Wall clock time and date at job start Mon Mar 30 2020 07:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47551 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47392 * 59.99666 * 16 15 14 18 18 C 1.53005 * 109.46914 * 299.99536 * 16 15 14 19 19 C 1.52999 * 109.47159 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.46997 * 60.00369 * 19 18 16 21 21 C 1.52993 * 109.47481 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.46974 * 300.00013 * 20 19 18 23 23 C 1.52996 * 109.47469 * 180.02562 * 16 15 14 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 29 29 H 1.09004 * 109.46875 * 299.99676 * 15 14 12 30 30 H 1.09000 * 109.47024 * 59.99522 * 15 14 12 31 31 H 1.08996 * 109.46698 * 60.00223 * 17 16 15 32 32 H 1.09001 * 109.47142 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47097 * 300.00241 * 17 16 15 34 34 H 1.09000 * 109.47360 * 300.00175 * 18 16 15 35 35 H 1.09002 * 109.46935 * 60.00150 * 18 16 15 36 36 H 1.09000 * 109.47486 * 300.00537 * 19 18 16 37 37 H 1.09001 * 109.47362 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.46866 * 59.99788 * 20 19 18 39 39 H 1.08992 * 109.47718 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.47340 * 300.00523 * 21 20 19 41 41 H 1.09004 * 109.46672 * 59.99760 * 21 20 19 42 42 H 1.09000 * 109.47140 * 299.99606 * 22 20 19 43 43 H 1.09002 * 109.47045 * 179.97438 * 22 20 19 44 44 H 1.09004 * 109.46785 * 299.99688 * 23 16 15 45 45 H 1.09004 * 109.47694 * 59.99590 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9402 3.6508 16 6 1.6859 -0.2187 4.9000 17 6 0.1559 -0.2187 4.9005 18 6 2.1960 1.2238 4.8994 19 6 1.6859 1.9456 6.1483 20 6 2.1959 1.2248 7.3979 21 6 1.6864 1.9468 8.6469 22 6 1.6859 -0.2177 7.3985 23 6 2.1969 -0.9392 6.1492 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7089 1.1613 -3.4844 28 1 1.1494 0.5389 2.5436 29 1 1.8325 -1.9680 3.6509 30 1 3.2855 -0.9398 3.6506 31 1 -0.2073 -1.2464 4.9009 32 1 -0.2071 0.2957 5.7903 33 1 -0.2078 0.2949 4.0106 34 1 3.2860 1.2238 4.8990 35 1 1.8323 1.7374 4.0095 36 1 0.5959 1.9455 6.1484 37 1 2.0496 2.9731 6.1482 38 1 3.2859 1.2248 7.3979 39 1 2.0501 1.4337 9.5370 40 1 2.0500 2.9743 8.6463 41 1 0.5964 1.9472 8.6470 42 1 0.5959 -0.2177 7.3985 43 1 2.0496 -0.7313 8.2884 44 1 1.8339 -1.9670 6.1498 45 1 3.2869 -0.9389 6.1487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597602331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:11 Heat of formation + Delta-G solvation = -98.483492 kcal Electronic energy + Delta-G solvation = -21314.968639 eV Core-core repulsion = 18329.827489 eV Total energy + Delta-G solvation = -2985.141150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17402 -39.97170 -36.29755 -35.75291 -33.80588 -32.31769 -31.66328 -29.11416 -27.93587 -27.17950 -25.26849 -24.05531 -23.44972 -21.28756 -21.02791 -19.34248 -18.36058 -17.90833 -16.81611 -16.47872 -16.20746 -15.86959 -15.45860 -15.12185 -14.82975 -14.74434 -14.56331 -14.22533 -14.06928 -13.51360 -13.13961 -13.09572 -12.97569 -12.78838 -12.71969 -12.68162 -12.59175 -12.26729 -12.19804 -12.13741 -12.00302 -11.77718 -11.66186 -11.07155 -11.01073 -10.97455 -10.78297 -10.59706 -10.28329 -9.91500 -8.15123 -6.25656 1.40624 1.42345 1.50947 1.95422 2.37186 2.57298 3.14228 3.62223 3.71645 3.80001 4.10172 4.21948 4.26223 4.36813 4.43398 4.52471 4.60594 4.67174 4.73185 4.74030 4.79190 4.88114 4.90296 4.93284 4.95651 5.02534 5.09648 5.11180 5.17283 5.20949 5.24208 5.25830 5.33524 5.48199 5.49656 5.51449 5.56191 5.64559 5.71949 5.75642 5.94455 6.21906 6.74953 6.87160 7.40092 7.56791 8.90576 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042905 B = 0.003750 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.454126 B = 7465.363689 C = 7691.724252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.040 0.960 4 C -0.532 4.532 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.518 3.482 13 O -0.591 6.591 14 N -0.720 5.720 15 C 0.130 3.870 16 C -0.059 4.059 17 C -0.144 4.144 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.092 4.092 21 C -0.145 4.145 22 C -0.108 4.108 23 C -0.105 4.105 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.022 0.978 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 3.624 22.364 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.058 0.942 4 C -0.570 4.570 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.307 3.693 13 O -0.471 6.471 14 N -0.374 5.374 15 C 0.006 3.994 16 C -0.059 4.059 17 C -0.201 4.201 18 C -0.148 4.148 19 C -0.148 4.148 20 C -0.110 4.110 21 C -0.202 4.202 22 C -0.146 4.146 23 C -0.143 4.143 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.244 0.756 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.784 3.046 22.163 22.443 hybrid contribution 0.308 -0.213 -1.203 1.260 sum -1.476 2.833 20.960 21.202 Atomic orbital electron populations 1.21541 0.95023 0.99348 1.01659 1.18799 0.95360 0.95837 0.89716 0.94240 1.21278 1.31704 1.12783 0.91254 0.93452 1.25596 0.95175 0.95749 1.01395 1.69942 1.37166 1.23520 1.24379 0.85653 0.78662 0.78741 0.78834 1.20174 1.19796 1.20213 1.21562 0.78262 0.83710 0.85768 1.90496 1.40153 1.28840 1.87644 1.46040 1.54139 1.32404 1.04789 1.21392 0.98001 0.95763 0.84265 1.20693 0.96715 0.95574 0.92945 1.21976 0.93437 1.02113 1.02554 1.21592 1.00365 0.94165 0.98667 1.21614 1.01309 0.98635 0.93221 1.21135 1.00069 0.94969 0.94864 1.21801 1.01341 1.00144 0.96901 1.21598 1.01292 0.94905 0.96774 1.21523 1.00568 0.98955 0.93293 0.91042 0.93069 0.95926 0.92561 0.75574 0.93273 0.93527 0.92859 0.90017 0.93091 0.92613 0.92445 0.90974 0.91764 0.91890 0.92354 0.92664 0.92388 0.91036 0.91225 0.91652 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.87 71.98 0.64 -4.81 16 2 C 0.02 1.24 2.64 -12.28 -0.03 1.21 16 3 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.53 -31.55 8.37 25.60 0.21 -31.34 16 5 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -51.75 11.32 21.45 0.24 -51.51 16 8 Si 0.96 45.61 29.54 68.60 2.03 47.63 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 C 0.52 24.56 7.15 87.66 0.63 25.19 16 13 O -0.59 -32.71 15.46 -3.03 -0.05 -32.76 16 14 N -0.72 -25.19 4.85 -463.07 -2.25 -27.44 16 15 C 0.13 3.88 4.56 86.38 0.39 4.27 16 16 C -0.06 -1.22 0.53 -52.18 -0.03 -1.25 16 17 C -0.14 -2.73 7.61 71.98 0.55 -2.18 16 18 C -0.11 -2.19 4.56 30.60 0.14 -2.05 16 19 C -0.11 -1.71 4.93 30.60 0.15 -1.55 16 20 C -0.09 -1.27 2.72 -10.79 -0.03 -1.30 16 21 C -0.14 -1.65 9.19 71.98 0.66 -0.99 16 22 C -0.11 -1.50 4.93 30.61 0.15 -1.35 16 23 C -0.11 -1.86 4.73 30.61 0.14 -1.71 16 24 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 25 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 26 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.41 12.20 5.58 -92.71 -0.52 11.68 16 29 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.24 4.81 -2.39 -0.01 1.23 16 33 H 0.05 1.04 6.86 -2.39 -0.02 1.02 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.23 6.86 -2.39 -0.02 1.21 16 36 H 0.07 1.04 6.43 -2.39 -0.02 1.02 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 0.93 6.43 -2.39 -0.02 0.92 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -67.04 338.23 4.44 -62.60 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.43 Total: 17.77 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 4.03 Total: -16.30 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -2.00 Total: -78.94 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.05 Total: -32.76 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -67.04 4.44 -62.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597602331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.885 kcal (2) G-P(sol) polarization free energy of solvation -67.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds