Wall clock time and date at job start Mon Mar 30 2020 07:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47105 * 2 1 4 4 C 1.53000 * 109.47001 * 119.99763 * 2 1 3 5 5 C 1.50700 * 109.47344 * 299.99922 * 4 2 1 6 6 H 1.07997 * 119.99713 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99693 * 180.02562 * 5 4 2 8 8 N 1.31504 * 120.00272 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99591 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47132 * 269.99868 * 9 7 5 11 11 H 1.48497 * 109.47009 * 29.99912 * 9 7 5 12 12 H 1.48501 * 109.46998 * 149.99968 * 9 7 5 13 13 C 1.52996 * 109.47006 * 239.99618 * 2 1 3 14 14 N 1.46506 * 109.47041 * 60.00084 * 13 2 1 15 15 C 1.34774 * 119.99911 * 179.97438 * 14 13 2 16 16 O 1.21281 * 120.00451 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99788 * 180.02562 * 15 14 13 18 18 H 1.09002 * 112.85055 * 78.45505 * 17 15 14 19 19 C 1.53781 * 113.61434 * 307.25904 * 17 15 14 20 20 C 1.53956 * 87.01952 * 220.04739 * 19 17 15 21 21 C 1.53779 * 87.11091 * 25.36221 * 20 19 17 22 22 C 1.53003 * 113.61368 * 220.08863 * 21 20 19 23 23 C 1.53003 * 113.61683 * 89.18640 * 21 20 19 24 24 H 1.09002 * 109.47235 * 300.00123 * 1 2 3 25 25 H 1.08999 * 109.47608 * 60.00500 * 1 2 3 26 26 H 1.09004 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47140 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47204 * 300.00027 * 3 2 1 29 29 H 1.09002 * 109.47175 * 59.99840 * 3 2 1 30 30 H 1.09001 * 109.46813 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.47196 * 60.00209 * 4 2 1 32 32 H 0.97000 * 120.00127 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47158 * 179.97438 * 13 2 1 34 34 H 1.08993 * 109.47547 * 300.00450 * 13 2 1 35 35 H 0.97005 * 119.99918 * 0.02562 * 14 13 2 36 36 H 1.09001 * 113.61406 * 334.56648 * 19 17 15 37 37 H 1.08996 * 113.61858 * 105.47474 * 19 17 15 38 38 H 1.08997 * 113.54018 * 270.81219 * 20 19 17 39 39 H 1.09002 * 113.74492 * 139.94068 * 20 19 17 40 40 H 1.09003 * 109.46645 * 157.49798 * 22 21 20 41 41 H 1.08994 * 109.47532 * 277.49647 * 22 21 20 42 42 H 1.08997 * 109.46963 * 37.49692 * 22 21 20 43 43 H 1.08997 * 109.47258 * 308.86888 * 23 21 20 44 44 H 1.09002 * 109.46935 * 68.86510 * 23 21 20 45 45 H 1.08997 * 109.47036 * 188.86073 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4797 6 1 0.9165 0.8671 2.3806 7 6 1.8712 -0.4816 3.7320 8 7 2.6272 -1.5508 3.8526 9 14 1.2480 0.3987 5.2572 10 1 2.2254 1.4411 5.6613 11 1 -0.0606 1.0352 4.9613 12 1 1.0838 -0.5806 6.3615 13 6 2.0400 -0.7213 -1.2492 14 7 1.5516 -0.0307 -2.4454 15 6 1.8776 -0.4910 -3.6695 16 8 2.5756 -1.4765 -3.7808 17 6 1.3757 0.2197 -4.8999 18 1 1.9435 1.1215 -5.1291 19 6 -0.1474 0.4315 -4.9108 20 6 -0.1040 0.0848 -6.4102 21 6 1.1788 -0.7084 -6.1102 22 6 2.2593 -0.5548 -7.1825 23 6 0.9220 -2.1675 -5.7281 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7216 1.2490 31 1 1.6766 -1.7489 1.2493 32 1 2.8616 -1.8822 4.7336 33 1 3.1300 -0.7209 -1.2494 34 1 1.6766 -1.7489 -1.2492 35 1 0.9942 0.7582 -2.3564 36 1 -0.6936 -0.2958 -4.3102 37 1 -0.4468 1.4597 -4.7081 38 1 0.0580 0.9503 -7.0526 39 1 -0.9352 -0.5381 -6.7410 40 1 3.2339 -0.7844 -6.7517 41 1 2.0550 -1.2403 -8.0049 42 1 2.2587 0.4696 -7.5548 43 1 0.1765 -2.2094 -4.9340 44 1 0.5564 -2.7121 -6.5987 45 1 1.8501 -2.6205 -5.3796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597656646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:06 Heat of formation + Delta-G solvation = -49.734791 kcal Electronic energy + Delta-G solvation = -21257.240080 eV Core-core repulsion = 18274.212832 eV Total energy + Delta-G solvation = -2983.027248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.73284 -38.32950 -36.79399 -33.59369 -32.11993 -30.71710 -27.69720 -27.46294 -26.95630 -26.50994 -25.39480 -22.84625 -22.69701 -20.38734 -18.80535 -17.96151 -16.81688 -16.32052 -15.53620 -15.46437 -14.74128 -14.53144 -14.22161 -14.05447 -13.56325 -13.32550 -13.12695 -12.87905 -12.72374 -12.28664 -12.12321 -12.06035 -11.93335 -11.72275 -11.36332 -11.12431 -11.01407 -10.91896 -10.85032 -10.63605 -10.50600 -10.40171 -10.27634 -10.20789 -9.86973 -9.45654 -9.08107 -8.90935 -8.63135 -8.36097 -6.00027 -4.01365 2.91167 3.30638 3.37630 3.39216 3.52623 4.25857 4.36142 4.44976 4.56469 4.58252 5.11609 5.15720 5.33547 5.35484 5.42907 5.50453 5.55700 5.61405 5.63991 5.65484 5.71005 5.76017 5.84152 5.91954 6.01118 6.11403 6.17912 6.23866 6.29467 6.31050 6.40582 6.46094 6.61802 6.63074 6.82151 7.06918 7.07524 7.13943 7.64181 7.76591 7.84130 7.98832 8.40481 8.53984 9.03514 9.61779 11.11460 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042628 B = 0.003689 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.694976 B = 7587.302035 C = 7823.150322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.274 1.274 12 H -0.287 1.287 13 C 0.128 3.872 14 N -0.721 5.721 15 C 0.517 3.483 16 O -0.542 6.542 17 C -0.130 4.130 18 H 0.114 0.886 19 C -0.132 4.132 20 C -0.134 4.134 21 C -0.059 4.059 22 C -0.135 4.135 23 C -0.132 4.132 24 H 0.066 0.934 25 H 0.029 0.971 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.397 0.603 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 5.168 -19.474 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.199 1.199 12 H -0.213 1.213 13 C 0.005 3.995 14 N -0.373 5.373 15 C 0.303 3.697 16 O -0.420 6.420 17 C -0.151 4.151 18 H 0.132 0.868 19 C -0.170 4.170 20 C -0.172 4.172 21 C -0.060 4.060 22 C -0.193 4.193 23 C -0.189 4.189 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.232 0.768 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.678 4.330 -19.400 20.420 hybrid contribution -0.502 0.859 1.100 1.483 sum -5.180 5.189 -18.299 19.713 Atomic orbital electron populations 1.21754 0.95316 1.01101 1.00195 1.20896 0.95438 0.95828 0.95131 1.21757 1.00508 0.95940 1.00187 1.19087 0.96324 0.95205 0.89516 1.21186 1.31162 1.12072 0.90535 0.92267 1.25013 0.95330 0.95063 0.99083 1.69960 1.36992 1.23004 1.23438 0.86652 0.79189 0.79417 0.83074 1.20773 1.19940 1.21335 1.21596 0.98800 0.95968 0.83128 1.46251 1.53281 1.31837 1.05890 1.20414 0.80227 0.84658 0.84436 1.90642 1.38103 1.26500 1.86762 1.22920 0.97681 1.00312 0.94230 0.86839 1.22905 0.94247 1.02335 0.97471 1.23065 0.97914 1.00026 0.96160 1.21631 0.95314 0.95211 0.93801 1.21723 0.98665 1.01133 0.97738 1.21714 1.03232 0.93566 1.00361 0.91479 0.95245 0.93427 0.93409 0.95262 0.91472 0.96394 0.96389 0.93036 0.91990 0.91992 0.76779 0.89558 0.90727 0.89965 0.91113 0.92037 0.92557 0.92793 0.93048 0.93083 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 14 N -0.72 -10.47 4.88 -60.29 -0.29 -10.76 16 15 C 0.52 7.60 6.61 -10.99 -0.07 7.53 16 16 O -0.54 -9.94 14.19 5.56 0.08 -9.86 16 17 C -0.13 -1.41 3.67 -90.96 -0.33 -1.74 16 18 H 0.11 1.08 8.10 -51.93 -0.42 0.66 16 19 C -0.13 -1.18 7.04 -25.83 -0.18 -1.36 16 20 C -0.13 -1.11 7.23 -25.83 -0.19 -1.29 16 21 C -0.06 -0.61 1.19 -153.69 -0.18 -0.79 16 22 C -0.14 -1.26 9.19 37.16 0.34 -0.92 16 23 C -0.13 -1.55 7.76 37.16 0.29 -1.27 16 24 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 25 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 29 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.40 4.94 5.98 -40.82 -0.24 4.70 16 36 H 0.09 0.85 7.56 -51.93 -0.39 0.46 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.58 7.96 -51.93 -0.41 0.16 16 39 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.42 7.94 -51.93 -0.41 0.01 16 43 H 0.05 0.63 7.17 -51.93 -0.37 0.26 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 1.19 6.36 -51.93 -0.33 0.86 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -30.10 345.78 -7.66 -37.76 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.07 Total: 1.71 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.30 Total: -14.48 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.44 Total: -36.50 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.10 -7.66 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597656646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.978 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds