.39 -0.01 1.80 16 26 H 0.08 2.36 7.56 -2.39 -0.02 2.34 16 27 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 28 H 0.41 10.08 5.58 -92.71 -0.52 9.57 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.04 4.81 -2.39 -0.01 1.03 16 32 H 0.05 0.92 6.86 -2.39 -0.02 0.90 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.10 6.43 -2.39 -0.02 1.08 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.82 6.43 -2.39 -0.02 0.81 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.05 0.82 4.81 -2.39 -0.01 0.81 16 40 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.84 6.43 -2.39 -0.02 0.83 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 1.12 6.43 -2.39 -0.02 1.10 16 45 H 0.06 1.06 6.86 -2.38 -0.02 1.05 16 Total: -1.00 -77.32 324.37 4.04 -73.28 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.38 Total: 20.27 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 3.98 Total: -19.25 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.95 Total: -86.57 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.05 Total: -32.82 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.67 Total: 45.09 kcal Total: -77.32 4.04 -73.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597602330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.607 kcal (2) G-P(sol) polarization free energy of solvation -77.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds