Wall clock time and date at job start Mon Mar 30 2020 07:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47551 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47392 * 59.99666 * 16 15 14 18 18 C 1.53005 * 109.46914 * 299.99536 * 16 15 14 19 19 C 1.52999 * 109.47159 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.46997 * 60.00369 * 19 18 16 21 21 C 1.52993 * 109.47481 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.46974 * 300.00013 * 20 19 18 23 23 C 1.52996 * 109.47469 * 180.02562 * 16 15 14 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 29 29 H 1.09004 * 109.46875 * 299.99676 * 15 14 12 30 30 H 1.09000 * 109.47024 * 59.99522 * 15 14 12 31 31 H 1.08996 * 109.46698 * 60.00223 * 17 16 15 32 32 H 1.09001 * 109.47142 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47097 * 300.00241 * 17 16 15 34 34 H 1.09000 * 109.47360 * 300.00175 * 18 16 15 35 35 H 1.09002 * 109.46935 * 60.00150 * 18 16 15 36 36 H 1.09000 * 109.47486 * 300.00537 * 19 18 16 37 37 H 1.09001 * 109.47362 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.46866 * 59.99788 * 20 19 18 39 39 H 1.08992 * 109.47718 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.47340 * 300.00523 * 21 20 19 41 41 H 1.09004 * 109.46672 * 59.99760 * 21 20 19 42 42 H 1.09000 * 109.47140 * 299.99606 * 22 20 19 43 43 H 1.09002 * 109.47045 * 179.97438 * 22 20 19 44 44 H 1.09004 * 109.46785 * 299.99688 * 23 16 15 45 45 H 1.09004 * 109.47694 * 59.99590 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9402 3.6508 16 6 1.6859 -0.2187 4.9000 17 6 0.1559 -0.2187 4.9005 18 6 2.1960 1.2238 4.8994 19 6 1.6859 1.9456 6.1483 20 6 2.1959 1.2248 7.3979 21 6 1.6864 1.9468 8.6469 22 6 1.6859 -0.2177 7.3985 23 6 2.1969 -0.9392 6.1492 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7089 1.1613 -3.4844 28 1 1.1494 0.5389 2.5436 29 1 1.8325 -1.9680 3.6509 30 1 3.2855 -0.9398 3.6506 31 1 -0.2073 -1.2464 4.9009 32 1 -0.2071 0.2957 5.7903 33 1 -0.2078 0.2949 4.0106 34 1 3.2860 1.2238 4.8990 35 1 1.8323 1.7374 4.0095 36 1 0.5959 1.9455 6.1484 37 1 2.0496 2.9731 6.1482 38 1 3.2859 1.2248 7.3979 39 1 2.0501 1.4337 9.5370 40 1 2.0500 2.9743 8.6463 41 1 0.5964 1.9472 8.6470 42 1 0.5959 -0.2177 7.3985 43 1 2.0496 -0.7313 8.2884 44 1 1.8339 -1.9670 6.1498 45 1 3.2869 -0.9389 6.1487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597602331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:12 Heat of formation + Delta-G solvation = -80.957413 kcal Electronic energy + Delta-G solvation = -21314.208651 eV Core-core repulsion = 18329.827489 eV Total energy + Delta-G solvation = -2984.381162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.07696 -38.39082 -35.12606 -33.66974 -32.46723 -30.90629 -30.35474 -28.28934 -26.81030 -25.08688 -24.15791 -22.97225 -22.04452 -20.49551 -19.26879 -18.47932 -16.41247 -16.12227 -15.25036 -15.14394 -14.69284 -14.53312 -14.38487 -14.19771 -13.71839 -13.60068 -13.25418 -12.78526 -12.49230 -12.36558 -12.12360 -12.02441 -11.90228 -11.48687 -11.43238 -11.32590 -11.01074 -10.96067 -10.86334 -10.69479 -10.64983 -10.24581 -10.19081 -10.17808 -10.00014 -9.89606 -8.93675 -8.54163 -8.31146 -8.26274 -5.98988 -4.01791 3.39060 3.41058 3.46927 3.83480 4.02533 4.47653 4.50048 4.54429 4.60499 4.89626 4.98701 5.08034 5.26366 5.27396 5.34168 5.38015 5.43008 5.46555 5.57135 5.63258 5.73557 5.80082 5.84755 5.91683 5.94580 5.99427 6.03814 6.06824 6.09280 6.18870 6.27991 6.30176 6.43904 6.49306 6.66558 6.87752 6.98252 7.20616 7.53006 7.80344 8.04354 8.21636 8.53488 9.07159 9.34213 9.63714 11.08667 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042905 B = 0.003750 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.454126 B = 7465.363689 C = 7691.724252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.517 3.483 13 O -0.549 6.549 14 N -0.744 5.744 15 C 0.131 3.869 16 C -0.069 4.069 17 C -0.145 4.145 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.093 4.093 21 C -0.147 4.147 22 C -0.113 4.113 23 C -0.106 4.106 24 H 0.092 0.908 25 H 0.011 0.989 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.394 0.606 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 2.986 20.846 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.068 0.932 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.307 3.693 13 O -0.425 6.425 14 N -0.399 5.399 15 C 0.006 3.994 16 C -0.070 4.070 17 C -0.202 4.202 18 C -0.147 4.147 19 C -0.152 4.152 20 C -0.111 4.111 21 C -0.205 4.205 22 C -0.151 4.151 23 C -0.144 4.144 24 H 0.111 0.889 25 H 0.030 0.970 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.229 0.771 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.954 2.368 20.605 20.763 hybrid contribution 0.041 -0.040 -0.769 0.772 sum -0.912 2.327 19.836 19.993 Atomic orbital electron populations 1.21730 0.96640 0.99733 1.00796 1.18856 0.94072 0.96775 0.89520 0.93151 1.21126 1.30881 1.12765 0.89079 0.90876 1.24948 0.95161 0.95081 0.99074 1.69866 1.37216 1.23119 1.23551 0.86515 0.79282 0.79717 0.81668 1.20222 1.21409 1.20215 1.21937 0.78497 0.84287 0.84580 1.90520 1.38116 1.27010 1.86880 1.46321 1.55394 1.32586 1.05587 1.21208 0.98577 0.95812 0.83783 1.20760 0.96165 0.95585 0.94476 1.21968 0.94303 1.02020 1.01886 1.21595 1.00801 0.94481 0.97852 1.21641 1.01008 0.98610 0.93990 1.21144 1.00308 0.94977 0.94685 1.21832 1.01103 1.00128 0.97393 1.21622 1.01013 0.95037 0.97405 1.21524 1.00712 0.98820 0.93375 0.88915 0.97038 0.95062 0.92972 0.77105 0.92369 0.92414 0.92633 0.92064 0.92381 0.91821 0.91577 0.91622 0.92192 0.91400 0.92948 0.92859 0.92809 0.91623 0.92281 0.91768 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.73 2.64 -92.92 -0.25 0.49 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.48 8.37 -34.44 -0.29 -14.77 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 12.07 7.15 -10.98 -0.08 12.00 16 13 O -0.55 -14.74 15.46 5.56 0.09 -14.65 16 14 N -0.74 -13.12 4.85 -60.30 -0.29 -13.41 16 15 C 0.13 1.97 4.56 -4.05 -0.02 1.95 16 16 C -0.07 -0.77 0.53 -154.51 -0.08 -0.85 16 17 C -0.14 -1.53 7.61 37.16 0.28 -1.25 16 18 C -0.11 -1.17 4.56 -26.73 -0.12 -1.29 16 19 C -0.12 -1.02 4.93 -26.73 -0.13 -1.16 16 20 C -0.09 -0.76 2.72 -90.62 -0.25 -1.00 16 21 C -0.15 -1.05 9.19 37.15 0.34 -0.71 16 22 C -0.11 -0.94 4.93 -26.71 -0.13 -1.07 16 23 C -0.11 -1.03 4.73 -26.71 -0.13 -1.15 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 25 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 28 H 0.39 6.14 5.58 -40.82 -0.23 5.91 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.56 4.81 -51.93 -0.25 0.31 16 33 H 0.06 0.66 6.86 -51.93 -0.36 0.30 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.75 6.86 -51.93 -0.36 0.40 16 36 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -30.90 338.23 -8.09 -38.99 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.97 Total: 1.76 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.61 Total: -10.01 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.33 Total: -38.32 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.90 -8.09 -38.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597602331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.969 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds