Wall clock time and date at job start Mon Mar 30 2020 07:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.47129 * 2 1 4 4 C 1.53001 * 109.47438 * 119.99714 * 2 1 3 5 5 C 1.50695 * 109.47256 * 300.00484 * 4 2 1 6 6 H 1.08004 * 119.99932 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00045 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99949 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00200 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47359 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.47145 * 300.00486 * 9 7 5 12 12 H 1.48501 * 109.46867 * 60.00110 * 9 7 5 13 13 C 1.53004 * 109.47396 * 240.00137 * 2 1 3 14 14 N 1.46502 * 109.46737 * 59.99610 * 13 2 1 15 15 C 1.34781 * 119.99882 * 180.02562 * 14 13 2 16 16 O 1.21284 * 119.99825 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00344 * 180.02562 * 15 14 13 18 18 H 1.09003 * 112.85106 * 273.32373 * 17 15 14 19 19 C 1.53785 * 113.61395 * 44.51614 * 17 15 14 20 20 C 1.53773 * 87.08258 * 139.98253 * 19 17 15 21 21 C 1.53780 * 87.08325 * 334.56791 * 20 19 17 22 22 C 1.53005 * 113.61502 * 270.88568 * 21 20 19 23 23 C 1.52999 * 113.61607 * 139.97864 * 21 20 19 24 24 H 1.09001 * 109.47180 * 299.99916 * 1 2 3 25 25 H 1.09002 * 109.47565 * 59.99663 * 1 2 3 26 26 H 1.08996 * 109.47631 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47309 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46997 * 300.00053 * 3 2 1 29 29 H 1.09001 * 109.47021 * 59.99987 * 3 2 1 30 30 H 1.08995 * 109.47061 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.46322 * 60.00150 * 4 2 1 32 32 H 0.96996 * 119.99871 * 359.97438 * 8 7 5 33 33 H 1.08995 * 109.47555 * 179.97438 * 13 2 1 34 34 H 1.08996 * 109.46695 * 300.00530 * 13 2 1 35 35 H 0.96993 * 120.00385 * 0.02562 * 14 13 2 36 36 H 1.08999 * 113.61093 * 254.53480 * 19 17 15 37 37 H 1.08996 * 113.61327 * 25.43136 * 19 17 15 38 38 H 1.08998 * 113.61368 * 89.11637 * 20 19 17 39 39 H 1.08998 * 113.61412 * 219.93459 * 20 19 17 40 40 H 1.09002 * 109.46794 * 164.57140 * 22 21 20 41 41 H 1.08995 * 109.46706 * 284.57617 * 22 21 20 42 42 H 1.08997 * 109.47042 * 44.57541 * 22 21 20 43 43 H 1.08998 * 109.47549 * 322.50502 * 23 21 20 44 44 H 1.09002 * 109.46845 * 82.50832 * 23 21 20 45 45 H 1.09001 * 109.47012 * 202.50233 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9169 0.8675 2.3806 7 6 1.8703 -0.4821 3.7319 8 7 2.6266 -1.5514 3.8526 9 14 1.2482 0.3987 5.2571 10 1 1.7432 -0.3013 6.4696 11 1 1.7441 1.7985 5.2572 12 1 -0.2368 0.3997 5.2571 13 6 2.0400 -0.7212 -1.2493 14 7 1.5515 -0.0306 -2.4454 15 6 1.8767 -0.4913 -3.6696 16 8 2.5733 -1.4779 -3.7809 17 6 1.3749 0.2194 -4.9000 18 1 0.3873 -0.1205 -5.2119 19 6 1.5036 1.7499 -4.8230 20 6 1.9278 1.7100 -6.3005 21 6 2.4011 0.2694 -6.0442 22 6 3.8528 0.1765 -5.5700 23 6 2.0867 -0.6923 -7.1918 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 -0.7215 1.2490 31 1 1.6766 -1.7488 1.2492 32 1 2.9499 -2.0086 3.0606 33 1 3.1299 -0.7208 -1.2495 34 1 1.6766 -1.7488 -1.2493 35 1 0.9942 0.7582 -2.3564 36 1 0.5551 2.2599 -4.6546 37 1 2.2924 2.0884 -4.1512 38 1 1.0918 1.7775 -6.9967 39 1 2.7361 2.4002 -6.5415 40 1 4.0357 -0.8133 -5.1518 41 1 4.5220 0.3439 -6.4138 42 1 4.0347 0.9328 -4.8064 43 1 1.1137 -0.4456 -7.6166 44 1 2.8529 -0.6019 -7.9619 45 1 2.0697 -1.7149 -6.8146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597656645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:03 Heat of formation + Delta-G solvation = -53.901738 kcal Electronic energy + Delta-G solvation = -21321.477487 eV Core-core repulsion = 18338.269547 eV Total energy + Delta-G solvation = -2983.207940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79423 -38.41322 -36.92321 -33.77288 -32.21838 -30.75876 -27.66303 -27.52705 -26.65768 -26.59180 -25.41136 -22.82836 -22.74380 -20.48071 -18.91953 -18.19131 -16.93625 -16.49887 -15.62410 -15.54696 -14.84229 -14.44623 -14.15865 -13.88234 -13.63531 -13.56407 -13.32660 -12.94045 -12.78285 -12.35830 -12.22859 -11.98006 -11.79016 -11.74242 -11.45711 -11.19236 -11.16818 -11.02485 -10.97055 -10.65805 -10.55195 -10.32642 -10.20687 -10.10525 -9.99514 -9.58178 -9.28119 -8.71418 -8.47035 -8.31885 -6.33240 -4.02386 2.84677 3.42684 3.44729 3.45790 3.63456 4.21831 4.30043 4.51785 4.52894 4.55390 5.05623 5.09870 5.29279 5.38585 5.40623 5.43872 5.49217 5.55170 5.57668 5.60587 5.65002 5.67206 5.77801 5.87140 5.97120 6.06256 6.09544 6.13510 6.20906 6.24760 6.31217 6.38327 6.52128 6.55115 6.73253 6.96446 6.98295 7.02492 7.34497 7.49330 7.76722 8.21725 8.46337 8.47280 8.89904 9.68691 11.06675 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.041938 B = 0.003739 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.489093 B = 7487.076610 C = 7725.625626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.126 4.126 4 C 0.023 3.977 5 C -0.592 4.592 6 H 0.053 0.947 7 C 0.013 3.987 8 N -0.914 5.914 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.289 1.289 13 C 0.127 3.873 14 N -0.721 5.721 15 C 0.518 3.482 16 O -0.544 6.544 17 C -0.129 4.129 18 H 0.116 0.884 19 C -0.135 4.135 20 C -0.133 4.133 21 C -0.059 4.059 22 C -0.138 4.138 23 C -0.136 4.136 24 H 0.068 0.932 25 H 0.030 0.970 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.269 0.731 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.398 0.602 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.353 7.354 -19.692 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.066 4.066 3 C -0.183 4.183 4 C -0.014 4.014 5 C -0.630 4.630 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.551 5.551 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C 0.004 3.996 14 N -0.372 5.372 15 C 0.304 3.696 16 O -0.422 6.422 17 C -0.150 4.150 18 H 0.133 0.867 19 C -0.173 4.173 20 C -0.171 4.171 21 C -0.059 4.059 22 C -0.195 4.195 23 C -0.193 4.193 24 H 0.087 0.913 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.233 0.767 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.821 6.601 -18.090 19.462 hybrid contribution -0.370 0.383 -1.565 1.653 sum -3.191 6.984 -19.655 21.102 Atomic orbital electron populations 1.21746 0.95112 1.01109 1.00357 1.20751 0.95571 0.95819 0.94465 1.21747 1.00396 0.95798 1.00356 1.19207 0.95627 0.95156 0.91451 1.21974 1.34872 1.14364 0.91787 0.92883 1.25789 0.95314 0.96560 1.01379 1.70774 1.32478 1.18280 1.33519 0.83583 0.75847 0.75299 0.75821 1.20879 1.21542 1.21537 1.21598 0.98736 0.95975 0.83287 1.46234 1.53160 1.32008 1.05828 1.20424 0.80373 0.84351 0.84444 1.90644 1.38192 1.26483 1.86833 1.22920 1.01185 0.96416 0.94520 0.86660 1.22914 1.02364 0.94196 0.97819 1.23026 1.01120 0.96589 0.96339 1.21628 0.95070 0.95141 0.94097 1.21760 0.93208 1.03905 1.00604 1.21728 1.00902 0.99600 0.97054 0.91311 0.95123 0.93507 0.93520 0.95114 0.91323 0.97352 0.97353 0.92075 0.92060 0.92059 0.76696 0.90688 0.89512 0.89893 0.91068 0.89954 0.92713 0.92956 0.92740 0.92539 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.05 37.15 0.30 -1.95 16 2 C -0.07 -1.26 0.54 -154.51 -0.08 -1.34 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.02 0.56 3.35 -27.88 -0.09 0.47 16 5 C -0.59 -15.90 7.65 -34.44 -0.26 -16.16 16 6 H 0.05 1.38 5.68 -52.48 -0.30 1.08 16 7 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 8 N -0.91 -27.79 13.65 55.43 0.76 -27.04 16 9 Si 1.07 24.88 29.90 -169.99 -5.08 19.80 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.13 2.27 4.57 -4.04 -0.02 2.25 16 14 N -0.72 -10.48 4.85 -60.29 -0.29 -10.77 16 15 C 0.52 7.63 6.54 -10.99 -0.07 7.56 16 16 O -0.54 -10.01 14.60 5.55 0.08 -9.93 16 17 C -0.13 -1.40 3.70 -90.96 -0.34 -1.73 16 18 H 0.12 1.11 8.10 -51.93 -0.42 0.69 16 19 C -0.14 -1.19 6.70 -25.92 -0.17 -1.37 16 20 C -0.13 -1.08 7.22 -25.92 -0.19 -1.27 16 21 C -0.06 -0.60 1.19 -153.69 -0.18 -0.78 16 22 C -0.14 -1.60 8.00 37.16 0.30 -1.30 16 23 C -0.14 -1.26 9.20 37.16 0.34 -0.92 16 24 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 25 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 29 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 30 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 31 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 32 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.40 4.97 5.70 -40.82 -0.23 4.74 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.83 7.55 -51.93 -0.39 0.44 16 38 H 0.08 0.57 7.96 -51.93 -0.41 0.16 16 39 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 40 H 0.08 1.18 6.18 -51.93 -0.32 0.85 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.62 7.31 -51.93 -0.38 0.24 16 43 H 0.05 0.43 7.94 -51.93 -0.41 0.01 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -30.82 344.40 -7.61 -38.43 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.99 Total: 2.51 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -0.27 Total: -18.18 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.46 Total: -37.81 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.82 -7.61 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597656645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.469 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds