Wall clock time and date at job start Mon Mar 30 2020 07:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.47129 * 2 1 4 4 C 1.53001 * 109.47438 * 119.99714 * 2 1 3 5 5 C 1.50695 * 109.47256 * 300.00484 * 4 2 1 6 6 H 1.08004 * 119.99932 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00045 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99949 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00200 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47359 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.47145 * 300.00486 * 9 7 5 12 12 H 1.48501 * 109.46867 * 60.00110 * 9 7 5 13 13 C 1.53004 * 109.47396 * 240.00137 * 2 1 3 14 14 N 1.46502 * 109.46737 * 59.99610 * 13 2 1 15 15 C 1.34781 * 119.99882 * 180.02562 * 14 13 2 16 16 O 1.21284 * 119.99825 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00344 * 180.02562 * 15 14 13 18 18 H 1.09003 * 112.85106 * 273.32373 * 17 15 14 19 19 C 1.53785 * 113.61395 * 44.51614 * 17 15 14 20 20 C 1.53773 * 87.08258 * 139.98253 * 19 17 15 21 21 C 1.53780 * 87.08325 * 334.56791 * 20 19 17 22 22 C 1.53005 * 113.61502 * 270.88568 * 21 20 19 23 23 C 1.52999 * 113.61607 * 139.97864 * 21 20 19 24 24 H 1.09001 * 109.47180 * 299.99916 * 1 2 3 25 25 H 1.09002 * 109.47565 * 59.99663 * 1 2 3 26 26 H 1.08996 * 109.47631 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47309 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46997 * 300.00053 * 3 2 1 29 29 H 1.09001 * 109.47021 * 59.99987 * 3 2 1 30 30 H 1.08995 * 109.47061 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.46322 * 60.00150 * 4 2 1 32 32 H 0.96996 * 119.99871 * 359.97438 * 8 7 5 33 33 H 1.08995 * 109.47555 * 179.97438 * 13 2 1 34 34 H 1.08996 * 109.46695 * 300.00530 * 13 2 1 35 35 H 0.96993 * 120.00385 * 0.02562 * 14 13 2 36 36 H 1.08999 * 113.61093 * 254.53480 * 19 17 15 37 37 H 1.08996 * 113.61327 * 25.43136 * 19 17 15 38 38 H 1.08998 * 113.61368 * 89.11637 * 20 19 17 39 39 H 1.08998 * 113.61412 * 219.93459 * 20 19 17 40 40 H 1.09002 * 109.46794 * 164.57140 * 22 21 20 41 41 H 1.08995 * 109.46706 * 284.57617 * 22 21 20 42 42 H 1.08997 * 109.47042 * 44.57541 * 22 21 20 43 43 H 1.08998 * 109.47549 * 322.50502 * 23 21 20 44 44 H 1.09002 * 109.46845 * 82.50832 * 23 21 20 45 45 H 1.09001 * 109.47012 * 202.50233 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9169 0.8675 2.3806 7 6 1.8703 -0.4821 3.7319 8 7 2.6266 -1.5514 3.8526 9 14 1.2482 0.3987 5.2571 10 1 1.7432 -0.3013 6.4696 11 1 1.7441 1.7985 5.2572 12 1 -0.2368 0.3997 5.2571 13 6 2.0400 -0.7212 -1.2493 14 7 1.5515 -0.0306 -2.4454 15 6 1.8767 -0.4913 -3.6696 16 8 2.5733 -1.4779 -3.7809 17 6 1.3749 0.2194 -4.9000 18 1 0.3873 -0.1205 -5.2119 19 6 1.5036 1.7499 -4.8230 20 6 1.9278 1.7100 -6.3005 21 6 2.4011 0.2694 -6.0442 22 6 3.8528 0.1765 -5.5700 23 6 2.0867 -0.6923 -7.1918 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 -0.7215 1.2490 31 1 1.6766 -1.7488 1.2492 32 1 2.9499 -2.0086 3.0606 33 1 3.1299 -0.7208 -1.2495 34 1 1.6766 -1.7488 -1.2493 35 1 0.9942 0.7582 -2.3564 36 1 0.5551 2.2599 -4.6546 37 1 2.2924 2.0884 -4.1512 38 1 1.0918 1.7775 -6.9967 39 1 2.7361 2.4002 -6.5415 40 1 4.0357 -0.8133 -5.1518 41 1 4.5220 0.3439 -6.4138 42 1 4.0347 0.9328 -4.8064 43 1 1.1137 -0.4456 -7.6166 44 1 2.8529 -0.6019 -7.9619 45 1 2.0697 -1.7149 -6.8146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597656645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:03 Heat of formation + Delta-G solvation = -71.973031 kcal Electronic energy + Delta-G solvation = -21322.261117 eV Core-core repulsion = 18338.269547 eV Total energy + Delta-G solvation = -2983.991570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.77844 -39.65582 -38.35576 -35.47414 -33.99503 -31.58152 -28.95293 -28.44243 -28.36137 -28.06819 -26.72554 -24.76131 -23.47473 -21.68114 -20.34912 -19.29556 -18.50939 -18.02388 -16.91426 -16.60968 -15.97962 -15.85204 -15.59121 -15.37245 -15.08719 -14.78397 -14.33581 -14.12741 -14.05323 -13.69730 -13.63306 -13.17166 -13.06491 -12.89131 -12.77096 -12.63846 -12.47870 -12.38139 -12.25312 -11.95913 -11.89328 -11.77269 -11.64553 -11.31719 -11.25996 -11.00168 -10.62524 -10.49779 -10.39825 -10.05286 -8.60615 -6.29898 1.54369 1.62870 1.67901 1.80585 2.24721 2.61094 3.22744 3.41197 3.55714 3.71886 3.82583 3.86746 3.96317 4.09368 4.16084 4.29277 4.55720 4.56938 4.60627 4.66779 4.71318 4.77294 4.82916 4.86777 4.92183 4.95984 4.97485 5.00098 5.05117 5.11353 5.23456 5.24305 5.27970 5.31184 5.32730 5.44722 5.48533 5.52420 5.56743 5.62933 6.07604 6.26240 6.60152 6.64183 7.29879 7.51335 8.79254 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.041938 B = 0.003739 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.489093 B = 7487.076610 C = 7725.625626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.059 4.059 3 C -0.120 4.120 4 C 0.024 3.976 5 C -0.589 4.589 6 H 0.066 0.934 7 C -0.047 4.047 8 N -0.947 5.947 9 Si 1.115 2.885 10 H -0.292 1.292 11 H -0.267 1.267 12 H -0.267 1.267 13 C 0.141 3.859 14 N -0.709 5.709 15 C 0.514 3.486 16 O -0.586 6.586 17 C -0.129 4.129 18 H 0.135 0.865 19 C -0.130 4.130 20 C -0.118 4.118 21 C -0.069 4.069 22 C -0.136 4.136 23 C -0.134 4.134 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.055 0.945 30 H -0.021 1.021 31 H -0.021 1.021 32 H 0.252 0.748 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.412 0.588 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 10.402 -21.479 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.059 4.059 3 C -0.177 4.177 4 C -0.013 4.013 5 C -0.627 4.627 6 H 0.084 0.916 7 C -0.243 4.243 8 N -0.586 5.586 9 Si 0.936 3.064 10 H -0.218 1.218 11 H -0.192 1.192 12 H -0.192 1.192 13 C 0.017 3.983 14 N -0.362 5.362 15 C 0.302 3.698 16 O -0.467 6.467 17 C -0.150 4.150 18 H 0.153 0.847 19 C -0.167 4.167 20 C -0.155 4.155 21 C -0.069 4.069 22 C -0.193 4.193 23 C -0.191 4.191 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.074 0.926 30 H -0.002 1.002 31 H -0.002 1.002 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.250 0.750 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.994 9.686 -19.913 22.700 hybrid contribution 0.355 -0.625 -1.075 1.293 sum -4.640 9.061 -20.987 23.326 Atomic orbital electron populations 1.21678 0.93409 1.00860 1.01799 1.20591 0.96812 0.96290 0.92234 1.21677 0.99698 0.94515 1.01797 1.19143 0.93799 0.94259 0.94141 1.22360 1.33800 1.14249 0.92310 0.91575 1.27371 0.94958 0.96519 1.05421 1.70918 1.34897 1.20101 1.32640 0.82963 0.76564 0.75037 0.71787 1.21763 1.19242 1.19234 1.21152 0.97459 0.95263 0.84438 1.46042 1.53206 1.32180 1.04784 1.21277 0.79353 0.83791 0.85334 1.90640 1.40058 1.28582 1.87406 1.23086 1.02002 0.97657 0.92245 0.84689 1.22938 1.03394 0.92157 0.98237 1.22988 1.01879 0.94414 0.96267 1.21734 0.93746 0.97310 0.94151 1.21704 0.95179 1.01575 1.00866 1.21720 1.02368 0.98072 0.96915 0.92539 0.90889 0.94670 0.94693 0.90866 0.92559 1.00224 1.00230 0.93910 0.94071 0.94047 0.75002 0.88168 0.90426 0.87711 0.90406 0.93408 0.91275 0.93529 0.90662 0.91782 0.94264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 2 C -0.06 -2.25 0.54 -52.18 -0.03 -2.28 16 3 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 4 C 0.02 1.23 3.35 29.85 0.10 1.33 16 5 C -0.59 -32.01 7.65 25.60 0.20 -31.82 16 6 H 0.07 3.37 5.68 -2.91 -0.02 3.36 16 7 C -0.05 -2.66 5.46 84.65 0.46 -2.20 16 8 N -0.95 -59.71 13.65 21.45 0.29 -59.41 16 9 Si 1.11 49.70 29.90 68.60 2.05 51.76 16 10 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 12 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 13 C 0.14 5.15 4.57 86.38 0.39 5.55 16 14 N -0.71 -19.64 4.85 -463.06 -2.25 -21.89 16 15 C 0.51 14.73 6.54 87.65 0.57 15.31 16 16 O -0.59 -22.25 14.60 -3.04 -0.04 -22.30 16 17 C -0.13 -2.44 3.70 -11.01 -0.04 -2.48 16 18 H 0.14 2.08 8.10 -2.39 -0.02 2.06 16 19 C -0.13 -1.76 6.70 31.12 0.21 -1.55 16 20 C -0.12 -1.42 7.22 31.12 0.22 -1.20 16 21 C -0.07 -1.25 1.19 -51.65 -0.06 -1.31 16 22 C -0.14 -3.09 8.00 71.98 0.58 -2.52 16 23 C -0.13 -2.21 9.20 71.98 0.66 -1.55 16 24 H 0.06 2.07 6.62 -2.39 -0.02 2.05 16 25 H 0.07 1.85 6.86 -2.39 -0.02 1.84 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.85 6.86 -2.39 -0.02 1.83 16 29 H 0.06 2.06 6.62 -2.39 -0.02 2.04 16 30 H -0.02 -1.16 8.01 -2.39 -0.02 -1.18 16 31 H -0.02 -1.16 8.01 -2.39 -0.02 -1.18 16 32 H 0.25 16.24 7.22 -92.71 -0.67 15.57 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.41 8.89 5.70 -92.71 -0.53 8.36 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 1.23 7.55 -2.39 -0.02 1.21 16 38 H 0.10 0.87 7.96 -2.39 -0.02 0.85 16 39 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 40 H 0.05 1.42 6.18 -2.39 -0.01 1.40 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.07 7.31 -2.39 -0.02 1.05 16 43 H 0.07 0.92 7.94 -2.39 -0.02 0.90 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -70.92 344.40 5.00 -65.92 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.52 Total: 17.62 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 4.43 Total: -31.70 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -1.95 Total: -81.30 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.04 Total: -22.30 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.05 Total: 51.76 kcal Total: -70.92 5.00 -65.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597656645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.050 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds